Wall clock time and date at job start Sat Apr 11 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46880 * 2 1 4 4 H 1.08999 * 109.47329 * 54.99647 * 3 2 1 5 5 O 1.42898 * 109.47056 * 294.99917 * 3 2 1 6 6 C 1.35959 * 117.00146 * 94.14517 * 5 3 2 7 7 C 1.38663 * 120.05929 * 2.29182 * 6 5 3 8 8 C 1.38190 * 119.96776 * 179.72085 * 7 6 5 9 9 C 1.38261 * 120.09390 * 0.54997 * 8 7 6 10 10 C 1.38264 * 120.12622 * 359.72308 * 9 8 7 11 11 C 1.38333 * 120.02608 * 359.97438 * 10 9 8 12 12 F 1.35101 * 120.04140 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47025 * 175.00176 * 3 2 1 14 14 O 1.21287 * 120.00133 * 115.00139 * 13 3 2 15 15 N 1.34780 * 120.00051 * 294.99417 * 13 3 2 16 16 C 1.46496 * 120.00039 * 180.02562 * 15 13 3 17 17 C 1.52995 * 109.47120 * 180.02562 * 16 15 13 18 18 H 1.09005 * 109.46882 * 304.99986 * 17 16 15 19 19 O 1.42904 * 109.47520 * 64.99529 * 17 16 15 20 20 C 1.52993 * 109.47482 * 184.99920 * 17 16 15 21 21 N 1.46501 * 109.47602 * 179.97438 * 20 17 16 22 22 C 1.36939 * 120.00181 * 180.02562 * 21 20 17 23 23 H 1.08001 * 119.99878 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99738 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99547 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00430 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47340 * 90.00235 * 26 24 22 28 28 H 1.48499 * 109.47244 * 210.00726 * 26 24 22 29 29 H 1.48504 * 109.46897 * 330.00039 * 26 24 22 30 30 H 1.08996 * 109.47135 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47711 * 299.99978 * 1 2 3 32 32 H 1.09000 * 109.47576 * 60.00261 * 1 2 3 33 33 H 1.08998 * 109.47310 * 240.00436 * 2 1 3 34 34 H 1.08991 * 109.47318 * 119.99734 * 2 1 3 35 35 H 1.08002 * 120.01685 * 359.97029 * 7 6 5 36 36 H 1.07997 * 119.95344 * 180.27507 * 8 7 6 37 37 H 1.07993 * 119.93969 * 179.74670 * 9 8 7 38 38 H 1.07993 * 119.98379 * 179.97438 * 10 9 8 39 39 H 0.96998 * 119.99406 * 0.02562 * 15 13 3 40 40 H 1.09006 * 109.46827 * 300.00033 * 16 15 13 41 41 H 1.08997 * 109.47171 * 60.00238 * 16 15 13 42 42 H 0.96699 * 113.99738 * 60.00334 * 19 17 16 43 43 H 1.09005 * 109.47116 * 299.99922 * 20 17 16 44 44 H 1.09003 * 109.47447 * 59.99560 * 20 17 16 45 45 H 0.96997 * 119.99686 * 359.97438 * 21 20 17 46 46 H 0.97001 * 119.99596 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 0.5053 2.7960 -1.2114 7 6 -0.2249 2.9199 -0.0392 8 6 -1.3972 3.6515 -0.0302 9 6 -1.8492 4.2509 -1.1912 10 6 -1.1272 4.1253 -2.3636 11 6 0.0503 3.3993 -2.3770 12 9 0.7564 3.2767 -3.5223 13 6 3.5418 1.4444 0.1238 14 8 4.2249 1.8612 -0.7876 15 7 4.1259 0.9830 1.2474 16 6 5.5859 0.9853 1.3679 17 6 5.9861 0.4139 2.7296 18 1 5.4839 0.9723 3.5197 19 8 5.6030 -0.9610 2.8006 20 6 7.5013 0.5310 2.9065 21 7 7.8844 -0.0156 4.2106 22 6 9.1995 -0.0178 4.5925 23 1 9.9543 0.3829 3.9321 24 6 9.5625 -0.5362 5.8280 25 7 10.8266 -0.5388 6.1948 26 14 8.2572 -1.2299 6.9700 27 1 8.0766 -2.6778 6.6938 28 1 8.6839 -1.0444 8.3802 29 1 6.9732 -0.5189 6.7439 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3635 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5137 0.8899 35 1 0.1244 2.4481 0.8674 36 1 -1.9635 3.7515 0.8840 37 1 -2.7678 4.8187 -1.1823 38 1 -1.4825 4.5941 -3.2693 39 1 3.5796 0.6494 1.9761 40 1 6.0168 0.3723 0.5762 41 1 5.9562 2.0066 1.2790 42 1 6.0131 -1.5188 2.1255 43 1 8.0035 -0.0274 2.1164 44 1 7.7935 1.5797 2.8524 45 1 7.2065 -0.3751 4.8039 46 1 11.0802 -0.9007 7.0583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667918912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:10 Heat of formation + Delta-G solvation = -124.582105 kcal Electronic energy + Delta-G solvation = -29140.129841 eV Core-core repulsion = 24752.471897 eV Total energy + Delta-G solvation = -4387.657944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.06910 -41.17175 -39.68137 -38.12186 -37.54148 -34.80913 -34.28781 -33.92676 -31.53648 -31.20059 -30.52393 -29.77491 -27.88877 -25.46541 -23.92293 -22.94831 -22.62537 -21.98937 -21.54735 -20.44451 -19.20041 -18.12168 -17.76962 -17.36344 -16.82634 -16.58384 -16.37089 -16.16806 -15.71668 -15.38185 -15.34600 -15.04560 -14.68706 -14.54479 -14.25938 -14.14057 -13.81220 -13.48795 -13.31066 -13.28790 -12.95482 -12.76709 -12.52887 -12.42418 -12.39688 -12.17522 -12.06372 -11.90977 -11.52257 -11.34026 -11.06063 -10.91088 -10.88008 -10.24199 -10.13388 -9.79469 -9.59721 -9.40020 -9.33326 -8.96847 -8.62217 -7.29987 -5.81056 -3.17658 0.63741 0.77243 2.14619 2.27316 3.06513 3.14959 3.36121 3.40508 3.43676 3.79569 4.07422 4.13960 4.22377 4.34092 4.38345 4.45790 4.56230 4.59962 4.63642 4.74412 4.76763 4.88169 5.00676 5.05069 5.14135 5.37185 5.40352 5.46222 5.47189 5.55225 5.56502 5.60556 5.68150 5.72880 5.73529 5.77629 5.89061 6.10272 6.16537 6.36856 6.48944 6.78135 7.18605 7.69637 7.91046 7.94594 8.37297 9.16630 9.88364 10.07860 11.36889 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023507 B = 0.001935 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.833978 B =14466.277342 C =14853.603043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.140 4.140 3 C 0.065 3.935 4 H 0.104 0.896 5 O -0.274 6.274 6 C 0.102 3.898 7 C -0.187 4.187 8 C -0.088 4.088 9 C -0.131 4.131 10 C -0.116 4.116 11 C 0.070 3.930 12 F -0.130 7.130 13 C 0.512 3.488 14 O -0.515 6.515 15 N -0.716 5.716 16 C 0.091 3.909 17 C 0.086 3.914 18 H 0.105 0.895 19 O -0.557 6.557 20 C 0.131 3.869 21 N -0.749 5.749 22 C -0.249 4.249 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.932 5.932 26 Si 0.889 3.111 27 H -0.283 1.283 28 H -0.292 1.292 29 H -0.277 1.277 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.405 0.595 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.377 0.623 43 H 0.033 0.967 44 H 0.038 0.962 45 H 0.366 0.634 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.766 6.242 -14.401 34.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.178 4.178 3 C 0.005 3.995 4 H 0.122 0.878 5 O -0.186 6.186 6 C 0.055 3.945 7 C -0.206 4.206 8 C -0.106 4.106 9 C -0.149 4.149 10 C -0.135 4.135 11 C 0.050 3.950 12 F -0.108 7.108 13 C 0.296 3.704 14 O -0.389 6.389 15 N -0.370 5.370 16 C -0.033 4.033 17 C 0.026 3.974 18 H 0.123 0.877 19 O -0.362 6.362 20 C 0.002 3.998 21 N -0.395 5.395 22 C -0.379 4.379 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.580 5.580 26 Si 0.719 3.281 27 H -0.210 1.210 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.240 0.760 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.225 0.775 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.200 0.800 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -30.167 6.762 -14.785 34.269 hybrid contribution -0.563 -0.834 0.785 1.276 sum -30.730 5.928 -13.999 34.285 Atomic orbital electron populations 1.21957 0.94308 1.02893 1.02306 1.22026 0.97506 0.93594 1.04681 1.22436 0.93467 0.95575 0.88062 0.87835 1.86297 1.36184 1.62427 1.33656 1.19071 0.87620 0.94117 0.93676 1.21277 0.97635 1.04553 0.97119 1.21024 0.95241 0.95644 0.98710 1.20954 1.00696 1.01374 0.91887 1.21064 0.93137 0.98927 1.00356 1.17012 0.93447 1.03643 0.80917 1.91533 1.77764 1.94567 1.46977 1.20102 0.89018 0.78429 0.82845 1.90778 1.64623 1.44948 1.38576 1.45791 1.08229 1.64808 1.18211 1.22144 0.79266 1.03043 0.98850 1.22443 0.96877 0.82991 0.95111 0.87740 1.86535 1.72020 1.18644 1.59019 1.21166 0.90613 0.98183 0.89818 1.42549 1.06296 1.74746 1.15947 1.19042 0.83176 1.34524 1.01136 0.89246 1.24688 0.95861 1.00941 0.97586 1.69712 1.14823 1.51378 1.22061 0.86482 0.81532 0.79334 0.80735 1.21005 1.21800 1.20328 0.91558 0.92107 0.92140 0.89814 0.89209 0.84078 0.84898 0.84774 0.83993 0.76028 0.90581 0.90001 0.77505 0.94945 0.94449 0.80030 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 8.45 37.16 0.31 -0.60 16 2 C -0.14 -0.98 5.61 -26.73 -0.15 -1.13 16 3 C 0.06 0.58 2.57 -27.88 -0.07 0.51 16 4 H 0.10 0.66 5.38 -51.93 -0.28 0.38 16 5 O -0.27 -3.26 9.07 -39.47 -0.36 -3.62 16 6 C 0.10 1.01 5.34 -39.18 -0.21 0.80 16 7 C -0.19 -1.29 7.16 -39.44 -0.28 -1.57 16 8 C -0.09 -0.48 10.04 -39.59 -0.40 -0.87 16 9 C -0.13 -0.71 10.04 -39.56 -0.40 -1.11 16 10 C -0.12 -0.82 10.02 -39.54 -0.40 -1.22 16 11 C 0.07 0.71 7.31 -39.30 -0.29 0.42 16 12 F -0.13 -1.62 17.11 2.25 0.04 -1.58 16 13 C 0.51 6.10 7.18 -10.99 -0.08 6.02 16 14 O -0.52 -8.61 16.51 -14.31 -0.24 -8.84 16 15 N -0.72 -7.07 5.40 -60.30 -0.33 -7.40 16 16 C 0.09 1.05 5.31 -4.05 -0.02 1.03 16 17 C 0.09 1.13 3.09 -26.74 -0.08 1.04 16 18 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 19 O -0.56 -7.38 13.03 -35.23 -0.46 -7.84 16 20 C 0.13 2.31 5.92 -4.04 -0.02 2.28 16 21 N -0.75 -17.27 5.30 -59.91 -0.32 -17.59 16 22 C -0.25 -6.99 10.47 -15.06 -0.16 -7.14 16 23 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 25 N -0.93 -29.15 13.97 55.49 0.78 -28.38 16 26 Si 0.89 22.06 27.74 -169.99 -4.71 17.35 16 27 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.26 6.80 -51.93 -0.35 -0.09 16 32 H 0.06 0.43 6.27 -51.93 -0.33 0.11 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.49 7.77 -51.93 -0.40 0.08 16 35 H 0.14 0.70 4.54 -52.49 -0.24 0.46 16 36 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 37 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 38 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.40 3.06 8.18 -40.82 -0.33 2.73 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.38 4.11 9.05 45.56 0.41 4.53 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.37 8.39 5.41 -40.82 -0.22 8.17 16 46 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -36.68 383.80 -7.71 -44.39 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.56 Total: 9.20 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.34 Total: -1.48 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.13 Total: -53.37 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -1.05 Total: -20.30 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.68 -7.71 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667918912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.187 kcal (2) G-P(sol) polarization free energy of solvation -36.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds