Wall clock time and date at job start Sat Apr 11 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.52999 * 109.46626 * 294.99833 * 3 2 1 6 6 C 1.52997 * 109.47127 * 175.00294 * 3 2 1 7 7 C 1.50701 * 109.47348 * 184.99767 * 6 3 2 8 8 O 1.21280 * 119.99638 * 359.97438 * 7 6 3 9 9 N 1.34771 * 120.00118 * 179.97438 * 7 6 3 10 10 C 1.48150 * 127.83686 * 180.02562 * 9 7 6 11 11 C 1.54386 * 104.61791 * 140.41274 * 10 9 7 12 12 H 1.08996 * 117.61900 * 242.76718 * 11 10 9 13 13 C 1.54287 * 104.96055 * 23.86596 * 11 10 9 14 14 H 1.08994 * 121.81742 * 222.17615 * 13 11 10 15 15 C 1.48142 * 127.84170 * 359.67817 * 9 7 6 16 16 C 1.52998 * 118.12174 * 87.19052 * 11 10 9 17 17 H 1.09000 * 117.44388 * 16.10943 * 16 11 10 18 18 N 1.46507 * 117.44394 * 160.85417 * 16 11 10 19 19 C 1.34770 * 119.99927 * 205.00635 * 18 16 11 20 20 O 1.21281 * 120.00047 * 359.97438 * 19 18 16 21 21 C 1.50701 * 119.99972 * 180.02562 * 19 18 16 22 22 S 1.80995 * 109.47172 * 179.97438 * 21 19 18 23 23 C 1.76205 * 99.99851 * 179.97438 * 22 21 19 24 24 H 1.07995 * 120.00265 * 359.97438 * 23 22 21 25 25 C 1.38802 * 119.99947 * 180.02562 * 23 22 21 26 26 N 1.31634 * 120.00144 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00122 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46941 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.47059 * 119.99737 * 27 25 23 30 30 H 1.48493 * 109.47136 * 239.99561 * 27 25 23 31 31 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 32 32 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 33 33 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 35 35 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 36 36 H 1.09000 * 109.47160 * 60.00369 * 5 3 2 37 37 H 1.09002 * 109.46719 * 180.02562 * 5 3 2 38 38 H 1.08993 * 109.47839 * 299.99931 * 5 3 2 39 39 H 1.09002 * 109.47196 * 304.99671 * 6 3 2 40 40 H 1.09001 * 109.47630 * 64.99767 * 6 3 2 41 41 H 1.08997 * 110.40786 * 259.19815 * 10 9 7 42 42 H 1.09004 * 110.40703 * 21.62743 * 10 9 7 43 43 H 1.09004 * 110.40302 * 338.37584 * 15 9 7 44 44 H 1.09007 * 110.40585 * 100.80241 * 15 9 7 45 45 H 0.97001 * 119.99798 * 24.99493 * 18 16 11 46 46 H 1.09001 * 109.46449 * 299.99106 * 21 19 18 47 47 H 1.08994 * 109.47569 * 59.99070 * 21 19 18 48 48 H 0.96998 * 120.00663 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1256 7 6 4.0570 2.8634 0.2491 8 8 3.2661 3.7827 0.2373 9 7 5.3760 3.1108 0.3727 10 6 6.0455 4.4257 0.5053 11 6 7.1659 4.1898 1.5409 12 1 7.1149 4.7470 2.4763 13 6 7.4560 2.6758 1.4760 14 1 7.6173 2.0826 2.3760 15 6 6.4849 2.1292 0.4138 16 6 8.5192 3.6845 1.0368 17 1 8.7209 3.7690 -0.0310 18 7 9.6780 3.8680 1.9143 19 6 10.9178 3.9295 1.3894 20 8 11.0742 3.8324 0.1906 21 6 12.1097 4.1176 2.2921 22 16 13.6204 4.1590 1.2959 23 6 14.8194 4.3825 2.5676 24 1 14.5064 4.4507 3.5990 25 6 16.1661 4.4721 2.2437 26 7 16.5476 4.3896 0.9866 27 14 17.4372 4.7098 3.5917 28 1 16.7555 4.7707 4.9096 29 1 18.3900 3.5709 3.5800 30 1 18.1765 5.9761 3.3572 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.5489 2.1252 -1.3969 37 1 1.9989 3.1540 -1.3076 38 1 2.0698 1.5875 -2.1492 39 1 3.8571 0.8801 1.0113 40 1 4.0029 0.9836 -0.7597 41 1 6.4699 4.7342 -0.4501 42 1 5.3427 5.1750 0.8697 43 1 6.1131 1.1481 0.7093 44 1 6.9790 2.0731 -0.5562 45 1 9.5528 3.9455 2.8731 46 1 12.0079 5.0560 2.8373 47 1 12.1640 3.2903 2.9996 48 1 17.4887 4.4518 0.7602 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526122983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:34 Heat of formation + Delta-G solvation = -75.460114 kcal Electronic energy + Delta-G solvation = -26038.863435 eV Core-core repulsion = 22219.548757 eV Total energy + Delta-G solvation = -3819.314678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.72108 -40.60260 -39.53049 -37.19898 -35.82355 -34.57504 -33.59244 -31.70845 -30.62355 -29.72088 -28.63599 -27.67172 -26.51974 -24.62012 -22.61513 -21.86964 -21.38441 -20.96791 -20.10650 -19.80218 -18.32675 -17.88139 -17.68346 -16.87377 -16.82327 -16.56166 -16.35958 -16.03970 -15.81774 -15.33188 -14.88332 -14.81595 -14.59572 -14.51741 -14.12715 -13.91762 -13.79731 -13.69968 -13.43436 -13.22026 -13.15044 -12.91320 -12.78817 -12.71932 -12.66359 -12.59200 -12.20449 -11.96211 -11.75797 -11.71935 -11.56604 -11.39865 -11.20570 -11.14989 -11.05741 -10.66188 -10.26229 -9.84460 -9.81267 -8.65320 -8.34126 -6.11726 1.24985 1.42173 1.45481 1.49682 1.56115 1.61216 1.85874 2.16576 2.28038 2.54207 3.00553 3.30004 3.44995 3.55801 3.64437 3.78630 3.83790 3.90585 3.98085 4.01020 4.16872 4.24533 4.31710 4.41305 4.45357 4.52326 4.58443 4.65633 4.67559 4.71139 4.74415 4.75144 4.83419 4.90817 4.97974 5.04159 5.10149 5.16744 5.18640 5.25609 5.31189 5.43459 5.44585 5.52201 5.58525 6.20970 6.44108 6.51103 7.07841 7.12496 7.19451 8.75243 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.040407 B = 0.001506 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.790803 B =18583.709182 C =18690.153452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.075 4.075 4 H 0.058 0.942 5 C -0.152 4.152 6 C -0.127 4.127 7 C 0.530 3.470 8 O -0.579 6.579 9 N -0.625 5.625 10 C 0.129 3.871 11 C -0.170 4.170 12 H 0.138 0.862 13 C -0.167 4.167 14 H 0.144 0.856 15 C 0.128 3.872 16 C 0.108 3.892 17 H 0.117 0.883 18 N -0.683 5.683 19 C 0.542 3.458 20 O -0.560 6.560 21 C -0.130 4.130 22 S -0.150 6.150 23 C -0.546 4.546 24 H 0.084 0.916 25 C 0.014 3.986 26 N -0.911 5.911 27 Si 0.997 3.003 28 H -0.256 1.256 29 H -0.274 1.274 30 H -0.275 1.275 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.082 0.918 45 H 0.419 0.581 46 H 0.111 0.889 47 H 0.114 0.886 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.746 -9.260 3.341 31.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.094 4.094 4 H 0.077 0.923 5 C -0.209 4.209 6 C -0.167 4.167 7 C 0.321 3.679 8 O -0.459 6.459 9 N -0.358 5.358 10 C 0.006 3.994 11 C -0.191 4.191 12 H 0.156 0.844 13 C -0.188 4.188 14 H 0.161 0.839 15 C 0.005 3.995 16 C 0.001 3.999 17 H 0.135 0.865 18 N -0.335 5.335 19 C 0.328 3.672 20 O -0.437 6.437 21 C -0.281 4.281 22 S 0.077 5.923 23 C -0.694 4.694 24 H 0.102 0.898 25 C -0.190 4.190 26 N -0.548 5.548 27 Si 0.819 3.181 28 H -0.180 1.180 29 H -0.200 1.200 30 H -0.201 1.201 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.136 0.864 44 H 0.100 0.900 45 H 0.257 0.743 46 H 0.129 0.871 47 H 0.132 0.868 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.902 -8.961 1.215 31.240 hybrid contribution 0.843 0.738 2.177 2.449 sum -29.059 -8.224 3.393 30.390 Atomic orbital electron populations 1.21825 0.95872 1.01926 1.01687 1.21558 0.96067 0.94668 1.02930 1.20902 0.93037 0.96938 0.98511 0.92323 1.21952 1.01411 1.00632 0.96940 1.21823 0.97231 0.91481 1.06147 1.21018 0.79537 0.92805 0.74522 1.90673 1.54519 1.48442 1.52261 1.49409 1.05629 1.08667 1.72132 1.21703 0.92955 0.86498 0.98280 1.24056 0.94241 0.98473 1.02282 0.84400 1.24223 0.99584 0.92116 1.02844 0.83854 1.21912 0.85526 0.93394 0.98622 1.21554 0.81051 1.01872 0.95407 0.86487 1.44994 1.03641 1.73753 1.11106 1.20039 0.84211 0.74787 0.88154 1.90701 1.85867 1.49896 1.17250 1.23365 0.95695 1.06874 1.02148 1.85591 0.96979 1.95619 1.14077 1.23246 0.93797 1.57629 0.94681 0.89829 1.26097 1.00193 0.93944 0.98795 1.70182 1.17499 1.47947 1.19156 0.84924 0.77245 0.77981 0.77918 1.17988 1.19983 1.20084 0.93246 0.92789 0.91961 0.90998 0.90879 0.92449 0.93622 0.92398 0.86535 0.86966 0.90751 0.90157 0.86440 0.89953 0.74283 0.87064 0.86827 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.67 71.98 0.70 -0.72 16 2 C -0.11 -0.96 5.40 30.60 0.17 -0.79 16 3 C -0.07 -0.94 2.04 -10.79 -0.02 -0.96 16 4 H 0.06 0.97 7.95 -2.39 -0.02 0.95 16 5 C -0.15 -2.31 8.69 71.98 0.63 -1.69 16 6 C -0.13 -1.33 4.16 29.85 0.12 -1.21 16 7 C 0.53 9.61 7.63 87.66 0.67 10.28 16 8 O -0.58 -15.33 14.23 -3.03 -0.04 -15.37 16 9 N -0.62 -9.75 3.32 -808.80 -2.69 -12.44 16 10 C 0.13 2.17 6.86 86.53 0.59 2.76 16 11 C -0.17 -2.44 7.06 -9.89 -0.07 -2.51 16 12 H 0.14 1.66 8.14 -2.39 -0.02 1.65 16 13 C -0.17 -2.09 7.04 -10.04 -0.07 -2.16 16 14 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 15 C 0.13 1.38 6.70 86.39 0.58 1.96 16 16 C 0.11 2.07 5.98 44.99 0.27 2.34 16 17 H 0.12 2.84 7.40 -2.39 -0.02 2.82 16 18 N -0.68 -14.91 5.56 -442.53 -2.46 -17.37 16 19 C 0.54 18.33 7.85 87.66 0.69 19.02 16 20 O -0.56 -24.34 15.43 -3.03 -0.05 -24.39 16 21 C -0.13 -4.79 6.16 71.24 0.44 -4.35 16 22 S -0.15 -8.05 20.57 -56.49 -1.16 -9.21 16 23 C -0.55 -30.37 9.50 67.95 0.65 -29.73 16 24 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 25 C 0.01 0.81 5.49 84.86 0.47 1.28 16 26 N -0.91 -55.10 13.22 21.65 0.29 -54.82 16 27 Si 1.00 42.74 29.55 68.60 2.03 44.77 16 28 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 29 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 30 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 31 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.05 0.53 6.56 -2.39 -0.02 0.51 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.06 0.81 6.56 -2.39 -0.02 0.80 16 37 H 0.04 0.96 5.95 -2.39 -0.01 0.95 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.12 0.70 7.94 -2.39 -0.02 0.68 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.52 7.88 -2.38 -0.02 1.50 16 43 H 0.12 0.62 7.30 -2.39 -0.02 0.61 16 44 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.42 6.19 8.83 -92.71 -0.82 5.38 16 46 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 47 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 48 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -79.46 403.62 1.85 -77.61 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.14 Total: 17.70 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 5.80 Total: -6.48 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -4.86 Total: -84.63 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.09 Total: -39.76 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -79.46 1.85 -77.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526122983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.147 kcal (2) G-P(sol) polarization free energy of solvation -79.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds