Wall clock time and date at job start Sat Apr 11 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47201 * 2 1 4 4 H 1.08995 * 109.47459 * 305.00234 * 3 2 1 5 5 C 1.53001 * 109.47209 * 65.00187 * 3 2 1 6 6 C 1.52999 * 109.47109 * 184.99852 * 3 2 1 7 7 C 1.50697 * 109.47061 * 175.00376 * 6 3 2 8 8 O 1.21278 * 120.00326 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99776 * 180.02562 * 7 6 3 10 10 C 1.48013 * 127.84493 * 0.06393 * 9 7 6 11 11 C 1.54384 * 104.65355 * 140.40637 * 10 9 7 12 12 H 1.09005 * 118.17960 * 244.23203 * 11 10 9 13 13 C 1.54152 * 104.96337 * 23.85282 * 11 10 9 14 14 H 1.09006 * 121.78804 * 222.19785 * 13 11 10 15 15 C 1.48149 * 127.83705 * 179.97438 * 9 7 6 16 16 C 1.52992 * 118.12562 * 87.21362 * 11 10 9 17 17 H 1.08997 * 117.44185 * 16.06904 * 16 11 10 18 18 N 1.46506 * 117.44285 * 160.81297 * 16 11 10 19 19 C 1.34780 * 119.99719 * 205.16896 * 18 16 11 20 20 O 1.21279 * 120.00426 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99340 * 179.97438 * 19 18 16 22 22 S 1.81000 * 109.46640 * 180.02562 * 21 19 18 23 23 C 1.76204 * 100.00077 * 180.02562 * 22 21 19 24 24 H 1.07998 * 119.99794 * 359.97438 * 23 22 21 25 25 C 1.38797 * 119.99960 * 180.02562 * 23 22 21 26 26 N 1.31633 * 120.00292 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99660 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47297 * 269.99524 * 27 25 23 29 29 H 1.48503 * 109.47261 * 149.99704 * 27 25 23 30 30 H 1.48500 * 109.47454 * 29.99697 * 27 25 23 31 31 H 1.09002 * 109.46936 * 59.99730 * 1 2 3 32 32 H 1.08995 * 109.47278 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46878 * 300.00283 * 1 2 3 34 34 H 1.09003 * 109.46878 * 239.99717 * 2 1 3 35 35 H 1.09002 * 109.46936 * 120.00270 * 2 1 3 36 36 H 1.08993 * 109.47490 * 179.97438 * 5 3 2 37 37 H 1.09000 * 109.47035 * 300.00207 * 5 3 2 38 38 H 1.09003 * 109.47172 * 59.99531 * 5 3 2 39 39 H 1.08994 * 109.47174 * 54.99888 * 6 3 2 40 40 H 1.09003 * 109.47193 * 295.00437 * 6 3 2 41 41 H 1.08995 * 110.36621 * 21.61504 * 10 9 7 42 42 H 1.09004 * 110.41279 * 259.21174 * 10 9 7 43 43 H 1.08998 * 110.40985 * 100.80464 * 15 9 7 44 44 H 1.09000 * 110.50967 * 338.41997 * 15 9 7 45 45 H 0.96995 * 120.00144 * 25.16558 * 18 16 11 46 46 H 1.08997 * 109.46997 * 60.00690 * 21 19 18 47 47 H 1.08995 * 109.47631 * 299.99616 * 21 19 18 48 48 H 0.96998 * 119.99330 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4442 -0.1257 7 6 4.0570 2.8632 -0.2491 8 8 3.2661 3.7826 -0.2381 9 7 5.3761 3.1106 -0.3727 10 6 6.4844 2.1302 -0.4087 11 6 7.4552 2.6772 -1.4772 12 1 7.6157 2.0850 -2.3782 13 6 7.1660 4.1900 -1.5407 14 1 7.1112 4.7249 -2.4889 15 6 6.0457 4.4255 -0.5053 16 6 8.5193 3.6844 -1.0370 17 1 8.7208 3.7676 0.0310 18 7 9.6781 3.8691 -1.9141 19 6 10.8459 4.3083 -1.4044 20 8 10.9377 4.5502 -0.2195 21 6 12.0380 4.4978 -2.3066 22 16 13.4435 5.0912 -1.3326 23 6 14.6605 5.2225 -2.6001 24 1 14.4100 4.9633 -3.6181 25 6 15.9413 5.6581 -2.2899 26 7 16.2468 5.9735 -1.0489 27 14 17.2316 5.7966 -3.6335 28 1 17.9654 4.5107 -3.7497 29 1 18.1862 6.8821 -3.2931 30 1 16.5693 6.1071 -4.9258 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.9990 3.1540 1.3076 37 1 0.5490 2.1252 1.3970 38 1 2.0699 1.5874 2.1492 39 1 3.8571 0.8799 -1.0112 40 1 4.0030 0.9834 0.7597 41 1 6.1127 1.1479 -0.7000 42 1 6.9777 2.0783 0.5620 43 1 6.4701 4.7339 0.4501 44 1 5.3441 5.1763 -0.8688 45 1 9.6049 3.6753 -2.8617 46 1 11.7967 5.2280 -3.0790 47 1 12.2955 3.5470 -2.7732 48 1 15.5768 5.9012 -0.3513 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526122980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:31 Heat of formation + Delta-G solvation = -58.006809 kcal Electronic energy + Delta-G solvation = -26063.158774 eV Core-core repulsion = 22244.600927 eV Total energy + Delta-G solvation = -3818.557846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.00865 -39.63722 -38.60959 -36.65180 -34.91764 -32.65894 -32.57250 -31.20631 -29.42255 -29.07255 -28.02429 -25.88184 -24.88336 -24.12093 -21.81790 -20.84923 -20.64989 -20.41700 -19.47763 -18.39654 -17.63017 -16.93820 -16.68256 -16.21350 -15.82494 -15.33590 -15.11010 -14.84794 -14.67057 -14.20675 -14.00037 -13.90167 -13.65642 -13.47316 -13.22497 -13.13162 -12.84391 -12.75505 -12.44257 -12.37966 -12.28095 -12.15724 -11.97109 -11.91958 -11.76756 -11.26627 -11.13708 -11.05377 -10.96620 -10.94230 -10.54859 -10.22233 -10.00312 -9.70067 -9.62698 -9.13179 -9.06318 -8.92795 -8.28654 -6.73216 -6.66758 -4.05552 2.25243 2.47041 2.66255 2.73658 3.26960 3.30048 3.35754 3.38530 3.53164 4.07364 4.19708 4.20116 4.29096 4.31644 4.41869 4.44429 4.59922 4.71071 4.76552 4.83140 4.86741 5.00521 5.03085 5.08065 5.17153 5.18075 5.23345 5.27541 5.30764 5.35670 5.43690 5.49493 5.57227 5.62010 5.64654 5.65916 5.66742 5.73603 5.74279 5.81208 5.92288 6.00339 6.12730 6.36163 7.15397 7.41554 7.80346 7.87531 8.32857 8.45551 9.22107 10.77206 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.045221 B = 0.001499 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.026012 B =18670.958027 C =18819.668312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.078 0.922 5 C -0.155 4.155 6 C -0.133 4.133 7 C 0.536 3.464 8 O -0.536 6.536 9 N -0.625 5.625 10 C 0.131 3.869 11 C -0.189 4.189 12 H 0.125 0.875 13 C -0.187 4.187 14 H 0.124 0.876 15 C 0.134 3.866 16 C 0.135 3.865 17 H 0.140 0.860 18 N -0.708 5.708 19 C 0.537 3.463 20 O -0.511 6.511 21 C -0.131 4.131 22 S -0.114 6.114 23 C -0.609 4.609 24 H 0.066 0.934 25 C 0.036 3.964 26 N -0.883 5.883 27 Si 1.087 2.913 28 H -0.284 1.284 29 H -0.279 1.279 30 H -0.287 1.287 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.402 0.598 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.543 -12.976 -1.079 31.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.096 4.096 4 H 0.096 0.904 5 C -0.212 4.212 6 C -0.173 4.173 7 C 0.326 3.674 8 O -0.412 6.412 9 N -0.360 5.360 10 C 0.008 3.992 11 C -0.209 4.209 12 H 0.143 0.857 13 C -0.208 4.208 14 H 0.141 0.859 15 C 0.011 3.989 16 C 0.027 3.973 17 H 0.157 0.843 18 N -0.360 5.360 19 C 0.324 3.676 20 O -0.384 6.384 21 C -0.282 4.282 22 S 0.113 5.887 23 C -0.757 4.757 24 H 0.085 0.915 25 C -0.174 4.174 26 N -0.517 5.517 27 Si 0.913 3.087 28 H -0.210 1.210 29 H -0.205 1.205 30 H -0.213 1.213 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.237 0.763 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.352 -11.671 0.671 29.746 hybrid contribution -1.592 -0.930 -2.001 2.721 sum -28.944 -12.602 -1.329 31.596 Atomic orbital electron populations 1.21807 0.95637 1.01516 1.02131 1.21592 0.96284 0.95936 1.01954 1.20938 0.92480 0.96158 0.99984 0.90394 1.21999 1.01303 1.02074 0.95816 1.21770 0.97854 0.93457 1.04220 1.20384 0.79710 0.91869 0.75446 1.90689 1.53410 1.46914 1.50216 1.49308 1.05387 1.08470 1.72839 1.21782 0.86322 0.92649 0.98463 1.24133 1.01765 0.92708 1.02331 0.85731 1.24226 0.96981 0.97190 1.02438 0.85854 1.21691 0.92909 0.86067 0.98207 1.21559 0.80907 0.98366 0.96492 0.84270 1.45344 1.09868 1.69314 1.11462 1.20347 0.82965 0.75365 0.88946 1.90711 1.83273 1.48200 1.16249 1.23317 0.97319 1.05319 1.02274 1.84846 1.02993 1.86186 1.14715 1.23728 0.99498 1.56677 0.95796 0.91524 1.26057 0.97683 0.92723 1.00980 1.70777 1.37770 1.42302 1.00900 0.83288 0.74775 0.77233 0.73408 1.21026 1.20470 1.21291 0.92719 0.92826 0.92358 0.92015 0.91892 0.90814 0.92609 0.93355 0.88920 0.88823 0.89418 0.90053 0.90327 0.89197 0.76348 0.88738 0.88723 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.67 37.16 0.36 -0.43 16 2 C -0.12 -0.62 5.40 -26.73 -0.14 -0.76 16 3 C -0.08 -0.52 2.04 -90.62 -0.18 -0.70 16 4 H 0.08 0.65 7.95 -51.93 -0.41 0.23 16 5 C -0.15 -1.18 8.69 37.16 0.32 -0.86 16 6 C -0.13 -0.83 4.15 -27.89 -0.12 -0.94 16 7 C 0.54 5.11 7.63 -10.99 -0.08 5.03 16 8 O -0.54 -6.99 14.24 5.56 0.08 -6.91 16 9 N -0.63 -5.32 3.31 -169.44 -0.56 -5.89 16 10 C 0.13 0.83 6.71 -2.49 -0.02 0.82 16 11 C -0.19 -1.37 7.05 -89.30 -0.63 -2.00 16 12 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 13 C -0.19 -1.60 7.05 -89.31 -0.63 -2.23 16 14 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.13 1.21 6.85 -2.42 -0.02 1.20 16 16 C 0.13 1.37 5.98 -67.93 -0.41 0.96 16 17 H 0.14 1.65 7.40 -51.93 -0.38 1.27 16 18 N -0.71 -8.34 5.56 -53.80 -0.30 -8.64 16 19 C 0.54 9.23 7.85 -10.98 -0.09 9.14 16 20 O -0.51 -10.81 15.43 5.56 0.09 -10.72 16 21 C -0.13 -2.50 6.16 36.01 0.22 -2.28 16 22 S -0.11 -2.97 19.60 -107.50 -2.11 -5.08 16 23 C -0.61 -17.19 9.50 30.94 0.29 -16.89 16 24 H 0.07 1.80 7.80 -52.49 -0.41 1.39 16 25 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 26 N -0.88 -27.10 13.67 55.49 0.76 -26.34 16 27 Si 1.09 24.55 29.92 -169.99 -5.09 19.46 16 28 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 30 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.31 6.56 -51.93 -0.34 -0.04 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.75 5.95 -51.93 -0.31 0.44 16 37 H 0.05 0.39 6.56 -51.93 -0.34 0.05 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.43 7.95 -51.93 -0.41 0.02 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.38 7.30 -51.93 -0.38 0.00 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.89 7.88 -51.93 -0.41 0.48 16 45 H 0.40 3.55 8.83 -40.82 -0.36 3.19 16 46 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 47 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 48 H 0.28 8.70 7.12 -40.82 -0.29 8.41 16 LS Contribution 402.28 15.07 6.06 6.06 Total: -1.00 -35.57 402.28 -10.20 -45.76 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.92 Total: 1.29 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -1.21 Total: -9.01 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -0.10 Total: -40.86 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.16 Total: -17.63 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.09 Total: 19.46 kcal Atomic # 16 Polarization: -2.97 SS G_CDS: -2.11 Total: -5.08 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.57 -10.20 -45.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526122980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.243 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds