Wall clock time and date at job start Sat Apr 11 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46978 * 2 1 4 4 H 1.08993 * 109.47839 * 54.99933 * 3 2 1 5 5 C 1.53006 * 109.46626 * 174.99863 * 3 2 1 6 6 N 1.46498 * 109.46726 * 174.99859 * 5 3 2 7 7 C 1.34779 * 120.00066 * 179.97438 * 6 5 3 8 8 O 1.21286 * 119.99486 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00253 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.46942 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99912 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99871 * 359.97438 * 11 10 9 13 13 C 1.38800 * 120.00210 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00012 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99899 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46830 * 90.00204 * 15 13 11 17 17 H 1.48499 * 109.47200 * 209.99955 * 15 13 11 18 18 H 1.48504 * 109.47057 * 330.00357 * 15 13 11 19 19 N 1.46504 * 109.47050 * 294.99223 * 3 2 1 20 20 C 1.34777 * 119.99637 * 85.00741 * 19 3 2 21 21 O 1.21284 * 119.99852 * 359.97438 * 20 19 3 22 22 C 1.50698 * 119.99873 * 180.02562 * 20 19 3 23 23 H 1.08999 * 115.55639 * 325.64583 * 22 20 19 24 24 C 1.53121 * 117.51644 * 111.39063 * 22 20 19 25 25 C 1.52458 * 59.85735 * 107.44423 * 24 22 20 26 26 C 1.53255 * 128.58258 * 117.60081 * 25 24 22 27 27 C 1.53891 * 86.88289 * 114.94276 * 26 25 24 28 28 C 1.53258 * 128.58403 * 242.39696 * 25 24 22 29 29 H 1.09007 * 109.46638 * 59.99986 * 1 2 3 30 30 H 1.09001 * 109.47356 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47210 * 300.00626 * 1 2 3 32 32 H 1.08998 * 109.46703 * 239.99388 * 2 1 3 33 33 H 1.09002 * 109.46722 * 119.99537 * 2 1 3 34 34 H 1.08995 * 109.46794 * 294.99833 * 5 3 2 35 35 H 1.09000 * 109.47314 * 54.99967 * 5 3 2 36 36 H 0.96998 * 120.00310 * 359.97438 * 6 5 3 37 37 H 1.08998 * 109.47296 * 300.00322 * 9 7 6 38 38 H 1.09000 * 109.46862 * 60.00188 * 9 7 6 39 39 H 0.97003 * 119.99690 * 179.97438 * 14 13 11 40 40 H 0.96998 * 120.00034 * 265.00623 * 19 3 2 41 41 H 1.08992 * 117.51199 * 214.89451 * 24 22 20 42 42 H 1.09002 * 117.51034 * 359.95669 * 24 22 20 43 43 H 1.08998 * 113.64751 * 229.43692 * 26 25 24 44 44 H 1.08997 * 113.65058 * 0.45122 * 26 25 24 45 45 H 1.08997 * 113.59423 * 270.39327 * 27 26 25 46 46 H 1.09004 * 113.66111 * 139.58105 * 27 26 25 47 47 H 1.08998 * 113.65086 * 359.55830 * 28 25 24 48 48 H 1.09002 * 113.64388 * 130.56107 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8417 5 6 3.5649 1.4442 0.1258 6 7 4.0631 2.8167 0.0060 7 6 5.3857 3.0630 0.0869 8 8 6.1634 2.1482 0.2584 9 6 5.8983 4.4747 -0.0369 10 16 7.7022 4.4768 0.1120 11 6 8.0217 6.2006 -0.0638 12 1 7.2030 6.8891 -0.2126 13 6 9.3255 6.6738 -0.0109 14 7 9.5641 7.9616 -0.1417 15 14 10.7414 5.4830 0.2473 16 1 11.2320 5.0043 -1.0700 17 1 11.8434 6.1725 0.9651 18 1 10.2743 4.3255 1.0520 19 7 1.6526 2.0974 -1.2519 20 6 0.4353 2.6644 -1.3671 21 8 -0.3395 2.6320 -0.4345 22 6 0.0365 3.3376 -2.6551 23 1 0.8405 3.8427 -3.1902 24 6 -1.0608 2.6724 -3.4907 25 6 -1.3548 3.9572 -2.7244 26 6 -1.7646 5.3269 -3.2765 27 6 -3.1056 5.1253 -2.5490 28 6 -2.3578 4.1842 -1.5881 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8498 1.0376 1.0961 35 1 3.9955 0.8310 -0.6658 36 1 3.4411 3.5482 -0.1316 37 1 5.6137 4.8808 -1.0076 38 1 5.4673 5.0883 0.7541 39 1 10.4752 8.2923 -0.1043 40 1 2.2721 2.1230 -1.9978 41 1 -0.9787 2.7407 -4.5754 42 1 -1.4935 1.7477 -3.1090 43 1 -1.1727 6.1525 -2.8814 44 1 -1.8558 5.3511 -4.3624 45 1 -3.8591 4.6215 -3.1545 46 1 -3.4832 6.0283 -2.0692 47 1 -2.9244 3.2924 -1.3204 48 1 -1.9309 4.6917 -0.7230 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531085778.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:44 Heat of formation + Delta-G solvation = -36.924312 kcal Electronic energy + Delta-G solvation = -26967.460781 eV Core-core repulsion = 23149.817140 eV Total energy + Delta-G solvation = -3817.643641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.87767 -39.58571 -38.82911 -36.61142 -34.06615 -33.91029 -32.53863 -32.46056 -30.22457 -28.06275 -25.98888 -25.64408 -24.76990 -23.51046 -23.36234 -21.29602 -20.61202 -20.37980 -18.73202 -17.96585 -17.52105 -16.85599 -16.43603 -15.89944 -15.66100 -15.60110 -15.49960 -15.15326 -14.98294 -14.53804 -13.89202 -13.77818 -13.60794 -13.51206 -13.13605 -13.01034 -12.81550 -12.67775 -12.49020 -12.34583 -11.93604 -11.87292 -11.80878 -11.77757 -11.44952 -11.28319 -11.13540 -11.02886 -10.68100 -10.63347 -10.43979 -10.14206 -9.89899 -9.88335 -9.61557 -9.32877 -9.09436 -9.01382 -8.53249 -6.94697 -6.31027 -4.03106 2.21797 2.67542 2.77812 2.91464 3.26483 3.31576 3.38783 3.48545 3.61575 3.99846 4.25075 4.29169 4.30993 4.37789 4.44892 4.54893 4.65206 4.72993 4.74300 4.79848 5.03834 5.07793 5.08649 5.16857 5.19694 5.26052 5.29012 5.39483 5.48249 5.49347 5.50293 5.55603 5.58623 5.67732 5.71460 5.73083 5.80800 5.84103 5.97361 5.97420 6.09643 6.12517 6.19533 6.42173 7.19467 7.51459 7.92024 7.96604 8.39489 8.41345 9.15046 10.78207 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.002306 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.830306 B =12140.122766 C =13824.943045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.135 3.865 4 H 0.096 0.904 5 C 0.113 3.887 6 N -0.737 5.737 7 C 0.531 3.469 8 O -0.518 6.518 9 C -0.124 4.124 10 S -0.141 6.141 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.724 5.724 20 C 0.546 3.454 21 O -0.527 6.527 22 C -0.183 4.183 23 H 0.124 0.876 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.100 4.100 27 C -0.143 4.143 28 C -0.081 4.081 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.400 0.600 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.403 0.597 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.778 -12.110 -6.240 29.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.030 3.970 4 H 0.114 0.886 5 C -0.011 4.011 6 N -0.392 5.392 7 C 0.317 3.683 8 O -0.393 6.393 9 C -0.275 4.275 10 S 0.085 5.915 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.376 5.376 20 C 0.333 3.667 21 O -0.403 6.403 22 C -0.204 4.204 23 H 0.141 0.859 24 C -0.159 4.159 25 C -0.125 4.125 26 C -0.137 4.137 27 C -0.181 4.181 28 C -0.118 4.118 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.235 0.765 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.238 0.762 41 H 0.124 0.876 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.897 -13.518 -5.256 28.814 hybrid contribution 0.084 1.170 -0.648 1.340 sum -24.813 -12.349 -5.904 28.338 Atomic orbital electron populations 1.21778 0.94566 1.00605 1.03011 1.21884 0.97231 0.95126 1.02804 1.21323 0.93447 0.94378 0.87822 0.88579 1.21606 0.91624 0.84519 1.03394 1.45949 1.07728 1.09035 1.76502 1.20296 0.81511 0.91031 0.75466 1.90709 1.55490 1.46122 1.46937 1.23275 1.03060 0.95437 1.05720 1.84786 0.98021 1.12992 1.95670 1.22310 0.97240 0.89881 1.57494 0.89395 1.24719 0.98286 0.95055 0.93276 1.69938 1.21461 1.12548 1.47708 0.86732 0.82402 0.82497 0.80199 1.19206 1.19920 1.15922 1.46059 1.16923 1.57978 1.16688 1.19585 0.81300 0.77531 0.88314 1.90711 1.51002 1.58535 1.40053 1.22186 0.94598 1.05872 0.97732 0.85851 1.22782 0.98975 0.95997 0.98165 1.22295 0.94367 0.94956 1.00834 1.22523 0.96756 0.94442 0.99998 1.22818 0.96255 1.00143 0.98853 1.22318 0.94810 0.99284 0.95401 0.92560 0.93538 0.92106 0.91491 0.90656 0.89973 0.90894 0.76547 0.88540 0.88466 0.91917 0.76238 0.87630 0.88161 0.89416 0.91224 0.90229 0.91184 0.91369 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.52 37.16 0.32 -0.90 16 2 C -0.13 -0.99 5.61 -26.73 -0.15 -1.14 16 3 C 0.14 1.10 2.42 -67.93 -0.16 0.94 16 4 H 0.10 0.93 7.58 -51.93 -0.39 0.53 16 5 C 0.11 1.11 5.23 -4.04 -0.02 1.09 16 6 N -0.74 -8.68 5.39 -60.29 -0.32 -9.00 16 7 C 0.53 8.99 7.85 -10.99 -0.09 8.90 16 8 O -0.52 -10.75 15.86 5.55 0.09 -10.66 16 9 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 10 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 11 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 12 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 13 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 14 N -0.88 -26.44 13.97 55.49 0.78 -25.67 16 15 Si 0.86 21.64 27.74 -169.99 -4.71 16.93 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 19 N -0.72 -5.41 4.47 -53.80 -0.24 -5.65 16 20 C 0.55 4.88 6.18 -10.99 -0.07 4.81 16 21 O -0.53 -6.11 12.28 5.55 0.07 -6.04 16 22 C -0.18 -1.35 6.19 -91.99 -0.57 -1.92 16 23 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 24 C -0.12 -0.78 10.24 -26.95 -0.28 -1.06 16 25 C -0.12 -0.94 2.88 -154.80 -0.45 -1.38 16 26 C -0.10 -0.66 8.10 -26.13 -0.21 -0.87 16 27 C -0.14 -0.94 8.08 -25.81 -0.21 -1.15 16 28 C -0.08 -0.67 6.47 -26.13 -0.17 -0.84 16 29 H 0.06 0.54 5.64 -51.93 -0.29 0.24 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.40 3.98 8.14 -40.82 -0.33 3.65 16 37 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.40 2.52 8.60 -40.82 -0.35 2.16 16 41 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.85 8.05 -51.93 -0.42 0.43 16 LS Contribution 402.98 15.07 6.07 6.07 Total: -1.00 -34.08 402.98 -10.00 -44.08 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -8.11 Total: 3.02 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.62 Total: -7.56 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.21 Total: -40.32 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.16 Total: -16.70 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.08 -10.00 -44.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531085778.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.157 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds