Wall clock time and date at job start Sat Apr 11 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00336 * 90.00128 * 4 3 2 6 6 O 1.21274 * 120.00360 * 179.97438 * 5 4 3 7 7 C 1.50708 * 119.99656 * 359.97438 * 5 4 3 8 8 C 1.52998 * 109.46712 * 180.02562 * 7 5 4 9 9 F 1.39900 * 109.47145 * 299.99729 * 8 7 5 10 10 F 1.39901 * 109.47291 * 59.99811 * 8 7 5 11 11 C 1.53007 * 109.46873 * 179.97438 * 8 7 5 12 12 F 1.39901 * 109.46974 * 179.97438 * 11 8 7 13 13 F 1.39900 * 109.47313 * 299.99993 * 11 8 7 14 14 C 1.46499 * 119.99661 * 269.99401 * 4 3 2 15 15 H 1.09003 * 110.64412 * 1.69198 * 14 4 3 16 16 C 1.55156 * 110.71821 * 125.02667 * 14 4 3 17 17 C 1.54911 * 101.58019 * 153.86133 * 16 14 4 18 18 N 1.47418 * 104.83398 * 322.99600 * 17 16 14 19 19 C 1.36936 * 125.64532 * 204.16129 * 18 17 16 20 20 H 1.08007 * 120.00179 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00186 * 359.95875 * 19 18 17 22 22 N 1.31616 * 120.00179 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00179 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47344 * 89.99670 * 23 21 19 25 25 H 1.48503 * 109.47519 * 210.00161 * 23 21 19 26 26 H 1.48501 * 109.47321 * 329.99886 * 23 21 19 27 27 C 1.47023 * 108.70608 * 24.12467 * 18 17 16 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 32 32 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09004 * 109.46961 * 300.00007 * 7 5 4 36 36 H 1.08990 * 109.47216 * 60.00318 * 7 5 4 37 37 H 1.08996 * 109.46641 * 60.00517 * 11 8 7 38 38 H 1.08993 * 111.00373 * 271.94051 * 16 14 4 39 39 H 1.08999 * 111.00332 * 35.79171 * 16 14 4 40 40 H 1.08997 * 110.36937 * 204.14970 * 17 16 14 41 41 H 1.09010 * 110.36436 * 81.83194 * 17 16 14 42 42 H 0.96999 * 120.00433 * 180.02562 * 22 21 19 43 43 H 1.08998 * 109.87904 * 239.52221 * 27 18 17 44 44 H 1.09000 * 110.00970 * 118.43312 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1785 1.4427 -1.1680 6 8 5.3912 1.4431 -1.1686 7 6 3.4244 1.4423 -2.4729 8 6 4.4182 1.4420 -3.6361 9 9 5.2225 2.5843 -3.5627 10 9 5.2225 0.2997 -3.5620 11 6 3.6526 1.4410 -4.9609 12 9 4.5614 1.4413 -6.0246 13 9 2.8486 0.2985 -5.0341 14 6 4.2380 1.4424 1.2678 15 1 3.5475 1.4123 2.1107 16 6 5.2338 0.2540 1.3263 17 6 6.3054 0.7941 2.3059 18 7 6.4178 2.2293 1.9884 19 6 7.5102 3.0177 2.2338 20 1 7.4939 4.0629 1.9621 21 6 8.6385 2.4737 2.8320 22 7 8.6582 1.2003 3.1639 23 14 10.1284 3.5494 3.1674 24 1 10.0083 4.1543 4.5183 25 1 11.3605 2.7228 3.1030 26 1 10.2011 4.6264 2.1476 27 6 5.1632 2.6737 1.3638 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 2.7980 0.5521 -2.5303 36 1 2.7975 2.3320 -2.5304 37 1 3.0258 2.3308 -5.0189 38 1 4.7534 -0.6389 1.7262 39 1 5.6653 0.0572 0.3449 40 1 7.2588 0.2928 2.1392 41 1 5.9796 0.6581 3.3372 42 1 9.4465 0.8202 3.5823 43 1 5.3640 3.0653 0.3666 44 1 4.6938 3.4434 1.9765 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664678721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:02 Heat of formation + Delta-G solvation = -223.834631 kcal Electronic energy + Delta-G solvation = -32049.618575 eV Core-core repulsion = 27115.799979 eV Total energy + Delta-G solvation = -4933.818596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.85129 -49.61903 -48.50419 -48.05870 -41.42358 -38.55666 -37.13637 -34.72768 -33.76024 -33.18909 -31.06259 -29.48413 -28.34939 -26.92441 -26.24267 -23.82137 -22.72758 -22.26901 -21.98400 -20.20787 -19.50654 -19.22376 -18.88873 -18.66710 -17.82486 -17.73249 -17.54939 -16.87260 -16.51285 -16.30395 -15.86816 -15.59094 -15.49311 -15.26416 -15.13235 -15.01378 -14.71136 -14.62362 -14.57097 -14.26425 -14.14493 -13.89047 -13.76187 -13.57714 -13.40363 -13.15363 -13.00250 -12.93258 -12.73131 -12.69091 -12.40858 -12.21452 -12.04958 -11.98828 -11.85561 -11.83995 -11.58760 -11.34349 -10.75278 -10.59038 -9.61544 -8.86980 -7.77863 -5.21390 1.41562 1.45518 1.51684 1.54179 1.58783 1.95992 2.48769 2.54436 2.78989 2.87508 3.00111 3.31083 3.50809 3.71906 3.73828 3.76614 3.89187 3.99014 4.08114 4.18713 4.25513 4.26651 4.33811 4.47986 4.63664 4.68742 4.75320 4.79996 4.97259 4.98705 5.02296 5.08919 5.31353 5.35370 5.41445 5.55213 5.62675 5.75408 5.79388 6.29743 6.41839 7.09734 7.19986 7.78213 8.41810 9.24081 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.011826 B = 0.003859 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.076840 B = 7254.734661 C = 8985.462639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.098 3.902 4 N -0.596 5.596 5 C 0.498 3.502 6 O -0.555 6.555 7 C -0.181 4.181 8 C 0.247 3.753 9 F -0.188 7.188 10 F -0.201 7.201 11 C 0.245 3.755 12 F -0.201 7.201 13 F -0.182 7.182 14 C 0.155 3.845 15 H 0.120 0.880 16 C -0.141 4.141 17 C 0.161 3.839 18 N -0.619 5.619 19 C -0.237 4.237 20 H 0.074 0.926 21 C -0.069 4.069 22 N -0.950 5.950 23 Si 0.981 3.019 24 H -0.279 1.279 25 H -0.293 1.293 26 H -0.274 1.274 27 C 0.131 3.869 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.160 0.840 36 H 0.180 0.820 37 H 0.206 0.794 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.062 0.938 41 H -0.004 1.004 42 H 0.246 0.754 43 H 0.016 0.984 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.974 -0.216 -14.542 28.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C -0.022 4.022 4 N -0.328 5.328 5 C 0.285 3.715 6 O -0.432 6.432 7 C -0.220 4.220 8 C 0.209 3.791 9 F -0.169 7.169 10 F -0.182 7.182 11 C 0.191 3.809 12 F -0.183 7.183 13 F -0.163 7.163 14 C 0.051 3.949 15 H 0.138 0.862 16 C -0.180 4.180 17 C 0.036 3.964 18 N -0.345 5.345 19 C -0.366 4.366 20 H 0.092 0.908 21 C -0.261 4.261 22 N -0.600 5.600 23 Si 0.809 3.191 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.199 1.199 27 C 0.005 3.995 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.178 0.822 36 H 0.197 0.803 37 H 0.222 0.778 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.014 0.986 42 H 0.056 0.944 43 H 0.034 0.966 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -24.114 -0.235 -14.489 28.133 hybrid contribution 1.812 0.084 0.470 1.873 sum -22.303 -0.151 -14.019 26.343 Atomic orbital electron populations 1.21672 0.93184 1.02347 1.03037 1.21972 0.97520 0.96370 1.02309 1.22158 0.76028 0.98092 1.05967 1.47954 1.08115 1.72657 1.04049 1.20705 0.87755 0.76699 0.86311 1.90919 1.15981 1.48799 1.87504 1.23033 0.98401 1.12091 0.88503 1.22414 0.85513 0.72681 0.98458 1.93097 1.76137 1.50489 1.97208 1.93075 1.76536 1.51251 1.97387 1.23264 0.84763 0.91406 0.81501 1.93044 1.69563 1.97121 1.58530 1.93058 1.72815 1.54197 1.96193 1.21900 0.92903 0.94039 0.86055 0.86187 1.23168 0.97131 0.97508 1.00203 1.21576 0.97559 0.84352 0.92943 1.44575 1.12294 1.07105 1.70501 1.19410 0.92327 0.92422 1.32445 0.90790 1.25644 1.01060 0.97778 1.01628 1.70074 1.29126 1.12524 1.48273 0.85035 0.78476 0.77473 0.78092 1.20576 1.21910 1.19922 1.21617 0.86944 0.95679 0.95271 0.92637 0.92136 0.90698 0.91907 0.92953 0.86758 0.88591 0.82191 0.80261 0.77753 0.90121 0.92452 0.91967 0.98598 0.94415 0.96596 0.95637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.91 71.98 0.71 -0.30 16 2 C -0.14 -1.66 6.26 30.60 0.19 -1.47 16 3 C 0.10 1.21 5.19 86.38 0.45 1.66 16 4 N -0.60 -14.82 2.54 -791.24 -2.01 -16.83 16 5 C 0.50 14.47 6.54 87.66 0.57 15.04 16 6 O -0.55 -24.17 11.18 -3.01 -0.03 -24.20 16 7 C -0.18 -2.83 3.73 29.85 0.11 -2.72 16 8 C 0.25 5.56 1.40 30.60 0.04 5.60 16 9 F -0.19 -5.58 16.12 44.97 0.73 -4.86 16 10 F -0.20 -6.58 16.10 44.97 0.72 -5.85 16 11 C 0.24 3.27 4.83 71.98 0.35 3.62 16 12 F -0.20 -4.16 17.30 44.97 0.78 -3.38 16 13 F -0.18 -2.50 16.80 44.97 0.76 -1.75 16 14 C 0.16 5.29 3.44 46.18 0.16 5.45 16 15 H 0.12 3.39 7.88 -2.39 -0.02 3.37 16 16 C -0.14 -5.89 6.40 31.99 0.20 -5.69 16 17 C 0.16 8.69 5.89 86.86 0.51 9.20 16 18 N -0.62 -35.02 3.39 -691.99 -2.35 -37.37 16 19 C -0.24 -14.55 10.27 84.03 0.86 -13.68 16 20 H 0.07 4.40 7.83 -2.91 -0.02 4.38 16 21 C -0.07 -4.22 5.49 84.86 0.47 -3.76 16 22 N -0.95 -60.67 10.09 21.65 0.22 -60.45 16 23 Si 0.98 49.05 29.55 68.60 2.03 51.08 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 26 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 27 C 0.13 5.90 6.49 86.73 0.56 6.46 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.06 0.75 7.22 -2.39 -0.02 0.73 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 0.56 6.44 -2.39 -0.02 0.54 16 34 H 0.10 1.02 7.96 -2.39 -0.02 1.00 16 35 H 0.16 1.53 6.84 -2.39 -0.02 1.51 16 36 H 0.18 0.84 7.40 -2.39 -0.02 0.83 16 37 H 0.21 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.06 2.73 5.81 -2.39 -0.01 2.72 16 40 H 0.06 3.91 5.87 -2.39 -0.01 3.90 16 41 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 42 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.02 0.78 6.28 -2.39 -0.01 0.77 16 44 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -90.43 363.23 7.06 -83.37 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: 1.02 Total: 0.82 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 5.20 Total: 19.42 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -4.14 Total: -114.65 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.03 Total: -24.20 kcal Atomic # 9 Polarization: -18.82 SS G_CDS: 2.98 Total: -15.84 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.03 Total: 51.08 kcal Total: -90.43 7.06 -83.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664678721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.462 kcal (2) G-P(sol) polarization free energy of solvation -90.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds