Wall clock time and date at job start Sat Apr 11 2020 06:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46880 * 2 1 4 4 H 1.08999 * 109.47329 * 54.99647 * 3 2 1 5 5 O 1.42898 * 109.47056 * 294.99917 * 3 2 1 6 6 C 1.35959 * 117.00146 * 94.14517 * 5 3 2 7 7 C 1.38663 * 120.05929 * 2.29182 * 6 5 3 8 8 C 1.38190 * 119.96776 * 179.72085 * 7 6 5 9 9 C 1.38261 * 120.09390 * 0.54997 * 8 7 6 10 10 C 1.38264 * 120.12622 * 359.72308 * 9 8 7 11 11 C 1.38333 * 120.02608 * 359.97438 * 10 9 8 12 12 F 1.35101 * 120.04140 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47025 * 175.00176 * 3 2 1 14 14 O 1.21287 * 120.00133 * 115.00139 * 13 3 2 15 15 N 1.34780 * 120.00051 * 294.99417 * 13 3 2 16 16 C 1.46496 * 120.00039 * 180.02562 * 15 13 3 17 17 C 1.52995 * 109.47120 * 180.02562 * 16 15 13 18 18 H 1.09005 * 109.46882 * 304.99986 * 17 16 15 19 19 O 1.42904 * 109.47520 * 64.99529 * 17 16 15 20 20 C 1.52993 * 109.47482 * 184.99920 * 17 16 15 21 21 N 1.46501 * 109.47602 * 179.97438 * 20 17 16 22 22 C 1.36939 * 120.00181 * 180.02562 * 21 20 17 23 23 H 1.08001 * 119.99878 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99738 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99547 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00430 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47340 * 90.00235 * 26 24 22 28 28 H 1.48499 * 109.47244 * 210.00726 * 26 24 22 29 29 H 1.48504 * 109.46897 * 330.00039 * 26 24 22 30 30 H 1.08996 * 109.47135 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47711 * 299.99978 * 1 2 3 32 32 H 1.09000 * 109.47576 * 60.00261 * 1 2 3 33 33 H 1.08998 * 109.47310 * 240.00436 * 2 1 3 34 34 H 1.08991 * 109.47318 * 119.99734 * 2 1 3 35 35 H 1.08002 * 120.01685 * 359.97029 * 7 6 5 36 36 H 1.07997 * 119.95344 * 180.27507 * 8 7 6 37 37 H 1.07993 * 119.93969 * 179.74670 * 9 8 7 38 38 H 1.07993 * 119.98379 * 179.97438 * 10 9 8 39 39 H 0.96998 * 119.99406 * 0.02562 * 15 13 3 40 40 H 1.09006 * 109.46827 * 300.00033 * 16 15 13 41 41 H 1.08997 * 109.47171 * 60.00238 * 16 15 13 42 42 H 0.96699 * 113.99738 * 60.00334 * 19 17 16 43 43 H 1.09005 * 109.47116 * 299.99922 * 20 17 16 44 44 H 1.09003 * 109.47447 * 59.99560 * 20 17 16 45 45 H 0.96997 * 119.99686 * 359.97438 * 21 20 17 46 46 H 0.97001 * 119.99596 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 0.5053 2.7960 -1.2114 7 6 -0.2249 2.9199 -0.0392 8 6 -1.3972 3.6515 -0.0302 9 6 -1.8492 4.2509 -1.1912 10 6 -1.1272 4.1253 -2.3636 11 6 0.0503 3.3993 -2.3770 12 9 0.7564 3.2767 -3.5223 13 6 3.5418 1.4444 0.1238 14 8 4.2249 1.8612 -0.7876 15 7 4.1259 0.9830 1.2474 16 6 5.5859 0.9853 1.3679 17 6 5.9861 0.4139 2.7296 18 1 5.4839 0.9723 3.5197 19 8 5.6030 -0.9610 2.8006 20 6 7.5013 0.5310 2.9065 21 7 7.8844 -0.0156 4.2106 22 6 9.1995 -0.0178 4.5925 23 1 9.9543 0.3829 3.9321 24 6 9.5625 -0.5362 5.8280 25 7 10.8266 -0.5388 6.1948 26 14 8.2572 -1.2299 6.9700 27 1 8.0766 -2.6778 6.6938 28 1 8.6839 -1.0444 8.3802 29 1 6.9732 -0.5189 6.7439 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3635 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5137 0.8899 35 1 0.1244 2.4481 0.8674 36 1 -1.9635 3.7515 0.8840 37 1 -2.7678 4.8187 -1.1823 38 1 -1.4825 4.5941 -3.2693 39 1 3.5796 0.6494 1.9761 40 1 6.0168 0.3723 0.5762 41 1 5.9562 2.0066 1.2790 42 1 6.0131 -1.5188 2.1255 43 1 8.0035 -0.0274 2.1164 44 1 7.7935 1.5797 2.8524 45 1 7.2065 -0.3751 4.8039 46 1 11.0802 -0.9007 7.0583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667918912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:09 Heat of formation + Delta-G solvation = -153.067835 kcal Electronic energy + Delta-G solvation = -29141.365075 eV Core-core repulsion = 24752.471897 eV Total energy + Delta-G solvation = -4388.893178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.85098 -41.89343 -40.51793 -39.08717 -38.35460 -36.22518 -35.57648 -34.61222 -33.47706 -31.72323 -31.20690 -30.89287 -28.77895 -26.83778 -24.49090 -24.09583 -23.49755 -22.87712 -22.81370 -21.31757 -19.85745 -19.78378 -18.90379 -18.01794 -17.59641 -17.51913 -17.27981 -17.12685 -16.53744 -16.49809 -16.29450 -15.98886 -15.61891 -15.47758 -15.43292 -15.17565 -14.88621 -14.78991 -14.30192 -14.10413 -14.03101 -13.83735 -13.46676 -13.33402 -13.25060 -13.08151 -12.97239 -12.80760 -12.65476 -12.39218 -12.23341 -12.05764 -11.89039 -11.83487 -11.59551 -11.19872 -11.02273 -10.83563 -10.27459 -9.91927 -9.32241 -9.22478 -8.03667 -5.37875 0.12283 0.24476 1.35952 1.39839 1.42247 1.43836 1.51171 2.36228 2.48907 2.60153 3.22870 3.25899 3.28948 3.43777 3.52596 3.54306 3.64535 3.80627 3.92695 3.97666 4.07682 4.16007 4.18022 4.29911 4.34004 4.37681 4.51982 4.57068 4.69110 4.69787 4.91957 4.92955 4.99149 5.07259 5.09254 5.14642 5.23062 5.25772 5.30222 5.43108 5.66097 5.73364 6.16958 6.19547 6.39611 6.74489 7.05223 7.07463 7.82172 8.02321 9.17553 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023507 B = 0.001935 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.833978 B =14466.277342 C =14853.603043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C 0.067 3.933 4 H 0.135 0.865 5 O -0.310 6.310 6 C 0.079 3.921 7 C -0.186 4.186 8 C -0.080 4.080 9 C -0.125 4.125 10 C -0.118 4.118 11 C 0.026 3.974 12 F -0.156 7.156 13 C 0.510 3.490 14 O -0.572 6.572 15 N -0.699 5.699 16 C 0.099 3.901 17 C 0.109 3.891 18 H 0.116 0.884 19 O -0.561 6.561 20 C 0.122 3.878 21 N -0.751 5.751 22 C -0.239 4.239 23 H 0.055 0.945 24 C -0.066 4.066 25 N -0.984 5.984 26 Si 0.963 3.037 27 H -0.279 1.279 28 H -0.297 1.297 29 H -0.250 1.250 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.156 0.844 39 H 0.420 0.580 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.388 0.612 43 H 0.033 0.967 44 H 0.037 0.963 45 H 0.370 0.630 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.069 6.191 -12.581 37.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.008 3.992 4 H 0.152 0.848 5 O -0.223 6.223 6 C 0.033 3.967 7 C -0.204 4.204 8 C -0.098 4.098 9 C -0.143 4.143 10 C -0.136 4.136 11 C 0.006 3.994 12 F -0.135 7.135 13 C 0.296 3.704 14 O -0.451 6.451 15 N -0.353 5.353 16 C -0.025 4.025 17 C 0.049 3.951 18 H 0.133 0.867 19 O -0.368 6.368 20 C -0.005 4.005 21 N -0.397 5.397 22 C -0.370 4.370 23 H 0.073 0.927 24 C -0.257 4.257 25 N -0.634 5.634 26 Si 0.789 3.211 27 H -0.205 1.205 28 H -0.224 1.224 29 H -0.174 1.174 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.130 0.870 35 H 0.180 0.820 36 H 0.186 0.814 37 H 0.184 0.816 38 H 0.173 0.827 39 H 0.258 0.742 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.238 0.762 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.204 0.796 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -34.537 6.704 -12.978 37.499 hybrid contribution 0.776 -0.750 0.133 1.088 sum -33.761 5.954 -12.845 36.609 Atomic orbital electron populations 1.21939 0.93069 1.03505 1.02537 1.22035 0.98506 0.92097 1.04647 1.22577 0.91141 0.97042 0.88432 0.84778 1.86244 1.37542 1.63296 1.35242 1.19342 0.87736 0.94834 0.94759 1.21543 0.97760 1.04556 0.96542 1.21495 0.94461 0.93856 0.99946 1.21393 1.01189 1.00647 0.91047 1.21344 0.92145 0.98201 1.01936 1.17602 0.95023 1.06123 0.80644 1.91450 1.78631 1.95033 1.48416 1.20712 0.90320 0.77174 0.82195 1.90754 1.66099 1.47610 1.40593 1.45594 1.07591 1.63904 1.18195 1.21908 0.80353 1.02515 0.97758 1.22117 0.93405 0.83475 0.96114 0.86677 1.86515 1.71947 1.18566 1.59739 1.21395 0.94201 0.97600 0.87313 1.42499 1.04343 1.74991 1.17885 1.19033 0.84795 1.32785 1.00395 0.92737 1.25575 0.98226 1.02236 0.99697 1.69901 1.17441 1.53373 1.22675 0.85301 0.79473 0.78684 0.77598 1.20507 1.22373 1.17394 0.90766 0.89850 0.93860 0.91974 0.87047 0.82029 0.81446 0.81620 0.82653 0.74168 0.90926 0.90614 0.76236 0.94867 0.94549 0.79561 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.45 71.98 0.61 -0.79 16 2 C -0.14 -1.65 5.61 30.59 0.17 -1.48 16 3 C 0.07 1.13 2.57 29.85 0.08 1.20 16 4 H 0.14 1.31 5.38 -2.39 -0.01 1.29 16 5 O -0.31 -7.59 9.07 -74.09 -0.67 -8.26 16 6 C 0.08 1.55 5.34 22.53 0.12 1.67 16 7 C -0.19 -2.06 7.16 22.36 0.16 -1.90 16 8 C -0.08 -0.55 10.04 22.26 0.22 -0.33 16 9 C -0.12 -0.96 10.04 22.28 0.22 -0.73 16 10 C -0.12 -1.56 10.02 22.30 0.22 -1.34 16 11 C 0.03 0.54 7.31 22.45 0.16 0.71 16 12 F -0.16 -4.28 17.11 44.97 0.77 -3.51 16 13 C 0.51 11.82 7.18 87.66 0.63 12.45 16 14 O -0.57 -19.72 16.51 15.94 0.26 -19.46 16 15 N -0.70 -12.35 5.40 -463.06 -2.50 -14.85 16 16 C 0.10 2.14 5.31 86.38 0.46 2.60 16 17 C 0.11 2.59 3.09 30.59 0.09 2.68 16 18 H 0.12 2.58 8.14 -2.38 -0.02 2.56 16 19 O -0.56 -13.07 13.03 -148.98 -1.94 -15.01 16 20 C 0.12 4.16 5.92 86.38 0.51 4.68 16 21 N -0.75 -33.57 5.30 -343.45 -1.82 -35.39 16 22 C -0.24 -13.51 10.47 84.03 0.88 -12.63 16 23 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 24 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 25 N -0.98 -62.91 13.97 21.65 0.30 -62.60 16 26 Si 0.96 44.97 27.74 68.60 1.90 46.87 16 27 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 28 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 29 H -0.25 -10.40 6.52 99.48 0.65 -9.75 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.37 6.80 -2.38 -0.02 0.36 16 32 H 0.04 0.57 6.27 -2.39 -0.01 0.55 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 0.85 7.77 -2.39 -0.02 0.83 16 35 H 0.16 0.95 4.54 -2.91 -0.01 0.94 16 36 H 0.17 0.03 8.06 -2.91 -0.02 0.00 16 37 H 0.17 0.21 8.06 -2.91 -0.02 0.19 16 38 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.42 4.88 8.18 -92.71 -0.76 4.12 16 40 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.39 7.40 9.05 -74.06 -0.67 6.73 16 43 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 45 H 0.37 15.90 5.41 -92.71 -0.50 15.39 16 46 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -84.29 383.80 0.37 -83.92 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.94 Total: 24.89 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 5.01 Total: 3.39 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -4.02 Total: -112.84 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -2.35 Total: -42.73 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.77 Total: -3.51 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.87 kcal Total: -84.29 0.37 -83.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667918912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.147 kcal (2) G-P(sol) polarization free energy of solvation -84.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds