Wall clock time and date at job start Sat Apr 11 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.52999 * 109.46626 * 294.99833 * 3 2 1 6 6 C 1.52997 * 109.47127 * 175.00294 * 3 2 1 7 7 C 1.50701 * 109.47348 * 184.99767 * 6 3 2 8 8 O 1.21280 * 119.99638 * 359.97438 * 7 6 3 9 9 N 1.34771 * 120.00118 * 179.97438 * 7 6 3 10 10 C 1.48150 * 127.83686 * 180.02562 * 9 7 6 11 11 C 1.54386 * 104.61791 * 140.41274 * 10 9 7 12 12 H 1.08996 * 117.61900 * 242.76718 * 11 10 9 13 13 C 1.54287 * 104.96055 * 23.86596 * 11 10 9 14 14 H 1.08994 * 121.81742 * 222.17615 * 13 11 10 15 15 C 1.48142 * 127.84170 * 359.67817 * 9 7 6 16 16 C 1.52998 * 118.12174 * 87.19052 * 11 10 9 17 17 H 1.09000 * 117.44388 * 16.10943 * 16 11 10 18 18 N 1.46507 * 117.44394 * 160.85417 * 16 11 10 19 19 C 1.34770 * 119.99927 * 205.00635 * 18 16 11 20 20 O 1.21281 * 120.00047 * 359.97438 * 19 18 16 21 21 C 1.50701 * 119.99972 * 180.02562 * 19 18 16 22 22 S 1.80995 * 109.47172 * 179.97438 * 21 19 18 23 23 C 1.76205 * 99.99851 * 179.97438 * 22 21 19 24 24 H 1.07995 * 120.00265 * 359.97438 * 23 22 21 25 25 C 1.38802 * 119.99947 * 180.02562 * 23 22 21 26 26 N 1.31634 * 120.00144 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00122 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46941 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.47059 * 119.99737 * 27 25 23 30 30 H 1.48493 * 109.47136 * 239.99561 * 27 25 23 31 31 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 32 32 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 33 33 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 35 35 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 36 36 H 1.09000 * 109.47160 * 60.00369 * 5 3 2 37 37 H 1.09002 * 109.46719 * 180.02562 * 5 3 2 38 38 H 1.08993 * 109.47839 * 299.99931 * 5 3 2 39 39 H 1.09002 * 109.47196 * 304.99671 * 6 3 2 40 40 H 1.09001 * 109.47630 * 64.99767 * 6 3 2 41 41 H 1.08997 * 110.40786 * 259.19815 * 10 9 7 42 42 H 1.09004 * 110.40703 * 21.62743 * 10 9 7 43 43 H 1.09004 * 110.40302 * 338.37584 * 15 9 7 44 44 H 1.09007 * 110.40585 * 100.80241 * 15 9 7 45 45 H 0.97001 * 119.99798 * 24.99493 * 18 16 11 46 46 H 1.09001 * 109.46449 * 299.99106 * 21 19 18 47 47 H 1.08994 * 109.47569 * 59.99070 * 21 19 18 48 48 H 0.96998 * 120.00663 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1256 7 6 4.0570 2.8634 0.2491 8 8 3.2661 3.7827 0.2373 9 7 5.3760 3.1108 0.3727 10 6 6.0455 4.4257 0.5053 11 6 7.1659 4.1898 1.5409 12 1 7.1149 4.7470 2.4763 13 6 7.4560 2.6758 1.4760 14 1 7.6173 2.0826 2.3760 15 6 6.4849 2.1292 0.4138 16 6 8.5192 3.6845 1.0368 17 1 8.7209 3.7690 -0.0310 18 7 9.6780 3.8680 1.9143 19 6 10.9178 3.9295 1.3894 20 8 11.0742 3.8324 0.1906 21 6 12.1097 4.1176 2.2921 22 16 13.6204 4.1590 1.2959 23 6 14.8194 4.3825 2.5676 24 1 14.5064 4.4507 3.5990 25 6 16.1661 4.4721 2.2437 26 7 16.5476 4.3896 0.9866 27 14 17.4372 4.7098 3.5917 28 1 16.7555 4.7707 4.9096 29 1 18.3900 3.5709 3.5800 30 1 18.1765 5.9761 3.3572 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.5489 2.1252 -1.3969 37 1 1.9989 3.1540 -1.3076 38 1 2.0698 1.5875 -2.1492 39 1 3.8571 0.8801 1.0113 40 1 4.0029 0.9836 -0.7597 41 1 6.4699 4.7342 -0.4501 42 1 5.3427 5.1750 0.8697 43 1 6.1131 1.1481 0.7093 44 1 6.9790 2.0731 -0.5562 45 1 9.5528 3.9455 2.8731 46 1 12.0079 5.0560 2.8373 47 1 12.1640 3.2903 2.9996 48 1 17.4887 4.4518 0.7602 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526122983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:35 Heat of formation + Delta-G solvation = -53.009497 kcal Electronic energy + Delta-G solvation = -26037.889903 eV Core-core repulsion = 22219.548757 eV Total energy + Delta-G solvation = -3818.341146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.96032 -39.57161 -38.53104 -36.62146 -34.84596 -32.58010 -32.46657 -31.17431 -29.31006 -29.03614 -27.98877 -25.86760 -25.48290 -24.09506 -21.74956 -20.79950 -20.63449 -20.33573 -19.44735 -17.92823 -17.57211 -16.76579 -16.53075 -16.12932 -15.80060 -15.28757 -15.00251 -14.84447 -14.72310 -14.33491 -14.12129 -13.96045 -13.55537 -13.44662 -13.15097 -13.05802 -12.85568 -12.67760 -12.56790 -12.32115 -12.22318 -12.12913 -11.91331 -11.73930 -11.23822 -11.11141 -11.06844 -11.05791 -11.03078 -10.94055 -10.80867 -10.48713 -9.97658 -9.84683 -9.57055 -9.11734 -9.09350 -8.85508 -8.29778 -6.55595 -6.26185 -3.97318 2.28754 2.51437 2.76101 2.84429 3.18761 3.23187 3.28302 3.34638 3.53322 4.09983 4.15823 4.29018 4.32526 4.35518 4.45173 4.47786 4.64132 4.75790 4.80823 4.86733 4.97710 5.04487 5.06987 5.09419 5.11709 5.23582 5.26140 5.30176 5.38337 5.43478 5.44512 5.57831 5.59731 5.65520 5.68079 5.69339 5.76668 5.79648 5.80512 5.84166 6.02950 6.05639 6.14948 6.44566 7.18623 7.51087 7.55980 7.83390 8.31003 8.43846 9.19482 10.81295 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.040407 B = 0.001506 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.790803 B =18583.709182 C =18690.153452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.077 0.923 5 C -0.155 4.155 6 C -0.133 4.133 7 C 0.536 3.464 8 O -0.537 6.537 9 N -0.625 5.625 10 C 0.134 3.866 11 C -0.186 4.186 12 H 0.124 0.876 13 C -0.190 4.190 14 H 0.124 0.876 15 C 0.130 3.870 16 C 0.135 3.865 17 H 0.139 0.861 18 N -0.710 5.710 19 C 0.538 3.462 20 O -0.511 6.511 21 C -0.154 4.154 22 S -0.058 6.058 23 C -0.536 4.536 24 H 0.074 0.926 25 C 0.074 3.926 26 N -0.867 5.867 27 Si 0.919 3.081 28 H -0.272 1.272 29 H -0.280 1.280 30 H -0.280 1.280 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.402 0.598 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.828 -7.664 0.941 29.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.096 0.904 5 C -0.212 4.212 6 C -0.173 4.173 7 C 0.326 3.674 8 O -0.414 6.414 9 N -0.360 5.360 10 C 0.011 3.989 11 C -0.207 4.207 12 H 0.142 0.858 13 C -0.211 4.211 14 H 0.142 0.858 15 C 0.007 3.993 16 C 0.027 3.973 17 H 0.157 0.843 18 N -0.361 5.361 19 C 0.325 3.675 20 O -0.384 6.384 21 C -0.304 4.304 22 S 0.168 5.832 23 C -0.685 4.685 24 H 0.092 0.908 25 C -0.135 4.135 26 N -0.502 5.502 27 Si 0.745 3.255 28 H -0.196 1.196 29 H -0.205 1.205 30 H -0.205 1.205 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.236 0.764 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -28.943 -7.351 -1.228 29.887 hybrid contribution 0.728 0.218 2.952 3.048 sum -28.215 -7.133 1.723 29.153 Atomic orbital electron populations 1.21806 0.95658 1.01507 1.02109 1.21595 0.96259 0.95955 1.01978 1.20936 0.92505 0.96142 0.99955 0.90416 1.21998 1.01270 1.02076 0.95838 1.21771 0.97814 0.93485 1.04257 1.20377 0.79716 0.91859 0.75429 1.90684 1.53430 1.46923 1.50344 1.49341 1.05413 1.08460 1.72774 1.21708 0.92896 0.86111 0.98168 1.24134 0.96520 0.97593 1.02448 0.85795 1.24144 1.02201 0.92306 1.02436 0.85817 1.21735 0.86272 0.92596 0.98670 1.21551 0.80942 0.98233 0.96557 0.84298 1.45385 1.04960 1.75771 1.10008 1.20375 0.83100 0.74805 0.89212 1.90710 1.85076 1.47165 1.15451 1.23535 0.98946 1.04960 1.02976 1.85418 0.92114 1.95294 1.10338 1.22903 0.93239 1.57935 0.94380 0.90826 1.24992 0.97749 0.94539 0.96247 1.70021 1.16924 1.46647 1.16640 0.86111 0.80447 0.78024 0.80880 1.19611 1.20544 1.20535 0.92739 0.92363 0.92835 0.91879 0.92006 0.92636 0.90816 0.93349 0.88914 0.88801 0.90358 0.89222 0.89474 0.90011 0.76412 0.88995 0.89008 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.67 37.16 0.36 -0.45 16 2 C -0.12 -0.64 5.40 -26.73 -0.14 -0.79 16 3 C -0.08 -0.53 2.04 -90.62 -0.18 -0.72 16 4 H 0.08 0.65 7.95 -51.93 -0.41 0.24 16 5 C -0.15 -1.20 8.69 37.16 0.32 -0.88 16 6 C -0.13 -0.86 4.16 -27.88 -0.12 -0.98 16 7 C 0.54 5.17 7.63 -10.99 -0.08 5.09 16 8 O -0.54 -7.00 14.23 5.56 0.08 -6.92 16 9 N -0.63 -5.40 3.32 -169.57 -0.56 -5.96 16 10 C 0.13 1.18 6.86 -2.41 -0.02 1.16 16 11 C -0.19 -1.53 7.06 -89.22 -0.63 -2.16 16 12 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.19 -1.48 7.04 -89.45 -0.63 -2.11 16 14 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.13 0.89 6.70 -2.64 -0.02 0.88 16 16 C 0.14 1.39 5.98 -67.93 -0.41 0.99 16 17 H 0.14 1.67 7.40 -51.93 -0.38 1.28 16 18 N -0.71 -8.45 5.56 -53.80 -0.30 -8.75 16 19 C 0.54 9.28 7.85 -10.99 -0.09 9.20 16 20 O -0.51 -10.85 15.43 5.56 0.09 -10.77 16 21 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 22 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 23 C -0.54 -14.92 9.50 30.94 0.29 -14.62 16 24 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 25 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 26 N -0.87 -25.69 13.22 55.49 0.73 -24.95 16 27 Si 0.92 21.01 29.55 -169.99 -5.02 15.98 16 28 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 30 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.39 6.56 -51.93 -0.34 0.05 16 37 H 0.07 0.75 5.95 -51.93 -0.31 0.44 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.46 7.94 -51.93 -0.41 0.05 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.85 7.88 -51.93 -0.41 0.44 16 43 H 0.09 0.43 7.30 -51.93 -0.38 0.05 16 44 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 45 H 0.40 3.62 8.83 -40.82 -0.36 3.26 16 46 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 47 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 403.62 15.07 6.08 6.08 Total: -1.00 -34.75 403.62 -10.30 -45.05 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.97 Total: 0.08 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.21 Total: -6.10 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: -0.13 Total: -39.66 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.16 Total: -17.69 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.75 -10.30 -45.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526122983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.962 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds