Wall clock time and date at job start Sat Apr 11 2020 06:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47204 * 2 1 4 4 N 1.46505 * 109.46858 * 300.00255 * 3 2 1 5 5 C 1.34779 * 119.99384 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00100 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99457 * 179.97438 * 5 4 3 8 8 S 1.81006 * 109.46870 * 180.02562 * 7 5 4 9 9 C 1.76199 * 99.99966 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99794 * 0.02562 * 9 8 7 11 11 C 1.38799 * 120.00169 * 179.97438 * 9 8 7 12 12 N 1.31635 * 119.99660 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00202 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47298 * 90.00126 * 13 11 9 15 15 H 1.48499 * 109.47148 * 210.00494 * 13 11 9 16 16 H 1.48503 * 109.47044 * 330.00303 * 13 11 9 17 17 N 1.46503 * 109.46589 * 239.99861 * 2 1 3 18 18 C 1.34775 * 119.99383 * 174.49942 * 17 2 1 19 19 O 1.21286 * 120.00537 * 5.04714 * 18 17 2 20 20 C 1.50697 * 120.00045 * 185.04494 * 18 17 2 21 21 C 1.53787 * 113.61554 * 279.14047 * 20 18 17 22 22 C 1.53954 * 87.01632 * 220.04425 * 21 20 18 23 23 C 1.53780 * 113.61755 * 181.52920 * 20 18 17 24 24 C 1.52997 * 109.46818 * 120.00199 * 2 1 3 25 25 C 1.53002 * 117.49604 * 122.30946 * 24 2 1 26 26 C 1.53001 * 117.50301 * 53.64888 * 24 2 1 27 27 H 1.09003 * 109.47089 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47070 * 300.00007 * 1 2 3 29 29 H 1.08995 * 109.47451 * 59.99975 * 1 2 3 30 30 H 1.08998 * 109.46773 * 59.99965 * 3 2 1 31 31 H 1.08996 * 109.47004 * 179.97438 * 3 2 1 32 32 H 0.96997 * 120.00369 * 359.97438 * 4 3 2 33 33 H 1.09005 * 109.47227 * 300.00039 * 7 5 4 34 34 H 1.09001 * 109.46985 * 60.00209 * 7 5 4 35 35 H 0.96997 * 119.99419 * 179.97438 * 12 11 9 36 36 H 0.97000 * 120.00478 * 354.22910 * 17 2 1 37 37 H 1.09007 * 112.84619 * 50.33090 * 20 18 17 38 38 H 1.08991 * 113.61425 * 334.56384 * 21 20 18 39 39 H 1.09000 * 113.61091 * 105.47080 * 21 20 18 40 40 H 1.08997 * 113.53961 * 270.80835 * 22 21 20 41 41 H 1.09001 * 113.66349 * 139.93681 * 22 21 20 42 42 H 1.09004 * 113.61305 * 254.53012 * 23 20 18 43 43 H 1.09000 * 113.61391 * 25.35421 * 23 20 18 44 44 H 1.09004 * 115.54891 * 267.97459 * 24 2 1 45 45 H 1.08995 * 117.50008 * 359.97438 * 25 24 2 46 46 H 1.09004 * 117.49470 * 145.01975 * 25 24 2 47 47 H 1.08997 * 117.50192 * 214.97958 * 26 24 2 48 48 H 1.09004 * 117.49716 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8769 3.4236 -1.4091 6 8 2.5742 4.0129 -0.6108 7 6 1.3749 4.1338 -2.6399 8 16 1.9782 5.8404 -2.6398 9 6 1.2634 6.4177 -4.1433 10 1 0.6605 5.7533 -4.7446 11 6 1.4742 7.7265 -4.5543 12 7 2.2085 8.5364 -3.8211 13 14 0.7158 8.3388 -6.1478 14 1 -0.6289 8.9048 -5.8707 15 1 1.5835 9.3898 -6.7373 16 1 0.5897 7.2082 -7.1024 17 7 2.0183 -0.6907 -1.1962 18 6 3.3383 -0.7178 -1.4670 19 8 4.1295 -0.2508 -0.6752 20 6 3.8311 -1.3284 -2.7535 21 6 3.9249 -2.8628 -2.7109 22 6 5.2405 -2.7240 -3.4984 23 6 5.3624 -1.3147 -2.8950 24 6 2.0400 -0.7213 1.2492 25 6 2.9593 -1.9268 1.0430 26 6 1.5170 -2.1350 1.5117 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 0.9943 1.6616 -1.8349 33 1 1.7390 3.6202 -3.5297 34 1 0.2849 4.1334 -2.6405 35 1 2.3561 9.4510 -4.1086 36 1 1.3919 -1.1318 -1.7912 37 1 3.3081 -0.9471 -3.6306 38 1 4.0577 -3.2644 -1.7064 39 1 3.1329 -3.3642 -3.2672 40 1 5.1029 -2.7255 -4.5797 41 1 6.0218 -3.4090 -3.1693 42 1 5.7291 -0.5683 -3.5996 43 1 5.8888 -1.2909 -1.9409 44 1 2.2294 -0.0860 2.1145 45 1 3.2005 -2.2062 0.0175 46 1 3.7533 -2.0848 1.7730 47 1 1.3627 -2.4299 2.5497 48 1 0.8100 -2.5514 0.7942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001531652863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:56 Heat of formation + Delta-G solvation = -49.483923 kcal Electronic energy + Delta-G solvation = -28046.338111 eV Core-core repulsion = 24228.149845 eV Total energy + Delta-G solvation = -3818.188266 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.05606 -40.54138 -39.44914 -37.67581 -36.26442 -34.60409 -34.53807 -32.29447 -30.68361 -27.88438 -27.65551 -27.24433 -26.52441 -23.99125 -23.15116 -22.47837 -21.69491 -20.43649 -20.22485 -19.81628 -18.48490 -18.06177 -17.52921 -17.12610 -16.88443 -16.65128 -16.39957 -16.17190 -15.82079 -15.69737 -15.06809 -14.81790 -14.75735 -14.40333 -14.12009 -13.77818 -13.66506 -13.45054 -13.37601 -13.27977 -13.16970 -12.89099 -12.83694 -12.64445 -12.49413 -12.34914 -12.12089 -12.03935 -11.74152 -11.43395 -11.31129 -11.27875 -11.14484 -11.08677 -10.96964 -10.47519 -10.27917 -10.13179 -9.97356 -8.68235 -8.34700 -6.13608 1.25733 1.42840 1.46559 1.56941 1.59705 1.69606 2.12961 2.26519 2.29383 2.92493 2.99446 3.31588 3.54743 3.59247 3.67134 3.75699 3.77725 3.89111 3.92617 3.97778 4.16681 4.21635 4.27867 4.28704 4.46283 4.46923 4.57391 4.71081 4.74910 4.77425 4.84506 4.87459 4.88015 4.95577 5.04467 5.06500 5.08842 5.19440 5.20989 5.25611 5.29294 5.38122 5.41284 5.51275 5.61311 6.19532 6.46999 6.65250 7.06158 7.23202 7.38463 8.74694 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013744 B = 0.002689 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.765766 B =10411.572454 C =11575.126379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.209 3.791 3 C 0.113 3.887 4 N -0.702 5.702 5 C 0.530 3.470 6 O -0.569 6.569 7 C -0.125 4.125 8 S -0.156 6.156 9 C -0.545 4.545 10 H 0.085 0.915 11 C 0.011 3.989 12 N -0.913 5.913 13 Si 1.001 2.999 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.256 1.256 17 N -0.712 5.712 18 C 0.521 3.479 19 O -0.563 6.563 20 C -0.140 4.140 21 C -0.110 4.110 22 C -0.133 4.133 23 C -0.134 4.134 24 C -0.167 4.167 25 C -0.171 4.171 26 C -0.149 4.149 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.413 0.587 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.271 0.729 36 H 0.418 0.582 37 H 0.130 0.870 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.100 0.900 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.705 -31.616 2.085 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.122 3.878 3 C -0.012 4.012 4 N -0.356 5.356 5 C 0.316 3.684 6 O -0.448 6.448 7 C -0.276 4.276 8 S 0.071 5.929 9 C -0.692 4.692 10 H 0.103 0.897 11 C -0.193 4.193 12 N -0.549 5.549 13 Si 0.823 3.177 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.180 1.180 17 N -0.366 5.366 18 C 0.309 3.691 19 O -0.441 6.441 20 C -0.161 4.161 21 C -0.148 4.148 22 C -0.170 4.170 23 C -0.172 4.172 24 C -0.186 4.186 25 C -0.208 4.208 26 C -0.185 4.185 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.251 0.749 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.080 0.920 36 H 0.256 0.744 37 H 0.148 0.852 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.093 0.907 47 H 0.119 0.881 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.928 -30.152 3.997 30.669 hybrid contribution -0.933 0.200 -1.730 1.975 sum -4.861 -29.952 2.267 30.429 Atomic orbital electron populations 1.22089 0.89940 1.04732 1.03991 1.19856 0.95550 0.87861 0.84520 1.21707 0.99932 0.92108 0.87428 1.45567 1.53817 1.10379 1.25849 1.20169 0.79433 0.82387 0.86462 1.90698 1.38929 1.67118 1.48037 1.23334 1.05393 0.99964 0.98913 1.85692 1.69341 1.05301 1.32537 1.23201 1.37308 1.00498 1.08237 0.89709 1.26176 0.95349 0.95771 1.02023 1.70201 1.37962 1.06899 1.39873 0.84918 0.77991 0.78173 0.76668 1.19207 1.20440 1.17978 1.46059 1.07545 1.56461 1.26540 1.20856 0.82333 0.77840 0.88050 1.90723 1.56132 1.47102 1.50191 1.22944 0.98395 0.98951 0.95793 1.22821 0.99127 0.91533 1.01302 1.22853 0.97975 0.95507 1.00712 1.22815 0.94355 0.98824 1.01201 1.22402 1.06269 0.91490 0.98470 1.22957 0.93805 1.01916 1.02163 1.23087 0.96287 0.96162 1.03001 0.88790 0.90542 0.90803 0.92073 0.92502 0.74941 0.87419 0.86806 0.92022 0.74423 0.85170 0.90400 0.88014 0.88422 0.90780 0.91949 0.91240 0.88677 0.88819 0.90703 0.88130 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.18 71.98 0.59 -0.87 16 2 C 0.21 3.37 0.55 3.60 0.00 3.38 16 3 C 0.11 3.03 4.25 86.38 0.37 3.40 16 4 N -0.70 -18.92 5.13 -463.05 -2.37 -21.29 16 5 C 0.53 20.80 7.85 87.66 0.69 21.49 16 6 O -0.57 -28.65 15.86 -3.03 -0.05 -28.70 16 7 C -0.12 -5.05 6.16 71.24 0.44 -4.61 16 8 S -0.16 -8.87 20.57 -56.49 -1.16 -10.03 16 9 C -0.54 -31.31 9.50 67.95 0.65 -30.66 16 10 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 11 C 0.01 0.65 5.49 84.86 0.47 1.12 16 12 N -0.91 -56.87 13.22 21.65 0.29 -56.58 16 13 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 14 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 15 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 17 N -0.71 -9.26 4.19 -422.92 -1.77 -11.03 16 18 C 0.52 10.22 4.62 87.66 0.41 10.62 16 19 O -0.56 -16.77 11.86 -3.05 -0.04 -16.81 16 20 C -0.14 -2.01 4.14 -11.01 -0.05 -2.05 16 21 C -0.11 -1.03 7.64 31.18 0.24 -0.79 16 22 C -0.13 -1.49 8.09 31.18 0.25 -1.24 16 23 C -0.13 -2.43 7.40 31.12 0.23 -2.20 16 24 C -0.17 -2.91 4.81 -10.79 -0.05 -2.96 16 25 C -0.17 -3.03 8.29 30.62 0.25 -2.78 16 26 C -0.15 -1.72 9.68 30.62 0.30 -1.43 16 27 H 0.09 0.46 6.92 -2.39 -0.02 0.44 16 28 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.07 0.62 6.86 -2.39 -0.02 0.60 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 2.03 5.95 -2.39 -0.01 2.02 16 32 H 0.41 7.76 7.15 -92.71 -0.66 7.09 16 33 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 34 H 0.11 4.02 8.14 -2.39 -0.02 4.01 16 35 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.42 2.35 8.49 -92.71 -0.79 1.56 16 37 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.08 0.86 7.33 -2.39 -0.02 0.84 16 39 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.07 1.61 7.45 -2.39 -0.02 1.59 16 44 H 0.10 1.95 8.06 -2.39 -0.02 1.93 16 45 H 0.09 1.66 4.36 -2.39 -0.01 1.65 16 46 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.11 0.84 7.21 -2.39 -0.02 0.82 16 Total: -1.00 -85.39 393.82 1.23 -84.16 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -0.47 Total: 24.20 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 4.77 Total: -9.59 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -3.86 Total: -88.90 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -0.08 Total: -45.51 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -85.39 1.23 -84.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531652863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.671 kcal (2) G-P(sol) polarization free energy of solvation -85.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds