Wall clock time and date at job start Sat Apr 11 2020 06:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 H 1.08996 * 109.47527 * 54.99785 * 3 2 1 5 5 O 1.42902 * 109.47057 * 294.99580 * 3 2 1 6 6 C 1.35960 * 116.99644 * 99.40061 * 5 3 2 7 7 C 1.38659 * 120.06449 * 354.33675 * 6 5 3 8 8 C 1.38183 * 119.96970 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.09246 * 0.02562 * 8 7 6 10 10 C 1.38253 * 120.12715 * 359.97438 * 9 8 7 11 11 C 1.38332 * 120.03266 * 0.25646 * 10 9 8 12 12 F 1.35090 * 120.04976 * 179.72390 * 11 10 9 13 13 C 1.50704 * 109.46862 * 175.00098 * 3 2 1 14 14 O 1.21279 * 119.99972 * 120.00111 * 13 3 2 15 15 N 1.34776 * 120.00043 * 299.99216 * 13 3 2 16 16 C 1.46495 * 120.00161 * 180.02562 * 15 13 3 17 17 C 1.52994 * 109.47203 * 180.02562 * 16 15 13 18 18 H 1.09002 * 109.47416 * 60.00065 * 17 16 15 19 19 O 1.42907 * 109.46992 * 299.99792 * 17 16 15 20 20 C 1.53001 * 109.47171 * 179.97438 * 17 16 15 21 21 N 1.46507 * 109.47028 * 184.99912 * 20 17 16 22 22 C 1.36939 * 119.99744 * 180.02562 * 21 20 17 23 23 H 1.08000 * 119.99736 * 359.97438 * 22 21 20 24 24 C 1.38806 * 119.99834 * 180.02562 * 22 21 20 25 25 N 1.31623 * 120.00333 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99945 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47252 * 89.99937 * 26 24 22 28 28 H 1.48501 * 109.47034 * 209.99775 * 26 24 22 29 29 H 1.48506 * 109.47194 * 329.99617 * 26 24 22 30 30 H 1.08999 * 109.47177 * 300.00349 * 1 2 3 31 31 H 1.09005 * 109.47016 * 60.00224 * 1 2 3 32 32 H 1.08998 * 109.47476 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47177 * 239.99651 * 2 1 3 34 34 H 1.08995 * 109.47058 * 119.99748 * 2 1 3 35 35 H 1.07994 * 120.01686 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.95136 * 179.97438 * 8 7 6 37 37 H 1.08000 * 119.93126 * 179.97438 * 9 8 7 38 38 H 1.07996 * 119.98408 * 179.97438 * 10 9 8 39 39 H 0.97004 * 119.99727 * 0.02562 * 15 13 3 40 40 H 1.09007 * 109.47076 * 300.00664 * 16 15 13 41 41 H 1.09002 * 109.47321 * 59.99943 * 16 15 13 42 42 H 0.96699 * 113.99595 * 299.99887 * 19 17 16 43 43 H 1.08994 * 109.47216 * 305.00121 * 20 17 16 44 44 H 1.09001 * 109.47074 * 65.00343 * 20 17 16 45 45 H 0.96995 * 120.00091 * 359.97438 * 21 20 17 46 46 H 0.96991 * 120.00312 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 8 1.6619 2.0814 -1.2211 6 6 0.5658 2.8849 -1.1837 7 6 -0.1989 2.9634 -0.0297 8 6 -1.3122 3.7811 0.0064 9 6 -1.6652 4.5210 -1.1070 10 6 -0.9056 4.4458 -2.2597 11 6 0.2073 3.6252 -2.3031 12 9 0.9466 3.5472 -3.4310 13 6 3.5419 1.4443 0.1238 14 8 4.2216 1.9436 -0.7477 15 7 4.1297 0.8913 1.2032 16 6 5.5897 0.8935 1.3238 17 6 5.9945 0.2090 2.6308 18 1 5.6315 -0.8189 2.6303 19 8 5.4242 0.9149 3.7348 20 6 7.5193 0.2107 2.7565 21 7 7.9121 -0.5482 3.9466 22 6 9.2368 -0.6838 4.2657 23 1 9.9920 -0.2316 3.6400 24 6 9.6090 -1.4033 5.3929 25 7 8.6886 -1.9548 6.1553 26 14 11.4161 -1.5889 5.8279 27 1 11.8303 -0.4689 6.7108 28 1 11.6255 -2.8787 6.5334 29 1 12.2292 -1.5665 4.5855 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.0754 2.3856 0.8405 36 1 -1.9079 3.8416 0.9052 37 1 -2.5361 5.1590 -1.0761 38 1 -1.1836 5.0244 -3.1281 39 1 3.5860 0.4917 1.9001 40 1 6.0247 0.3547 0.4819 41 1 5.9527 1.9213 1.3240 42 1 5.7040 1.8384 3.7977 43 1 7.9574 -0.2496 1.8710 44 1 7.8753 1.2370 2.8463 45 1 7.2338 -0.9540 4.5087 46 1 8.9487 -2.4579 6.9427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667918915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:20 Heat of formation + Delta-G solvation = -129.083585 kcal Electronic energy + Delta-G solvation = -29055.606224 eV Core-core repulsion = 24667.753081 eV Total energy + Delta-G solvation = -4387.853143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.03365 -41.10300 -39.60832 -38.02863 -37.43087 -34.74806 -34.16055 -33.82934 -31.37488 -31.15441 -30.44088 -29.46647 -27.70977 -25.26095 -23.87594 -22.92005 -22.82033 -22.03535 -21.48937 -20.35032 -19.15204 -18.07057 -17.33938 -17.19318 -16.76279 -16.55475 -16.29338 -15.99085 -15.65302 -15.45073 -15.23371 -15.01088 -14.56988 -14.47439 -14.22764 -14.14115 -13.72233 -13.44554 -13.23781 -13.03120 -12.91850 -12.72850 -12.49955 -12.35749 -12.33651 -12.12704 -11.91892 -11.86277 -11.44827 -11.04008 -10.99886 -10.84429 -10.69463 -10.21852 -10.05788 -9.84546 -9.56551 -9.36444 -9.24874 -8.94030 -8.59043 -6.98008 -5.79786 -3.09659 0.67594 0.80593 2.20714 2.36728 3.12932 3.17850 3.41571 3.46782 3.48450 3.83937 4.14328 4.20065 4.26646 4.38664 4.43098 4.50826 4.65190 4.66292 4.77839 4.78529 4.81749 4.93980 5.05290 5.16158 5.18281 5.43631 5.50784 5.51891 5.55488 5.59415 5.60906 5.71797 5.72090 5.77781 5.88051 5.92835 6.12351 6.17405 6.25789 6.46488 6.61378 6.83059 7.27474 7.65388 7.84630 7.98942 8.38288 9.50087 10.05838 10.41525 11.42523 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026735 B = 0.001812 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.067511 B =15445.223484 C =15764.982877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.140 4.140 3 C 0.065 3.935 4 H 0.106 0.894 5 O -0.274 6.274 6 C 0.101 3.899 7 C -0.188 4.188 8 C -0.088 4.088 9 C -0.131 4.131 10 C -0.117 4.117 11 C 0.071 3.929 12 F -0.130 7.130 13 C 0.510 3.490 14 O -0.518 6.518 15 N -0.715 5.715 16 C 0.090 3.910 17 C 0.089 3.911 18 H 0.106 0.894 19 O -0.553 6.553 20 C 0.127 3.873 21 N -0.726 5.726 22 C -0.244 4.244 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.909 3.091 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.406 0.594 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.374 0.626 43 H 0.029 0.971 44 H 0.024 0.976 45 H 0.388 0.612 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.780 10.449 -13.588 30.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.177 4.177 3 C 0.005 3.995 4 H 0.124 0.876 5 O -0.186 6.186 6 C 0.054 3.946 7 C -0.206 4.206 8 C -0.107 4.107 9 C -0.149 4.149 10 C -0.136 4.136 11 C 0.051 3.949 12 F -0.108 7.108 13 C 0.294 3.706 14 O -0.392 6.392 15 N -0.369 5.369 16 C -0.034 4.034 17 C 0.030 3.970 18 H 0.124 0.876 19 O -0.358 6.358 20 C -0.002 4.002 21 N -0.370 5.370 22 C -0.375 4.375 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.578 5.578 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.241 0.759 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.221 0.779 43 H 0.047 0.953 44 H 0.041 0.959 45 H 0.223 0.777 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.202 10.180 -14.341 30.732 hybrid contribution 0.967 0.033 0.665 1.174 sum -24.235 10.213 -13.676 29.642 Atomic orbital electron populations 1.21942 0.94307 1.02916 1.02277 1.22016 0.97547 0.93550 1.04626 1.22467 0.93407 0.95643 0.88020 0.87630 1.86286 1.41672 1.57997 1.32609 1.19094 0.88732 0.92591 0.94147 1.21321 0.97742 1.03924 0.97635 1.21031 0.95873 0.94973 0.98774 1.20953 1.00554 1.00931 0.92460 1.21058 0.93677 0.98569 1.00255 1.17027 0.94197 1.01241 0.82476 1.91529 1.75771 1.95194 1.48341 1.20188 0.89118 0.78935 0.82382 1.90768 1.64848 1.44000 1.39616 1.45802 1.08288 1.60206 1.22606 1.22158 0.79277 1.02302 0.99667 1.22407 0.94931 0.96264 0.83445 0.87608 1.86572 1.71744 1.28070 1.49409 1.21199 0.90655 0.96118 0.92207 1.42230 1.05532 1.62458 1.26828 1.19219 0.83813 1.27665 1.06850 0.91179 1.24763 0.97626 1.00608 0.97854 1.69672 1.31481 1.39404 1.17269 0.86173 0.84667 0.77141 0.78079 1.21670 1.21710 1.20729 0.92133 0.92101 0.91517 0.89774 0.89255 0.83966 0.84887 0.84788 0.84020 0.75886 0.90153 0.90854 0.77925 0.95294 0.95867 0.77733 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 8.48 37.16 0.32 -0.64 16 2 C -0.14 -1.03 5.59 -26.73 -0.15 -1.18 16 3 C 0.06 0.61 2.54 -27.88 -0.07 0.54 16 4 H 0.11 0.75 5.43 -51.93 -0.28 0.46 16 5 O -0.27 -3.36 8.98 -39.53 -0.35 -3.72 16 6 C 0.10 1.04 5.66 -39.18 -0.22 0.82 16 7 C -0.19 -1.37 7.36 -39.45 -0.29 -1.66 16 8 C -0.09 -0.51 10.04 -39.59 -0.40 -0.91 16 9 C -0.13 -0.75 10.04 -39.57 -0.40 -1.15 16 10 C -0.12 -0.87 10.02 -39.54 -0.40 -1.27 16 11 C 0.07 0.75 7.31 -39.30 -0.29 0.46 16 12 F -0.13 -1.67 17.11 2.25 0.04 -1.63 16 13 C 0.51 6.40 7.23 -10.98 -0.08 6.32 16 14 O -0.52 -8.94 16.50 -14.35 -0.24 -9.18 16 15 N -0.71 -7.66 5.31 -60.30 -0.32 -7.98 16 16 C 0.09 1.12 5.34 -4.05 -0.02 1.10 16 17 C 0.09 1.29 3.09 -26.73 -0.08 1.21 16 18 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 19 O -0.55 -8.09 13.03 -35.23 -0.46 -8.54 16 20 C 0.13 2.39 5.90 -4.04 -0.02 2.36 16 21 N -0.73 -18.01 5.55 -59.91 -0.33 -18.35 16 22 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 26 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.06 0.28 6.73 -51.93 -0.35 -0.07 16 31 H 0.06 0.45 6.53 -51.93 -0.34 0.11 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.51 7.43 -51.93 -0.39 0.13 16 35 H 0.14 0.77 4.27 -52.49 -0.22 0.55 16 36 H 0.13 0.44 8.06 -52.49 -0.42 0.01 16 37 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 38 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.41 3.49 7.71 -40.82 -0.31 3.17 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.37 4.52 9.05 45.56 0.41 4.93 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.39 10.29 7.67 -40.82 -0.31 9.97 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -35.86 386.61 -8.06 -43.91 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -5.57 Total: 11.08 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.35 Total: -1.38 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.07 Total: -53.65 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -1.05 Total: -21.44 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.86 -8.06 -43.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667918915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.172 kcal (2) G-P(sol) polarization free energy of solvation -35.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds