Wall clock time and date at job start Sat Apr 11 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99776 * 2 1 4 4 N 1.46905 * 109.46756 * 124.16271 * 3 2 1 5 5 C 1.46899 * 111.00149 * 301.32322 * 4 3 2 6 6 C 1.50693 * 109.47363 * 289.29338 * 5 4 3 7 7 H 1.08006 * 119.99802 * 355.26544 * 6 5 4 8 8 C 1.37882 * 120.00043 * 175.26101 * 6 5 4 9 9 N 1.31504 * 119.99722 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99768 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47304 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46973 * 120.00590 * 10 8 6 13 13 H 1.48505 * 109.46827 * 240.00203 * 10 8 6 14 14 C 1.46899 * 110.99607 * 65.28381 * 4 3 2 15 15 C 1.50698 * 109.47793 * 66.04257 * 14 4 3 16 16 C 1.40179 * 120.28429 * 270.02567 * 15 14 4 17 17 N 1.31326 * 120.22186 * 179.97438 * 16 15 14 18 18 C 1.33667 * 120.83761 * 359.97438 * 17 16 15 19 19 C 1.40017 * 132.55763 * 180.02562 * 18 17 16 20 20 C 1.48202 * 126.38402 * 359.97438 * 19 18 17 21 21 N 1.33757 * 126.32633 * 0.02562 * 20 19 18 22 22 N 1.28561 * 109.84709 * 179.97438 * 21 20 19 23 23 N 1.28920 * 109.75004 * 359.97438 * 22 21 20 24 24 H 0.96996 * 126.42467 * 179.97438 * 23 22 21 25 25 N 1.32092 * 126.32164 * 179.70850 * 20 19 18 26 26 C 1.39845 * 107.23243 * 179.97438 * 19 18 17 27 27 N 1.31130 * 108.86225 * 0.04478 * 26 19 18 28 28 N 1.37053 * 120.66030 * 0.02562 * 18 17 16 29 29 C 1.35569 * 120.28491 * 89.99647 * 15 14 4 30 30 H 1.08000 * 119.99530 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.00401 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.00308 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.47061 * 4.16919 * 3 2 1 34 34 H 1.08998 * 109.47395 * 244.16727 * 3 2 1 35 35 H 1.09005 * 109.47038 * 49.29630 * 5 4 3 36 36 H 1.08999 * 109.46961 * 169.29296 * 5 4 3 37 37 H 0.97005 * 119.99642 * 179.97438 * 9 8 6 38 38 H 1.09003 * 109.46844 * 306.03557 * 14 4 3 39 39 H 1.09009 * 109.46861 * 186.04595 * 14 4 3 40 40 H 1.08001 * 119.88979 * 359.95006 * 16 15 14 41 41 H 1.08007 * 125.56582 * 179.97438 * 26 19 18 42 42 H 1.08001 * 120.44190 * 359.74941 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9818 1.3403 1.1461 5 6 2.2509 1.1887 2.4113 6 6 1.4517 2.4371 2.6824 7 1 1.5424 3.2897 2.0256 8 6 0.6046 2.4910 3.7690 9 7 0.4946 1.4530 4.5690 10 14 -0.3866 4.0383 4.1047 11 1 -0.0854 5.0545 3.0646 12 1 -1.8355 3.7142 4.0747 13 1 -0.0272 4.5760 5.4415 14 6 4.0263 0.3156 1.0152 15 6 4.9085 0.6447 -0.1614 16 6 4.5978 0.1536 -1.4371 17 7 5.3671 0.4416 -2.4617 18 6 6.4544 1.2041 -2.3092 19 6 7.4272 1.6567 -3.2087 20 6 7.4821 1.3707 -4.6618 21 7 6.6104 0.6322 -5.3575 22 7 6.9607 0.5930 -6.5938 23 7 8.0390 1.2789 -6.7632 24 1 8.5124 1.4107 -7.5994 25 7 8.3976 1.8029 -5.5103 26 6 8.3375 2.4290 -2.4803 27 7 7.9618 2.4549 -1.2242 28 7 6.7912 1.7028 -1.0779 29 6 6.0091 1.4186 0.0046 30 1 -0.5399 -0.9354 -0.0004 31 1 -0.5400 0.9352 0.0004 32 1 1.8500 -0.9352 -0.0004 33 1 1.3575 2.1322 0.0747 34 1 2.6329 1.3960 -0.9249 35 1 1.5777 0.3342 2.3418 36 1 2.9599 1.0276 3.2233 37 1 -0.1011 1.4911 5.3336 38 1 3.5622 -0.6585 0.8603 39 1 4.6272 0.2912 1.9244 40 1 3.7229 -0.4639 -1.5777 41 1 9.2085 2.9226 -2.8859 42 1 6.2614 1.8093 0.9794 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588632187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:59 Heat of formation + Delta-G solvation = 254.785058 kcal Electronic energy + Delta-G solvation = -28183.730834 eV Core-core repulsion = 24204.337869 eV Total energy + Delta-G solvation = -3979.392965 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.11783 -43.45959 -40.00229 -38.41875 -35.70597 -34.81612 -34.48355 -34.01656 -33.57890 -32.42813 -30.49537 -29.05228 -27.59891 -26.28573 -25.56626 -25.49488 -24.46653 -23.24253 -22.42675 -21.90122 -20.32954 -19.98319 -19.31803 -18.33370 -18.04033 -17.60190 -17.21506 -17.08365 -16.74448 -16.23314 -16.00567 -15.88004 -15.30351 -15.14195 -15.06077 -14.58693 -14.38297 -14.05210 -13.68268 -13.62882 -13.22699 -13.09912 -12.96350 -12.85144 -12.72180 -12.55175 -12.38700 -12.21061 -12.10192 -11.94748 -11.85916 -11.75885 -11.63556 -11.25450 -10.85380 -10.62977 -10.50451 -10.08374 -9.00406 -8.89831 -8.12570 -6.18988 -0.70794 -0.31503 0.02187 0.78085 0.91047 1.36521 1.41209 1.44597 1.53875 1.55143 1.78722 2.33715 2.45284 2.69666 2.72508 3.03422 3.21455 3.28491 3.44741 3.50107 3.76641 3.85899 4.09329 4.15662 4.27842 4.33234 4.38426 4.50730 4.57834 4.64120 4.75033 4.81557 4.98684 5.05350 5.07949 5.18220 5.32463 5.33864 5.45335 5.72282 5.80135 5.81893 5.99349 6.16799 6.20030 6.38837 6.49424 6.67082 6.97141 7.19792 7.49454 8.96982 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.002460 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.868153 B =11381.459451 C =11979.772372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.188 4.188 3 C 0.091 3.909 4 N -0.534 5.534 5 C 0.207 3.793 6 C -0.510 4.510 7 H 0.054 0.946 8 C 0.010 3.990 9 N -0.928 5.928 10 Si 0.950 3.050 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.103 3.897 15 C -0.157 4.157 16 C 0.209 3.791 17 N -0.472 5.472 18 C 0.298 3.702 19 C -0.212 4.212 20 C 0.296 3.704 21 N -0.317 5.317 22 N -0.002 5.002 23 N -0.276 5.276 24 H 0.487 0.513 25 N -0.305 5.305 26 C 0.149 3.851 27 N -0.325 5.325 28 N -0.309 5.309 29 C 0.181 3.819 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.057 0.943 34 H 0.079 0.921 35 H -0.008 1.008 36 H 0.008 0.992 37 H 0.261 0.739 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.204 0.796 41 H 0.237 0.763 42 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.581 -3.073 -17.420 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.208 4.208 3 C -0.037 4.037 4 N -0.257 5.257 5 C 0.082 3.918 6 C -0.549 4.549 7 H 0.072 0.928 8 C -0.189 4.189 9 N -0.569 5.569 10 Si 0.777 3.223 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.208 1.208 14 C -0.026 4.026 15 C -0.163 4.163 16 C 0.028 3.972 17 N -0.183 5.183 18 C 0.063 3.937 19 C -0.230 4.230 20 C 0.015 3.985 21 N -0.194 5.194 22 N 0.002 4.998 23 N -0.127 5.127 24 H 0.345 0.655 25 N -0.151 5.151 26 C -0.033 4.033 27 N -0.146 5.146 28 N -0.076 5.076 29 C 0.045 3.955 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.010 0.990 36 H 0.026 0.974 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.220 0.780 41 H 0.253 0.747 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 14.950 -2.576 -17.571 23.214 hybrid contribution -0.832 0.255 0.450 0.980 sum 14.118 -2.321 -17.121 22.312 Atomic orbital electron populations 1.23855 0.96505 1.01541 0.99964 1.23571 0.96801 0.99745 1.00657 1.21209 0.94431 0.94674 0.93378 1.62355 1.13623 1.46601 1.03138 1.19411 0.91594 0.95316 0.85520 1.21415 1.23132 1.00415 1.09915 0.92816 1.25643 0.98133 0.98836 0.96241 1.70044 1.39303 1.31176 1.16402 0.85615 0.78437 0.80286 0.77963 1.19349 1.20858 1.20818 1.20893 0.92458 0.94652 0.94563 1.20487 0.96420 1.01313 0.98091 1.24013 0.95704 0.91313 0.86215 1.68447 1.03161 1.14087 1.32571 1.20573 0.93739 0.93984 0.85356 1.16392 1.02283 1.16913 0.87397 1.22300 0.89083 0.93143 0.93967 1.75675 1.25800 1.21412 0.96516 1.78301 0.99791 1.09128 1.12626 1.50963 1.17803 1.32727 1.11220 0.65455 1.78798 1.22974 1.23262 0.90026 1.24395 0.97915 0.92645 0.88326 1.77825 0.97979 1.19064 1.19767 1.47146 1.19156 1.33447 1.07833 1.22385 0.88192 0.92981 0.91901 0.87703 0.89969 0.85875 0.92426 0.90273 0.99048 0.97411 0.93004 0.91264 0.88717 0.77983 0.74654 0.78037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.60 14.32 67.78 0.97 -4.63 16 2 C -0.19 -5.58 7.40 25.65 0.19 -5.39 16 3 C 0.09 2.95 5.35 85.56 0.46 3.41 16 4 N -0.53 -18.71 4.66 -909.93 -4.24 -22.95 16 5 C 0.21 9.47 4.57 85.55 0.39 9.87 16 6 C -0.51 -26.56 8.52 25.60 0.22 -26.34 16 7 H 0.05 2.83 7.58 -2.91 -0.02 2.81 16 8 C 0.01 0.52 5.46 84.66 0.46 0.98 16 9 N -0.93 -52.47 13.29 21.45 0.28 -52.18 16 10 Si 0.95 42.81 29.54 68.60 2.03 44.83 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 C 0.10 2.64 4.97 85.56 0.43 3.06 16 15 C -0.16 -3.57 4.85 -20.01 -0.10 -3.67 16 16 C 0.21 4.71 9.17 85.24 0.78 5.50 16 17 N -0.47 -13.00 10.47 -191.91 -2.01 -15.01 16 18 C 0.30 8.41 7.88 133.55 1.05 9.46 16 19 C -0.21 -5.58 6.17 -19.81 -0.12 -5.70 16 20 C 0.30 7.73 8.15 137.30 1.12 8.85 16 21 N -0.32 -8.96 12.34 -52.36 -0.65 -9.61 16 22 N 0.00 -0.05 13.42 37.02 0.50 0.45 16 23 N -0.28 -4.34 8.44 37.02 0.31 -4.03 16 24 H 0.49 2.59 8.96 -340.35 -3.05 -0.46 16 25 N -0.31 -6.40 12.90 -52.33 -0.68 -7.07 16 26 C 0.15 3.23 11.92 85.19 1.02 4.24 16 27 N -0.32 -8.23 12.62 -56.88 -0.72 -8.95 16 28 N -0.31 -8.14 3.89 -191.85 -0.75 -8.88 16 29 C 0.18 4.21 10.95 83.34 0.91 5.12 16 30 H 0.10 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.08 2.77 7.84 -2.91 -0.02 2.75 16 32 H 0.12 3.01 6.84 -2.91 -0.02 2.99 16 33 H 0.06 2.21 6.97 -2.39 -0.02 2.19 16 34 H 0.08 2.23 5.80 -2.39 -0.01 2.21 16 35 H -0.01 -0.41 6.70 -2.38 -0.02 -0.42 16 36 H 0.01 0.38 7.84 -2.39 -0.02 0.36 16 37 H 0.26 14.07 8.31 -92.70 -0.77 13.29 16 38 H 0.07 1.58 6.35 -2.39 -0.02 1.57 16 39 H 0.09 2.32 7.82 -2.38 -0.02 2.31 16 40 H 0.20 3.51 7.99 -2.91 -0.02 3.49 16 41 H 0.24 3.13 8.06 -2.91 -0.02 3.11 16 42 H 0.20 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -70.43 365.73 -0.09 -70.52 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -1.96 Total: 8.12 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 7.78 Total: 4.76 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -7.94 Total: -128.23 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -70.43 -0.09 -70.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588632187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 325.305 kcal (2) G-P(sol) polarization free energy of solvation -70.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 254.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 254.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds