Wall clock time and date at job start Sat Apr 11 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47374 * 2 1 4 4 H 1.09010 * 109.46553 * 55.00254 * 3 2 1 5 5 C 1.53001 * 109.47418 * 295.00738 * 3 2 1 6 6 C 1.50696 * 109.47167 * 175.00060 * 3 2 1 7 7 O 1.21280 * 120.00175 * 0.02562 * 6 3 2 8 8 N 1.34781 * 120.00105 * 180.02562 * 6 3 2 9 9 C 1.47807 * 135.00910 * 0.02562 * 8 6 3 10 10 C 1.54650 * 85.79210 * 153.83709 * 9 8 6 11 11 H 1.09008 * 114.44261 * 140.42243 * 10 9 8 12 12 C 1.53012 * 110.83651 * 270.23085 * 10 9 8 13 13 C 1.53100 * 109.44789 * 143.88793 * 12 10 9 14 14 N 1.46618 * 108.05183 * 300.99887 * 13 12 10 15 15 C 1.34780 * 119.89342 * 237.36015 * 14 13 12 16 16 O 1.21275 * 120.00425 * 179.97438 * 15 14 13 17 17 C 1.50697 * 119.99635 * 359.97438 * 15 14 13 18 18 S 1.80999 * 109.46995 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00265 * 180.02562 * 18 17 15 20 20 H 1.08007 * 120.00105 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00324 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00059 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00153 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47144 * 59.99565 * 23 21 19 25 25 H 1.48504 * 109.47272 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46920 * 299.99682 * 23 21 19 27 27 C 1.45770 * 120.15238 * 57.29484 * 14 13 12 28 28 C 1.46813 * 135.01544 * 180.02562 * 8 6 3 29 29 H 1.09002 * 111.56534 * 94.44502 * 28 8 6 30 30 H 1.09003 * 109.46397 * 299.99277 * 1 2 3 31 31 H 1.08993 * 109.47303 * 59.99382 * 1 2 3 32 32 H 1.08997 * 109.47027 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46612 * 240.00311 * 2 1 3 34 34 H 1.08999 * 109.47503 * 120.01002 * 2 1 3 35 35 H 1.08991 * 109.47082 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.46489 * 299.99733 * 5 3 2 37 37 H 1.08995 * 109.47220 * 59.99228 * 5 3 2 38 38 H 1.08997 * 113.82766 * 39.61580 * 9 8 6 39 39 H 1.09001 * 113.92845 * 268.06552 * 9 8 6 40 40 H 1.08991 * 109.47644 * 23.89218 * 12 10 9 41 41 H 1.08998 * 109.47465 * 263.87675 * 12 10 9 42 42 H 1.09002 * 109.75681 * 60.65326 * 13 12 10 43 43 H 1.08997 * 109.75045 * 181.34985 * 13 12 10 44 44 H 1.09002 * 109.47523 * 300.00326 * 17 15 14 45 45 H 1.08998 * 109.47558 * 60.00486 * 17 15 14 46 46 H 0.97001 * 120.00590 * 180.02562 * 22 21 19 47 47 H 1.08998 * 108.70460 * 199.79183 * 27 14 13 48 48 H 1.08998 * 108.59572 * 81.72343 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5420 1.4442 0.1238 7 8 4.1451 0.3950 0.2037 8 7 4.2150 2.6117 0.1458 9 6 3.8357 4.0385 0.0740 10 6 5.1423 4.3077 0.8562 11 1 5.6890 5.1926 0.5302 12 6 4.8911 4.2695 2.3651 13 6 6.1024 3.6509 3.0680 14 7 6.2971 2.2998 2.5331 15 6 6.2931 1.2404 3.3664 16 8 6.4535 0.1219 2.9260 17 6 6.0892 1.4459 4.8453 18 16 6.1357 -0.1548 5.6888 19 6 5.8781 0.3680 7.3517 20 1 5.7510 1.4171 7.5744 21 6 5.8395 -0.5684 8.3755 22 7 5.9948 -1.8470 8.1042 23 14 5.5671 -0.0140 10.1384 24 1 4.2606 0.6843 10.2415 25 1 5.5672 -1.1977 11.0352 26 1 6.6564 0.9119 10.5401 27 6 6.4935 2.0999 1.1026 28 6 5.6287 2.9935 0.2510 29 1 6.0770 3.1449 -0.7310 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5140 0.8899 35 1 1.9982 3.1543 -1.3070 36 1 2.0698 1.5876 -2.1491 37 1 0.5490 2.1253 -1.3968 38 1 2.9310 4.2821 0.6310 39 1 3.8360 4.4457 -0.9371 40 1 4.0055 3.6685 2.5709 41 1 4.7359 5.2835 2.7334 42 1 6.9889 4.2550 2.8746 43 1 5.9188 3.5994 4.1412 44 1 6.8810 2.0852 5.2359 45 1 5.1224 1.9192 5.0166 46 1 5.9675 -2.5014 8.8196 47 1 6.2684 1.0612 0.8607 48 1 7.5392 2.2948 0.8648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573043145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:24 Heat of formation + Delta-G solvation = -40.357875 kcal Electronic energy + Delta-G solvation = -28521.349355 eV Core-core repulsion = 24703.556824 eV Total energy + Delta-G solvation = -3817.792531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.44016 -39.26811 -38.31836 -35.48311 -35.35962 -32.39562 -32.05533 -31.11491 -29.82756 -28.49336 -27.48524 -25.49151 -25.43482 -24.06666 -23.18933 -21.78866 -20.27129 -19.56472 -18.05826 -17.71185 -17.01296 -16.65016 -16.42446 -16.05349 -15.48219 -15.34182 -14.77653 -14.63396 -14.37492 -14.02544 -13.95824 -13.81092 -13.62272 -13.51441 -13.00650 -12.82991 -12.68148 -12.55914 -12.38676 -12.26198 -12.05680 -11.85486 -11.70662 -11.60542 -11.38971 -11.14188 -11.01713 -11.00138 -10.95722 -10.79673 -10.75410 -10.73017 -9.77834 -9.48698 -9.25895 -9.02653 -8.84180 -8.38786 -8.16346 -6.45111 -6.17420 -3.87850 2.57841 2.69118 2.99056 3.18280 3.25222 3.28155 3.31263 3.64455 3.90274 4.14347 4.23646 4.38130 4.53988 4.65518 4.73427 4.76217 4.92974 4.99329 5.00657 5.05417 5.12068 5.16307 5.17096 5.19405 5.25273 5.27644 5.31282 5.42890 5.52131 5.56053 5.59170 5.61812 5.66133 5.71255 5.71560 5.83810 5.91903 5.97628 6.06249 6.09407 6.14450 6.15988 6.27848 6.78302 7.59887 7.61917 7.65238 8.19278 8.38255 8.69805 9.27107 10.89898 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.003186 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.983697 B = 8787.064992 C = 9890.206717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.104 4.104 4 H 0.093 0.907 5 C -0.143 4.143 6 C 0.537 3.463 7 O -0.518 6.518 8 N -0.640 5.640 9 C 0.101 3.899 10 C -0.115 4.115 11 H 0.100 0.900 12 C -0.118 4.118 13 C 0.107 3.893 14 N -0.613 5.613 15 C 0.531 3.469 16 O -0.505 6.505 17 C -0.148 4.148 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.071 0.929 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.105 3.895 28 C 0.133 3.867 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.269 0.731 47 H 0.112 0.888 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 18.412 -19.541 27.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.125 4.125 4 H 0.111 0.889 5 C -0.200 4.200 6 C 0.327 3.673 7 O -0.393 6.393 8 N -0.378 5.378 9 C -0.022 4.022 10 C -0.135 4.135 11 H 0.118 0.882 12 C -0.156 4.156 13 C -0.016 4.016 14 N -0.349 5.349 15 C 0.318 3.682 16 O -0.378 6.378 17 C -0.299 4.299 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.089 0.911 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.019 4.019 28 C 0.029 3.971 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.130 0.870 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.047 15.731 -20.093 26.474 hybrid contribution -0.427 1.855 1.544 2.450 sum -7.473 17.586 -18.549 26.630 Atomic orbital electron populations 1.21828 0.95471 1.02004 1.01596 1.21365 0.95322 0.94032 1.03857 1.21278 0.91604 0.99476 1.00177 0.88918 1.21825 1.02151 1.00090 0.95971 1.20390 0.89572 0.81783 0.75594 1.90789 1.70015 1.30183 1.48275 1.49933 1.08483 1.05293 1.74099 1.23512 0.98566 0.80021 1.00094 1.22960 0.96756 0.97431 0.96303 0.88187 1.21760 0.99372 1.01675 0.92826 1.21593 0.97462 0.83178 0.99378 1.47580 1.74362 1.06703 1.06275 1.20327 0.75800 0.83972 0.88072 1.90724 1.46684 1.23077 1.77325 1.23536 1.04213 1.07932 0.94181 1.85484 1.94589 1.01137 1.02035 1.22822 1.57433 0.95852 0.92313 0.91072 1.24983 0.94681 0.94501 0.99375 1.70012 1.46374 1.00527 1.33317 0.86241 0.78848 0.78157 0.82335 1.19975 1.20815 1.19947 1.20750 0.97732 1.02984 0.80445 1.22148 0.83754 0.92352 0.98816 0.88897 0.92679 0.92703 0.92344 0.91405 0.90667 0.92348 0.92269 0.91292 0.89877 0.89657 0.91027 0.90048 0.91189 0.88841 0.89378 0.89573 0.92148 0.87036 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.67 37.16 0.36 -0.99 16 2 C -0.11 -1.25 4.75 -26.73 -0.13 -1.38 16 3 C -0.10 -1.09 2.57 -91.78 -0.24 -1.33 16 4 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 5 C -0.14 -1.06 8.83 37.16 0.33 -0.73 16 6 C 0.54 7.50 7.32 -10.99 -0.08 7.42 16 7 O -0.52 -9.93 15.04 5.56 0.08 -9.84 16 8 N -0.64 -6.90 3.30 -174.06 -0.57 -7.48 16 9 C 0.10 0.63 6.23 -3.01 -0.02 0.61 16 10 C -0.12 -0.77 4.39 -89.99 -0.40 -1.17 16 11 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 12 C -0.12 -0.96 5.66 -26.67 -0.15 -1.11 16 13 C 0.11 1.15 6.30 -3.93 -0.02 1.13 16 14 N -0.61 -9.34 2.98 -175.48 -0.52 -9.86 16 15 C 0.53 10.98 7.69 -10.99 -0.08 10.90 16 16 O -0.51 -12.80 15.26 5.56 0.08 -12.72 16 17 C -0.15 -3.16 4.47 36.00 0.16 -3.00 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 19 C -0.54 -15.57 9.50 30.94 0.29 -15.27 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 22 N -0.87 -26.70 13.22 55.49 0.73 -25.96 16 23 Si 0.92 21.66 29.55 -169.99 -5.02 16.63 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 C 0.10 1.46 6.02 -5.57 -0.03 1.43 16 28 C 0.13 1.32 4.22 -69.63 -0.29 1.02 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.40 6.56 -51.93 -0.34 0.06 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.07 1.09 7.96 -51.93 -0.41 0.67 16 35 H 0.06 0.35 6.23 -51.93 -0.32 0.03 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.42 6.56 -51.93 -0.34 0.08 16 38 H 0.08 0.45 7.97 -51.93 -0.41 0.03 16 39 H 0.09 0.35 8.05 -51.93 -0.42 -0.07 16 40 H 0.07 0.74 7.69 -51.93 -0.40 0.34 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 1.05 5.79 -51.93 -0.30 0.75 16 44 H 0.09 1.71 7.84 -51.91 -0.41 1.31 16 45 H 0.09 1.71 7.73 -51.92 -0.40 1.31 16 46 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.11 2.08 5.51 -51.93 -0.29 1.79 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -38.66 389.80 -9.77 -48.44 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.82 Total: -0.76 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -0.40 Total: -0.43 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.36 Total: -43.30 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.17 Total: -22.56 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.66 -9.77 -48.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573043145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.080 kcal (2) G-P(sol) polarization free energy of solvation -38.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds