Wall clock time and date at job start Sat Apr 11 2020 06:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47204 * 2 1 4 4 N 1.46505 * 109.46858 * 300.00255 * 3 2 1 5 5 C 1.34779 * 119.99384 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00100 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99457 * 179.97438 * 5 4 3 8 8 S 1.81006 * 109.46870 * 180.02562 * 7 5 4 9 9 C 1.76199 * 99.99966 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99794 * 0.02562 * 9 8 7 11 11 C 1.38799 * 120.00169 * 179.97438 * 9 8 7 12 12 N 1.31635 * 119.99660 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00202 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47298 * 90.00126 * 13 11 9 15 15 H 1.48499 * 109.47148 * 210.00494 * 13 11 9 16 16 H 1.48503 * 109.47044 * 330.00303 * 13 11 9 17 17 N 1.46503 * 109.46589 * 239.99861 * 2 1 3 18 18 C 1.34775 * 119.99383 * 174.49942 * 17 2 1 19 19 O 1.21286 * 120.00537 * 5.04714 * 18 17 2 20 20 C 1.50697 * 120.00045 * 185.04494 * 18 17 2 21 21 C 1.53787 * 113.61554 * 279.14047 * 20 18 17 22 22 C 1.53954 * 87.01632 * 220.04425 * 21 20 18 23 23 C 1.53780 * 113.61755 * 181.52920 * 20 18 17 24 24 C 1.52997 * 109.46818 * 120.00199 * 2 1 3 25 25 C 1.53002 * 117.49604 * 122.30946 * 24 2 1 26 26 C 1.53001 * 117.50301 * 53.64888 * 24 2 1 27 27 H 1.09003 * 109.47089 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47070 * 300.00007 * 1 2 3 29 29 H 1.08995 * 109.47451 * 59.99975 * 1 2 3 30 30 H 1.08998 * 109.46773 * 59.99965 * 3 2 1 31 31 H 1.08996 * 109.47004 * 179.97438 * 3 2 1 32 32 H 0.96997 * 120.00369 * 359.97438 * 4 3 2 33 33 H 1.09005 * 109.47227 * 300.00039 * 7 5 4 34 34 H 1.09001 * 109.46985 * 60.00209 * 7 5 4 35 35 H 0.96997 * 119.99419 * 179.97438 * 12 11 9 36 36 H 0.97000 * 120.00478 * 354.22910 * 17 2 1 37 37 H 1.09007 * 112.84619 * 50.33090 * 20 18 17 38 38 H 1.08991 * 113.61425 * 334.56384 * 21 20 18 39 39 H 1.09000 * 113.61091 * 105.47080 * 21 20 18 40 40 H 1.08997 * 113.53961 * 270.80835 * 22 21 20 41 41 H 1.09001 * 113.66349 * 139.93681 * 22 21 20 42 42 H 1.09004 * 113.61305 * 254.53012 * 23 20 18 43 43 H 1.09000 * 113.61391 * 25.35421 * 23 20 18 44 44 H 1.09004 * 115.54891 * 267.97459 * 24 2 1 45 45 H 1.08995 * 117.50008 * 359.97438 * 25 24 2 46 46 H 1.09004 * 117.49470 * 145.01975 * 25 24 2 47 47 H 1.08997 * 117.50192 * 214.97958 * 26 24 2 48 48 H 1.09004 * 117.49716 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8769 3.4236 -1.4091 6 8 2.5742 4.0129 -0.6108 7 6 1.3749 4.1338 -2.6399 8 16 1.9782 5.8404 -2.6398 9 6 1.2634 6.4177 -4.1433 10 1 0.6605 5.7533 -4.7446 11 6 1.4742 7.7265 -4.5543 12 7 2.2085 8.5364 -3.8211 13 14 0.7158 8.3388 -6.1478 14 1 -0.6289 8.9048 -5.8707 15 1 1.5835 9.3898 -6.7373 16 1 0.5897 7.2082 -7.1024 17 7 2.0183 -0.6907 -1.1962 18 6 3.3383 -0.7178 -1.4670 19 8 4.1295 -0.2508 -0.6752 20 6 3.8311 -1.3284 -2.7535 21 6 3.9249 -2.8628 -2.7109 22 6 5.2405 -2.7240 -3.4984 23 6 5.3624 -1.3147 -2.8950 24 6 2.0400 -0.7213 1.2492 25 6 2.9593 -1.9268 1.0430 26 6 1.5170 -2.1350 1.5117 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 0.9943 1.6616 -1.8349 33 1 1.7390 3.6202 -3.5297 34 1 0.2849 4.1334 -2.6405 35 1 2.3561 9.4510 -4.1086 36 1 1.3919 -1.1318 -1.7912 37 1 3.3081 -0.9471 -3.6306 38 1 4.0577 -3.2644 -1.7064 39 1 3.1329 -3.3642 -3.2672 40 1 5.1029 -2.7255 -4.5797 41 1 6.0218 -3.4090 -3.1693 42 1 5.7291 -0.5683 -3.5996 43 1 5.8888 -1.2909 -1.9409 44 1 2.2294 -0.0860 2.1145 45 1 3.2005 -2.2062 0.0175 46 1 3.7533 -2.0848 1.7730 47 1 1.3627 -2.4299 2.5497 48 1 0.8100 -2.5514 0.7942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531652863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:57 Heat of formation + Delta-G solvation = -24.056708 kcal Electronic energy + Delta-G solvation = -28045.235504 eV Core-core repulsion = 24228.149845 eV Total energy + Delta-G solvation = -3817.085659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24787 -39.28249 -38.51015 -36.89917 -35.21820 -33.48559 -32.41165 -31.27777 -29.27253 -27.10981 -26.43883 -25.93574 -25.44013 -23.07642 -22.50707 -21.75578 -20.26627 -19.64732 -19.50571 -17.90892 -17.76840 -16.73253 -16.48762 -15.94279 -15.77169 -15.34912 -15.05759 -14.83007 -14.78784 -14.27952 -14.09122 -13.77555 -13.33884 -13.22600 -12.90568 -12.83511 -12.77352 -12.72168 -12.55472 -12.26040 -11.80294 -11.77845 -11.60682 -11.47247 -11.30282 -11.05373 -11.00840 -10.84841 -10.76054 -10.71230 -10.60174 -10.36930 -9.80248 -9.62792 -9.38963 -9.23675 -9.05307 -8.70693 -8.20191 -6.47312 -6.19847 -3.90077 2.47115 2.86062 3.07983 3.19428 3.22988 3.28725 3.32930 3.56413 3.80013 4.18535 4.21954 4.24210 4.37010 4.38662 4.50259 4.51668 4.55223 4.82057 4.88354 4.96829 5.07999 5.15041 5.20479 5.23774 5.30217 5.36190 5.44322 5.44443 5.46891 5.53367 5.58535 5.68905 5.70707 5.73818 5.76684 5.81908 5.87590 5.91363 5.94835 6.08923 6.13762 6.15076 6.34383 6.70082 7.29697 7.60750 7.77760 8.10198 8.36639 8.70520 9.25167 10.87584 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013744 B = 0.002689 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.765766 B =10411.572454 C =11575.126379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.197 3.803 3 C 0.111 3.889 4 N -0.733 5.733 5 C 0.530 3.470 6 O -0.516 6.516 7 C -0.152 4.152 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 N -0.728 5.728 18 C 0.526 3.474 19 O -0.516 6.516 20 C -0.141 4.141 21 C -0.125 4.125 22 C -0.142 4.142 23 C -0.118 4.118 24 C -0.150 4.150 25 C -0.156 4.156 26 C -0.181 4.181 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.393 0.607 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.268 0.732 36 H 0.399 0.601 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.542 -28.627 4.392 29.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.111 3.889 3 C -0.013 4.013 4 N -0.388 5.388 5 C 0.316 3.684 6 O -0.389 6.389 7 C -0.302 4.302 8 S 0.168 5.832 9 C -0.684 4.684 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 N -0.381 5.381 18 C 0.313 3.687 19 O -0.391 6.391 20 C -0.162 4.162 21 C -0.163 4.163 22 C -0.180 4.180 23 C -0.156 4.156 24 C -0.169 4.169 25 C -0.193 4.193 26 C -0.218 4.218 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.226 0.774 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.233 0.767 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.129 0.871 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.703 -27.079 6.333 27.818 hybrid contribution -1.986 -0.646 -2.545 3.292 sum -2.689 -27.725 3.788 28.112 Atomic orbital electron populations 1.22075 0.92609 1.02778 1.03685 1.20020 0.93921 0.90950 0.84019 1.21698 1.01992 0.89185 0.88457 1.45901 1.55165 1.12302 1.25450 1.20264 0.79877 0.80986 0.87275 1.90708 1.36320 1.65514 1.46406 1.23515 1.04206 1.04966 0.97548 1.85438 1.67649 0.98815 1.31329 1.22867 1.37270 0.99825 1.08418 0.91006 1.24994 0.95076 0.95659 0.97885 1.70024 1.36286 1.06416 1.37523 0.86171 0.78947 0.78521 0.81864 1.20289 1.20753 1.19727 1.46207 1.07931 1.57190 1.26768 1.20381 0.81988 0.78559 0.87776 1.90721 1.54763 1.45053 1.48545 1.22850 0.99472 0.97344 0.96541 1.22876 0.98740 0.93305 1.01331 1.22860 0.97487 0.97678 0.99926 1.22795 0.93366 0.96987 1.02403 1.22430 1.04976 0.90717 0.98794 1.22981 0.92731 1.01204 1.02394 1.23007 0.97839 0.98952 1.01964 0.91571 0.90261 0.91639 0.91111 0.88802 0.77362 0.89507 0.89412 0.92195 0.76715 0.86944 0.89790 0.90796 0.89882 0.91033 0.90823 0.88661 0.87050 0.88755 0.89248 0.89000 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.18 37.16 0.30 -0.72 16 2 C 0.20 1.74 0.55 -131.82 -0.07 1.67 16 3 C 0.11 1.47 4.25 -4.04 -0.02 1.46 16 4 N -0.73 -10.26 5.13 -60.29 -0.31 -10.57 16 5 C 0.53 10.37 7.85 -10.98 -0.09 10.28 16 6 O -0.52 -12.41 15.86 5.56 0.09 -12.32 16 7 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 8 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 9 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16 10 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 11 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 12 N -0.87 -26.45 13.22 55.49 0.73 -25.71 16 13 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 N -0.73 -5.56 4.19 -47.61 -0.20 -5.76 16 18 C 0.53 5.33 4.62 -10.99 -0.05 5.28 16 19 O -0.52 -7.30 11.86 5.55 0.07 -7.23 16 20 C -0.14 -1.12 4.14 -90.96 -0.38 -1.49 16 21 C -0.12 -0.75 7.64 -25.82 -0.20 -0.94 16 22 C -0.14 -0.91 8.09 -25.83 -0.21 -1.12 16 23 C -0.12 -1.05 7.40 -25.92 -0.19 -1.24 16 24 C -0.15 -1.36 4.81 -90.62 -0.44 -1.79 16 25 C -0.16 -1.42 8.29 -26.69 -0.22 -1.64 16 26 C -0.18 -1.29 9.68 -26.69 -0.26 -1.55 16 27 H 0.07 0.33 6.92 -51.93 -0.36 -0.03 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.42 6.86 -51.93 -0.36 0.06 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.58 5.95 -51.93 -0.31 1.27 16 32 H 0.39 4.27 7.15 -40.82 -0.29 3.97 16 33 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 34 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 35 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.40 1.95 8.49 -40.82 -0.35 1.61 16 37 H 0.11 0.78 8.14 -51.92 -0.42 0.35 16 38 H 0.08 0.54 7.33 -51.93 -0.38 0.16 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.00 7.45 -51.93 -0.39 0.61 16 44 H 0.11 1.09 8.06 -51.93 -0.42 0.67 16 45 H 0.09 0.87 4.36 -51.93 -0.23 0.65 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.56 7.21 -51.93 -0.37 0.18 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -36.40 393.82 -9.96 -46.36 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.64 Total: 4.47 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.39 Total: -7.83 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.23 Total: -42.05 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.15 Total: -19.56 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.40 -9.96 -46.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531652863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.307 kcal (2) G-P(sol) polarization free energy of solvation -36.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds