Wall clock time and date at job start Sat Apr 11 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 120.00549 * 2 1 4 4 N 1.46906 * 109.46991 * 124.99807 * 3 2 1 5 5 C 1.46852 * 110.99690 * 170.00129 * 4 3 2 6 6 C 1.53058 * 109.49772 * 174.11573 * 5 4 3 7 7 C 1.53026 * 109.27323 * 59.09536 * 6 5 4 8 8 C 1.53029 * 109.30991 * 302.43507 * 7 6 5 9 9 C 1.46846 * 110.99781 * 45.75607 * 4 3 2 10 10 C 1.53192 * 109.46631 * 182.53375 * 7 6 5 11 11 N 1.47171 * 108.40677 * 187.84769 * 10 7 6 12 12 C 1.34770 * 120.98822 * 230.41111 * 11 10 7 13 13 O 1.21289 * 119.99946 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00340 * 179.97438 * 12 11 10 15 15 S 1.81000 * 109.47320 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99943 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00164 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99870 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00038 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99845 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47365 * 59.99535 * 20 18 16 22 22 H 1.48492 * 109.47098 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46916 * 299.99670 * 20 18 16 24 24 C 1.47156 * 118.02525 * 50.38610 * 11 10 7 25 25 C 1.53296 * 108.39467 * 309.41164 * 24 11 10 26 26 O 1.42866 * 109.56966 * 62.54539 * 7 6 5 27 27 H 1.07998 * 120.00848 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.99910 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99910 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46993 * 5.00471 * 3 2 1 31 31 H 1.08990 * 109.47475 * 245.00040 * 3 2 1 32 32 H 1.09002 * 109.46841 * 294.12582 * 5 4 3 33 33 H 1.08998 * 109.46603 * 54.11455 * 5 4 3 34 34 H 1.08999 * 109.50479 * 179.02521 * 6 5 4 35 35 H 1.08999 * 109.50514 * 299.15448 * 6 5 4 36 36 H 1.09001 * 109.50200 * 297.59929 * 8 7 6 37 37 H 1.08997 * 109.53773 * 177.50255 * 8 7 6 38 38 H 1.09001 * 109.46015 * 305.88441 * 9 4 3 39 39 H 1.08998 * 109.46287 * 65.86615 * 9 4 3 40 40 H 1.09002 * 109.67888 * 307.57341 * 10 7 6 41 41 H 1.08994 * 109.68050 * 68.11464 * 10 7 6 42 42 H 1.08994 * 109.47308 * 300.00814 * 14 12 11 43 43 H 1.09006 * 109.46582 * 60.00605 * 14 12 11 44 44 H 0.96996 * 120.00400 * 180.02562 * 19 18 16 45 45 H 1.09004 * 109.68023 * 69.14057 * 24 11 10 46 46 H 1.08995 * 109.67817 * 189.68650 * 24 11 10 47 47 H 1.08995 * 109.51256 * 172.29453 * 25 24 11 48 48 H 1.08998 * 109.51614 * 292.45693 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3318 1.1346 5 6 3.9124 2.4753 1.0358 6 6 4.7681 2.5553 2.3023 7 6 5.5582 1.2544 2.4611 8 6 4.5852 0.0743 2.5112 9 6 3.7345 0.0666 1.2389 10 6 6.3679 1.3043 3.7605 11 7 7.2592 0.1337 3.7979 12 6 7.3073 -0.6675 4.8805 13 8 6.6091 -0.4288 5.8431 14 6 8.2277 -1.8607 4.8947 15 16 8.0642 -2.7302 6.4737 16 6 9.2166 -4.0392 6.2229 17 1 9.7631 -4.1069 5.2939 18 6 9.4212 -4.9840 7.2190 19 7 8.7548 -4.9017 8.3510 20 14 10.6436 -6.3714 6.9534 21 1 11.9945 -5.8023 6.7157 22 1 10.6773 -7.2387 8.1582 23 1 10.2310 -7.1758 5.7752 24 6 8.0959 -0.1362 2.6178 25 6 7.1988 -0.1197 1.3748 26 8 6.4468 1.0961 1.3536 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5400 0.9354 0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0897 31 1 2.6213 1.4025 -0.9313 32 1 4.5593 2.3486 0.1677 33 1 3.3360 3.3942 0.9283 34 1 5.4600 3.3936 2.2217 35 1 4.1227 2.6972 3.1692 36 1 3.9371 0.1738 3.3819 37 1 5.1460 -0.8578 2.5796 38 1 3.0289 -0.7632 1.2788 39 1 4.3821 -0.0487 0.3697 40 1 6.9612 2.2183 3.7885 41 1 5.6922 1.2785 4.6153 42 1 7.9618 -2.5343 4.0801 43 1 9.2575 -1.5265 4.7684 44 1 8.8980 -5.5617 9.0472 45 1 8.8625 0.6333 2.5276 46 1 8.5667 -1.1141 2.7177 47 1 7.8168 -0.1812 0.4791 48 1 6.5168 -0.9693 1.4067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001503692908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:06 Heat of formation + Delta-G solvation = -64.570694 kcal Electronic energy + Delta-G solvation = -28230.644478 eV Core-core repulsion = 24411.802001 eV Total energy + Delta-G solvation = -3818.842478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.96451 -40.23846 -38.67555 -35.98849 -35.37091 -34.59716 -33.42025 -32.02129 -31.21383 -30.22474 -28.09717 -27.58347 -25.71604 -24.89334 -24.22713 -22.76514 -20.82468 -20.43410 -20.15977 -19.57120 -18.29151 -17.60150 -17.42499 -16.89372 -16.83023 -16.63716 -16.23181 -16.13685 -15.91407 -15.78698 -15.40653 -15.03978 -14.83065 -14.73128 -14.49314 -14.13426 -13.79349 -13.59708 -13.38446 -13.25359 -13.18821 -13.01355 -12.87915 -12.83270 -12.62305 -12.42227 -12.28915 -12.06353 -11.98423 -11.76025 -11.52558 -11.43749 -11.13949 -10.88938 -10.86093 -10.44823 -10.29055 -9.60199 -9.18673 -8.69407 -8.35507 -6.14416 1.21514 1.34601 1.43161 1.43406 1.50703 1.53668 1.97110 2.26100 2.65390 2.98636 3.05845 3.20536 3.49058 3.60987 3.66226 3.77809 3.89234 3.94506 4.06532 4.18012 4.20628 4.24525 4.25189 4.35696 4.37110 4.41780 4.47813 4.57054 4.59705 4.64239 4.69374 4.73867 4.78469 4.83279 4.86574 4.93302 5.00121 5.05258 5.12104 5.24018 5.37519 5.40302 5.70551 5.83426 6.09285 6.13091 6.16460 6.17227 6.19202 7.05249 7.05936 8.73516 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.002485 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.801934 B =11266.882782 C =11849.428170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.173 4.173 3 C 0.085 3.915 4 N -0.545 5.545 5 C 0.063 3.937 6 C -0.097 4.097 7 C 0.115 3.885 8 C -0.136 4.136 9 C 0.066 3.934 10 C 0.091 3.909 11 N -0.609 5.609 12 C 0.535 3.465 13 O -0.562 6.562 14 C -0.123 4.123 15 S -0.151 6.151 16 C -0.546 4.546 17 H 0.084 0.916 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.261 1.261 22 H -0.280 1.280 23 H -0.261 1.261 24 C 0.067 3.933 25 C 0.046 3.954 26 O -0.369 6.369 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.037 0.963 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.271 0.729 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.135 0.865 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.711 14.719 -23.140 28.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.192 4.192 3 C -0.042 4.042 4 N -0.270 5.270 5 C -0.064 4.064 6 C -0.135 4.135 7 C 0.075 3.925 8 C -0.174 4.174 9 C -0.062 4.062 10 C -0.032 4.032 11 N -0.344 5.344 12 C 0.323 3.677 13 O -0.440 6.440 14 C -0.274 4.274 15 S 0.076 5.924 16 C -0.694 4.694 17 H 0.102 0.898 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.186 1.186 22 H -0.205 1.205 23 H -0.186 1.186 24 C -0.055 4.055 25 C -0.032 4.032 26 O -0.288 6.288 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.080 0.920 45 H 0.113 0.887 46 H 0.121 0.879 47 H 0.153 0.847 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.019 15.217 -21.281 28.014 hybrid contribution 1.850 -1.649 -1.025 2.681 sum -8.170 13.568 -22.306 27.356 Atomic orbital electron populations 1.24002 0.95627 1.02759 0.98989 1.22998 0.96557 0.98117 1.01486 1.21248 0.94897 0.96470 0.91557 1.62103 1.19178 1.03004 1.42703 1.22021 0.93749 0.93951 0.96714 1.21564 0.97676 0.94702 0.99520 1.21742 0.88620 0.96843 0.85304 1.22050 0.97753 0.98399 0.99184 1.21959 0.95516 0.92677 0.96005 1.22331 0.93641 0.88065 0.99139 1.48089 1.42915 1.27542 1.15864 1.20142 0.82197 0.83231 0.82114 1.90684 1.44514 1.73129 1.35710 1.23352 1.02375 0.97950 1.03729 1.85625 1.57267 1.31405 1.18054 1.23152 1.27436 1.13166 1.05600 0.89816 1.26139 0.98415 1.00683 0.93914 1.70173 1.41628 1.36550 1.06438 0.85004 0.78049 0.76855 0.78097 1.18596 1.20465 1.18566 1.22726 0.94079 1.04414 0.84280 1.23122 0.94113 0.87460 0.98456 1.87947 1.55700 1.40280 1.44860 0.87746 0.87549 0.87575 0.89356 0.93672 0.94189 0.89026 0.88902 0.89573 0.91720 0.92302 0.90444 0.94441 0.89522 0.90196 0.87410 0.87388 0.91974 0.88739 0.87887 0.84711 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 14.32 67.79 0.97 -1.33 16 2 C -0.17 -2.60 8.56 25.66 0.22 -2.38 16 3 C 0.08 1.23 5.72 85.56 0.49 1.72 16 4 N -0.54 -9.58 4.80 -900.84 -4.32 -13.90 16 5 C 0.06 0.96 5.30 86.33 0.46 1.41 16 6 C -0.10 -1.57 5.10 30.62 0.16 -1.42 16 7 C 0.12 2.33 0.68 -10.71 -0.01 2.33 16 8 C -0.14 -3.11 4.40 30.62 0.13 -2.97 16 9 C 0.07 1.28 4.87 86.33 0.42 1.70 16 10 C 0.09 2.25 5.30 86.32 0.46 2.70 16 11 N -0.61 -16.87 2.60 -817.50 -2.13 -19.00 16 12 C 0.54 20.42 7.73 87.66 0.68 21.10 16 13 O -0.56 -26.63 15.33 -3.06 -0.05 -26.68 16 14 C -0.12 -4.91 4.53 71.23 0.32 -4.59 16 15 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 16 C -0.55 -30.98 9.50 67.96 0.65 -30.33 16 17 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 18 C 0.01 0.75 5.49 84.86 0.47 1.22 16 19 N -0.91 -56.05 13.22 21.65 0.29 -55.76 16 20 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 24 C 0.07 1.30 6.54 86.35 0.56 1.87 16 25 C 0.05 0.75 6.61 72.08 0.48 1.22 16 26 O -0.37 -6.98 9.11 -148.98 -1.36 -8.34 16 27 H 0.10 1.21 8.06 -2.91 -0.02 1.18 16 28 H 0.11 1.16 7.84 -2.91 -0.02 1.14 16 29 H 0.11 1.65 6.48 -2.91 -0.02 1.63 16 30 H 0.09 1.11 7.79 -2.39 -0.02 1.09 16 31 H 0.05 0.62 8.08 -2.39 -0.02 0.60 16 32 H 0.04 0.65 7.77 -2.39 -0.02 0.63 16 33 H 0.09 1.10 8.12 -2.39 -0.02 1.08 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.51 6.08 -2.39 -0.01 1.49 16 38 H 0.08 1.52 5.79 -2.39 -0.01 1.51 16 39 H 0.04 0.72 7.77 -2.39 -0.02 0.71 16 40 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 2.37 7.07 -2.39 -0.02 2.35 16 42 H 0.11 3.86 7.66 -2.40 -0.02 3.84 16 43 H 0.11 3.89 8.01 -2.39 -0.02 3.87 16 44 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.10 1.91 6.05 -2.39 -0.01 1.90 16 47 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.05 0.98 6.22 -2.39 -0.01 0.96 16 Total: -1.00 -75.24 384.91 0.69 -74.55 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.94 Total: 21.13 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 6.45 Total: -7.73 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -6.16 Total: -88.65 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.40 Total: -35.01 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -75.24 0.69 -74.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503692908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.976 kcal (2) G-P(sol) polarization free energy of solvation -75.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds