Wall clock time and date at job start Sat Apr 11 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46978 * 2 1 4 4 H 1.08993 * 109.47839 * 54.99933 * 3 2 1 5 5 C 1.53006 * 109.46626 * 174.99863 * 3 2 1 6 6 N 1.46498 * 109.46726 * 174.99859 * 5 3 2 7 7 C 1.34779 * 120.00066 * 179.97438 * 6 5 3 8 8 O 1.21286 * 119.99486 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00253 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.46942 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99912 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99871 * 359.97438 * 11 10 9 13 13 C 1.38800 * 120.00210 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00012 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99899 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46830 * 90.00204 * 15 13 11 17 17 H 1.48499 * 109.47200 * 209.99955 * 15 13 11 18 18 H 1.48504 * 109.47057 * 330.00357 * 15 13 11 19 19 N 1.46504 * 109.47050 * 294.99223 * 3 2 1 20 20 C 1.34777 * 119.99637 * 85.00741 * 19 3 2 21 21 O 1.21284 * 119.99852 * 359.97438 * 20 19 3 22 22 C 1.50698 * 119.99873 * 180.02562 * 20 19 3 23 23 H 1.08999 * 115.55639 * 325.64583 * 22 20 19 24 24 C 1.53121 * 117.51644 * 111.39063 * 22 20 19 25 25 C 1.52458 * 59.85735 * 107.44423 * 24 22 20 26 26 C 1.53255 * 128.58258 * 117.60081 * 25 24 22 27 27 C 1.53891 * 86.88289 * 114.94276 * 26 25 24 28 28 C 1.53258 * 128.58403 * 242.39696 * 25 24 22 29 29 H 1.09007 * 109.46638 * 59.99986 * 1 2 3 30 30 H 1.09001 * 109.47356 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47210 * 300.00626 * 1 2 3 32 32 H 1.08998 * 109.46703 * 239.99388 * 2 1 3 33 33 H 1.09002 * 109.46722 * 119.99537 * 2 1 3 34 34 H 1.08995 * 109.46794 * 294.99833 * 5 3 2 35 35 H 1.09000 * 109.47314 * 54.99967 * 5 3 2 36 36 H 0.96998 * 120.00310 * 359.97438 * 6 5 3 37 37 H 1.08998 * 109.47296 * 300.00322 * 9 7 6 38 38 H 1.09000 * 109.46862 * 60.00188 * 9 7 6 39 39 H 0.97003 * 119.99690 * 179.97438 * 14 13 11 40 40 H 0.96998 * 120.00034 * 265.00623 * 19 3 2 41 41 H 1.08992 * 117.51199 * 214.89451 * 24 22 20 42 42 H 1.09002 * 117.51034 * 359.95669 * 24 22 20 43 43 H 1.08998 * 113.64751 * 229.43692 * 26 25 24 44 44 H 1.08997 * 113.65058 * 0.45122 * 26 25 24 45 45 H 1.08997 * 113.59423 * 270.39327 * 27 26 25 46 46 H 1.09004 * 113.66111 * 139.58105 * 27 26 25 47 47 H 1.08998 * 113.65086 * 359.55830 * 28 25 24 48 48 H 1.09002 * 113.64388 * 130.56107 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8417 5 6 3.5649 1.4442 0.1258 6 7 4.0631 2.8167 0.0060 7 6 5.3857 3.0630 0.0869 8 8 6.1634 2.1482 0.2584 9 6 5.8983 4.4747 -0.0369 10 16 7.7022 4.4768 0.1120 11 6 8.0217 6.2006 -0.0638 12 1 7.2030 6.8891 -0.2126 13 6 9.3255 6.6738 -0.0109 14 7 9.5641 7.9616 -0.1417 15 14 10.7414 5.4830 0.2473 16 1 11.2320 5.0043 -1.0700 17 1 11.8434 6.1725 0.9651 18 1 10.2743 4.3255 1.0520 19 7 1.6526 2.0974 -1.2519 20 6 0.4353 2.6644 -1.3671 21 8 -0.3395 2.6320 -0.4345 22 6 0.0365 3.3376 -2.6551 23 1 0.8405 3.8427 -3.1902 24 6 -1.0608 2.6724 -3.4907 25 6 -1.3548 3.9572 -2.7244 26 6 -1.7646 5.3269 -3.2765 27 6 -3.1056 5.1253 -2.5490 28 6 -2.3578 4.1842 -1.5881 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8498 1.0376 1.0961 35 1 3.9955 0.8310 -0.6658 36 1 3.4411 3.5482 -0.1316 37 1 5.6137 4.8808 -1.0076 38 1 5.4673 5.0883 0.7541 39 1 10.4752 8.2923 -0.1043 40 1 2.2721 2.1230 -1.9978 41 1 -0.9787 2.7407 -4.5754 42 1 -1.4935 1.7477 -3.1090 43 1 -1.1727 6.1525 -2.8814 44 1 -1.8558 5.3511 -4.3624 45 1 -3.8591 4.6215 -3.1545 46 1 -3.4832 6.0283 -2.0692 47 1 -2.9244 3.2924 -1.3204 48 1 -1.9309 4.6917 -0.7230 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001531085778.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:44 Heat of formation + Delta-G solvation = -59.211005 kcal Electronic energy + Delta-G solvation = -26968.427204 eV Core-core repulsion = 23149.817140 eV Total energy + Delta-G solvation = -3818.610064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56639 -40.69153 -39.63838 -37.46768 -35.00379 -34.67096 -34.65473 -33.19643 -31.52449 -29.10583 -27.84689 -26.57028 -25.45384 -24.28923 -23.91525 -22.08687 -21.56485 -21.26776 -19.92532 -19.28159 -18.25856 -17.92946 -17.60500 -17.14643 -16.90787 -16.54496 -16.40771 -16.07982 -16.04735 -15.69536 -15.20037 -14.95603 -14.77828 -14.61557 -14.28490 -14.10448 -13.67939 -13.53992 -13.34653 -13.22880 -13.09599 -13.00634 -12.92176 -12.70170 -12.47377 -12.42663 -12.30915 -12.16265 -11.86441 -11.80516 -11.25579 -11.17224 -11.05162 -11.00488 -10.75075 -10.55581 -10.54328 -10.20194 -10.03199 -8.99718 -8.51775 -6.22584 0.98420 1.31513 1.46520 1.53446 1.54383 1.56463 2.05830 2.22484 2.26270 2.70807 2.81398 2.86554 3.43049 3.53851 3.69934 3.80407 3.82556 3.90652 3.97883 4.00985 4.09507 4.15840 4.21366 4.37744 4.46052 4.51851 4.53470 4.64960 4.66895 4.79627 4.82086 4.86729 4.90796 4.92203 5.04283 5.06969 5.09303 5.16135 5.17080 5.32688 5.40964 5.43952 5.51989 5.53454 5.70392 6.11288 6.37784 6.56274 6.93354 7.13648 7.30079 8.60669 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.002306 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.830306 B =12140.122766 C =13824.943045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.146 3.854 4 H 0.083 0.917 5 C 0.117 3.883 6 N -0.712 5.712 7 C 0.538 3.462 8 O -0.558 6.558 9 C -0.113 4.113 10 S -0.172 6.172 11 C -0.529 4.529 12 H 0.061 0.939 13 C 0.044 3.956 14 N -0.918 5.918 15 Si 0.915 3.085 16 H -0.261 1.261 17 H -0.260 1.260 18 H -0.236 1.236 19 N -0.715 5.715 20 C 0.544 3.456 21 O -0.558 6.558 22 C -0.187 4.187 23 H 0.139 0.861 24 C -0.108 4.108 25 C -0.137 4.137 26 C -0.095 4.095 27 C -0.137 4.137 28 C -0.088 4.088 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.412 0.588 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.277 0.723 40 H 0.412 0.588 41 H 0.127 0.873 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.360 -13.470 -7.358 30.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.041 3.959 4 H 0.101 0.899 5 C -0.007 4.007 6 N -0.366 5.366 7 C 0.324 3.676 8 O -0.436 6.436 9 C -0.264 4.264 10 S 0.055 5.945 11 C -0.677 4.677 12 H 0.079 0.921 13 C -0.161 4.161 14 N -0.556 5.556 15 Si 0.737 3.263 16 H -0.186 1.186 17 H -0.185 1.185 18 H -0.160 1.160 19 N -0.368 5.368 20 C 0.332 3.668 21 O -0.436 6.436 22 C -0.208 4.208 23 H 0.157 0.843 24 C -0.145 4.145 25 C -0.138 4.138 26 C -0.133 4.133 27 C -0.174 4.174 28 C -0.125 4.125 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.249 0.751 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.248 0.752 41 H 0.145 0.855 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.516 -14.869 -6.392 30.216 hybrid contribution 0.064 1.584 -0.289 1.612 sum -25.453 -13.285 -6.680 29.478 Atomic orbital electron populations 1.21695 0.95310 1.00738 1.01622 1.21862 0.96351 0.94563 1.03842 1.21151 0.92043 0.94919 0.87752 0.89889 1.21720 0.92403 0.82968 1.03636 1.45708 1.06042 1.10590 1.74272 1.19876 0.82768 0.89489 0.75498 1.90703 1.56828 1.46746 1.49346 1.23274 0.98288 0.97574 1.07275 1.84679 1.03971 1.10035 1.95853 1.22464 0.96724 0.91594 1.56891 0.92055 1.25586 1.00826 0.96602 0.93093 1.70020 1.22460 1.14207 1.48877 0.85856 0.79601 0.80420 0.80426 1.18555 1.18475 1.15997 1.45981 1.16742 1.57430 1.16677 1.19887 0.81210 0.77227 0.88521 1.90710 1.51922 1.59730 1.41219 1.22248 0.95092 1.06210 0.97273 0.84314 1.22849 0.97569 0.95038 0.99092 1.22408 0.94411 0.96107 1.00838 1.22498 0.96359 0.93676 1.00726 1.22813 0.96516 0.99795 0.98305 1.22256 0.95631 0.99136 0.95474 0.93612 0.92589 0.93829 0.90366 0.89718 0.90128 0.90180 0.75139 0.86730 0.87266 0.91371 0.75172 0.85526 0.88733 0.89774 0.89880 0.89299 0.90875 0.92611 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.52 71.98 0.61 -1.59 16 2 C -0.13 -1.66 5.61 30.60 0.17 -1.49 16 3 C 0.15 2.13 2.42 44.99 0.11 2.24 16 4 H 0.08 1.50 7.58 -2.39 -0.02 1.48 16 5 C 0.12 2.02 5.23 86.38 0.45 2.47 16 6 N -0.71 -15.14 5.39 -463.05 -2.49 -17.63 16 7 C 0.54 17.23 7.85 87.66 0.69 17.92 16 8 O -0.56 -22.38 15.86 -3.05 -0.05 -22.43 16 9 C -0.11 -4.10 6.16 71.24 0.44 -3.66 16 10 S -0.17 -8.49 18.55 -56.49 -1.05 -9.54 16 11 C -0.53 -30.46 10.04 67.95 0.68 -29.78 16 12 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 13 C 0.04 2.58 5.50 84.86 0.47 3.05 16 14 N -0.92 -55.61 13.97 21.65 0.30 -55.31 16 15 Si 0.92 44.53 27.74 68.60 1.90 46.43 16 16 H -0.26 -12.33 7.11 99.48 0.71 -11.63 16 17 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.24 -11.44 6.74 99.48 0.67 -10.77 16 19 N -0.72 -9.32 4.47 -442.52 -1.98 -11.30 16 20 C 0.54 9.10 6.18 87.66 0.54 9.64 16 21 O -0.56 -12.88 12.28 -3.04 -0.04 -12.92 16 22 C -0.19 -2.44 6.19 -11.68 -0.07 -2.52 16 23 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 24 C -0.11 -1.18 10.24 30.46 0.31 -0.87 16 25 C -0.14 -1.92 2.88 -52.37 -0.15 -2.07 16 26 C -0.10 -1.12 8.10 30.98 0.25 -0.87 16 27 C -0.14 -1.67 8.08 31.19 0.25 -1.42 16 28 C -0.09 -1.47 6.47 30.98 0.20 -1.27 16 29 H 0.04 0.84 5.64 -2.38 -0.01 0.82 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.85 7.85 -2.39 -0.02 0.83 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.41 7.14 8.14 -92.71 -0.75 6.38 16 37 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 38 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 39 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.41 4.05 8.60 -92.71 -0.80 3.25 16 41 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 48 H 0.07 1.40 8.05 -2.39 -0.02 1.38 16 Total: -1.00 -74.18 402.98 0.93 -73.25 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.62 Total: 19.67 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 4.96 Total: -10.21 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -4.17 Total: -84.25 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.09 Total: -35.35 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.90 Total: 46.43 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.05 Total: -9.54 kcal Total: -74.18 0.93 -73.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531085778.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.039 kcal (2) G-P(sol) polarization free energy of solvation -74.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds