Wall clock time and date at job start Sat Apr 11 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46666 * 2 1 4 4 N 1.46504 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.34770 * 120.00099 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99928 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00094 * 179.97438 * 5 4 3 8 8 S 1.80998 * 109.47032 * 180.02562 * 7 5 4 9 9 C 1.76205 * 100.00031 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99716 * 359.97438 * 9 8 7 11 11 C 1.38801 * 120.00334 * 180.02562 * 9 8 7 12 12 N 1.31632 * 119.99603 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00123 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47300 * 59.99960 * 13 11 9 15 15 H 1.48507 * 109.47193 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47294 * 299.99949 * 13 11 9 17 17 N 1.46497 * 109.47152 * 119.99682 * 2 1 3 18 18 C 1.34777 * 119.99984 * 294.93412 * 17 2 1 19 19 O 1.21284 * 120.00242 * 5.19331 * 18 17 2 20 20 C 1.50698 * 120.00165 * 185.20093 * 18 17 2 21 21 C 1.52999 * 109.47364 * 179.97438 * 20 18 17 22 22 C 1.52995 * 117.49983 * 243.74488 * 21 20 18 23 23 C 1.53008 * 117.49629 * 175.08422 * 21 20 18 24 24 C 1.52991 * 109.47356 * 239.99994 * 2 1 3 25 25 C 1.53006 * 117.51963 * 225.38598 * 24 2 1 26 26 C 1.53001 * 60.00094 * 107.48019 * 25 24 2 27 27 H 1.08998 * 109.47209 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47787 * 300.00387 * 1 2 3 29 29 H 1.09006 * 109.47456 * 60.00440 * 1 2 3 30 30 H 1.09003 * 109.46876 * 299.99420 * 3 2 1 31 31 H 1.08997 * 109.47444 * 59.99757 * 3 2 1 32 32 H 0.97000 * 119.99972 * 359.97438 * 4 3 2 33 33 H 1.09006 * 109.47363 * 299.99740 * 7 5 4 34 34 H 1.09001 * 109.47153 * 60.00239 * 7 5 4 35 35 H 0.97003 * 119.99606 * 180.02562 * 12 11 9 36 36 H 0.96992 * 120.00195 * 114.93422 * 17 2 1 37 37 H 1.09006 * 109.46659 * 300.00064 * 20 18 17 38 38 H 1.09000 * 109.47145 * 59.99592 * 20 18 17 39 39 H 1.08994 * 115.55018 * 29.41625 * 21 20 18 40 40 H 1.09001 * 117.49906 * 359.97438 * 22 21 20 41 41 H 1.08997 * 117.50227 * 145.02211 * 22 21 20 42 42 H 1.09004 * 117.49301 * 214.98226 * 23 21 20 43 43 H 1.08994 * 117.50063 * 359.97438 * 23 21 20 44 44 H 1.09000 * 115.55486 * 79.68439 * 24 2 1 45 45 H 1.08993 * 117.49847 * 214.97187 * 25 24 2 46 46 H 1.08998 * 117.49500 * 359.97438 * 25 24 2 47 47 H 1.08999 * 117.50164 * 252.51582 * 26 25 24 48 48 H 1.08997 * 117.49735 * 107.48982 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1787 2.6098 -0.0012 6 8 3.5723 3.6601 -0.0018 7 6 5.6857 2.6099 -0.0013 8 16 6.2889 4.3164 -0.0014 9 6 8.0270 4.0266 -0.0023 10 1 8.4057 3.0151 -0.0021 11 6 8.9093 5.0980 -0.0020 12 7 8.4476 6.3307 -0.0017 13 14 10.7518 4.7907 -0.0022 14 1 11.1249 4.0190 -1.2149 15 1 11.4704 6.0903 -0.0025 16 1 11.1249 4.0185 1.2101 17 7 2.0183 -0.6905 1.1962 18 6 1.7790 -0.1735 2.4176 19 8 1.0802 0.8110 2.5332 20 6 2.3798 -0.8186 3.6398 21 6 1.9559 -0.0411 4.8875 22 6 3.0556 0.6472 5.6985 23 6 2.3706 -0.6070 6.2473 24 6 2.0400 -0.7212 -1.2491 25 6 3.1742 -1.7321 -1.0683 26 6 1.7548 -2.2199 -1.3656 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.6765 1.9564 -0.8901 31 1 1.6765 1.9565 0.8899 32 1 3.9899 0.6026 -0.0006 33 1 6.0492 2.0966 0.8890 34 1 6.0490 2.0956 -0.8911 35 1 9.0643 7.0795 -0.0020 36 1 2.5138 -1.5198 1.1092 37 1 2.0298 -1.8481 3.7164 38 1 3.4667 -0.8095 3.5583 39 1 0.9895 0.4589 4.8240 40 1 4.0811 0.5458 5.3434 41 1 2.8126 1.5999 6.1689 42 1 1.6771 -0.4787 7.0784 43 1 2.9450 -1.5332 6.2530 44 1 2.0307 -0.1343 -2.1676 45 1 3.9109 -1.8102 -1.8676 46 1 3.5574 -1.8832 -0.0591 47 1 1.2041 -2.6921 -0.5520 48 1 1.5579 -2.6189 -2.3606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688801192.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:13 Heat of formation + Delta-G solvation = -24.460393 kcal Electronic energy + Delta-G solvation = -27819.686903 eV Core-core repulsion = 24002.583739 eV Total energy + Delta-G solvation = -3817.103164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.99502 -38.99515 -38.36073 -37.09376 -34.78663 -33.57658 -32.40727 -31.85524 -29.47151 -29.09778 -26.02443 -25.37666 -23.71711 -22.79636 -22.54957 -21.97693 -20.35711 -20.19457 -19.57220 -17.97636 -17.83520 -16.61495 -16.16830 -15.89973 -15.59306 -15.49911 -15.16375 -14.82118 -14.78658 -14.20572 -14.15137 -13.90778 -13.62254 -13.24816 -13.12983 -13.03616 -12.81651 -12.53858 -12.22932 -12.04401 -11.91985 -11.70275 -11.66756 -11.62381 -11.52408 -11.02855 -11.02362 -10.75935 -10.68334 -10.58841 -10.53533 -10.22804 -9.80762 -9.80108 -9.38585 -9.23562 -9.04176 -8.69386 -8.19848 -6.46662 -6.19232 -3.89479 2.46413 2.79038 3.10508 3.20745 3.24253 3.28730 3.33945 3.34063 3.61576 3.79594 4.08880 4.22577 4.32637 4.41822 4.44329 4.47178 4.67736 4.71688 4.89605 5.00092 5.09609 5.15508 5.15813 5.18767 5.23871 5.26628 5.35972 5.38697 5.45444 5.51080 5.57377 5.62721 5.65439 5.68463 5.76466 5.78265 5.92216 5.94012 6.03550 6.07690 6.10620 6.15949 6.32299 6.72736 7.24390 7.60816 7.81430 8.04655 8.36867 8.72615 9.25603 10.88137 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009920 B = 0.003025 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.879395 B = 9254.247292 C =10744.080675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.199 3.801 3 C 0.111 3.889 4 N -0.731 5.731 5 C 0.530 3.470 6 O -0.517 6.517 7 C -0.151 4.151 8 S -0.058 6.058 9 C -0.536 4.536 10 H 0.071 0.929 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 N -0.731 5.731 18 C 0.519 3.481 19 O -0.522 6.522 20 C -0.111 4.111 21 C -0.141 4.141 22 C -0.175 4.175 23 C -0.182 4.182 24 C -0.155 4.155 25 C -0.184 4.184 26 C -0.173 4.173 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.393 0.607 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.269 0.731 36 H 0.398 0.602 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.122 0.878 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.599 -23.327 3.450 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.113 3.887 3 C -0.013 4.013 4 N -0.386 5.386 5 C 0.315 3.685 6 O -0.391 6.391 7 C -0.302 4.302 8 S 0.168 5.832 9 C -0.685 4.685 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.744 3.256 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.200 1.200 17 N -0.388 5.388 18 C 0.306 3.694 19 O -0.397 6.397 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.212 4.212 23 C -0.219 4.219 24 C -0.174 4.174 25 C -0.221 4.221 26 C -0.210 4.210 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.227 0.773 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.236 0.764 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.136 0.864 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.140 0.860 45 H 0.122 0.878 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.079 -20.630 3.537 26.394 hybrid contribution 2.501 -2.294 -0.146 3.397 sum -13.577 -22.924 3.391 26.858 Atomic orbital electron populations 1.22093 0.92857 1.02533 1.03913 1.20034 0.94696 0.91197 0.82812 1.21734 0.80741 0.94739 1.04130 1.45850 1.06372 1.08553 1.77785 1.20261 0.89480 0.83303 0.75427 1.90706 1.69908 1.31003 1.47447 1.23511 0.93725 1.08393 1.04592 1.85429 1.03763 0.97286 1.96681 1.22833 0.91208 0.95407 1.59021 0.91070 1.24985 0.99557 0.94429 0.94578 1.70014 1.35417 0.98052 1.46780 0.86237 0.82899 0.77672 0.78754 1.19970 1.20804 1.19963 1.46375 1.59066 1.27812 1.05525 1.20551 0.80337 0.84224 0.84270 1.90672 1.37205 1.25750 1.86119 1.21240 1.02010 1.00073 0.91809 1.22014 1.00893 1.03004 0.90016 1.23064 0.97546 0.96808 1.03777 1.23004 1.04104 0.98014 0.96777 1.22588 1.03520 0.92085 0.99198 1.23065 0.92283 1.03743 1.03048 1.22987 0.98534 0.96062 1.03392 0.92155 0.90164 0.91369 0.91072 0.88831 0.77302 0.89569 0.89449 0.92143 0.76441 0.88768 0.88699 0.86421 0.88648 0.88564 0.88770 0.88908 0.86049 0.87848 0.88689 0.88636 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 8.37 37.15 0.31 -1.07 16 2 C 0.20 1.79 0.52 -131.82 -0.07 1.72 16 3 C 0.11 1.48 4.30 -4.04 -0.02 1.46 16 4 N -0.73 -10.38 5.18 -60.29 -0.31 -10.69 16 5 C 0.53 10.41 7.85 -10.99 -0.09 10.33 16 6 O -0.52 -12.44 15.86 5.56 0.09 -12.35 16 7 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 8 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 9 C -0.54 -15.44 9.50 30.94 0.29 -15.15 16 10 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 11 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 12 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 13 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 N -0.73 -5.72 4.49 -47.61 -0.21 -5.93 16 18 C 0.52 5.33 7.24 -10.99 -0.08 5.25 16 19 O -0.52 -7.43 11.81 5.55 0.07 -7.37 16 20 C -0.11 -0.87 5.98 -27.88 -0.17 -1.04 16 21 C -0.14 -1.34 5.41 -90.62 -0.49 -1.83 16 22 C -0.17 -1.72 10.18 -26.69 -0.27 -1.99 16 23 C -0.18 -1.43 10.26 -26.69 -0.27 -1.70 16 24 C -0.16 -1.11 4.48 -90.62 -0.41 -1.51 16 25 C -0.18 -1.04 8.98 -26.73 -0.24 -1.28 16 26 C -0.17 -0.91 9.53 -26.73 -0.25 -1.17 16 27 H 0.06 0.45 7.72 -51.93 -0.40 0.05 16 28 H 0.08 0.89 6.37 -51.93 -0.33 0.56 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.55 5.99 -51.93 -0.31 1.24 16 32 H 0.39 4.48 7.23 -40.82 -0.30 4.18 16 33 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 34 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 35 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.40 2.11 5.64 -40.82 -0.23 1.88 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.67 7.87 -51.93 -0.41 0.26 16 39 H 0.12 1.32 7.31 -51.93 -0.38 0.95 16 40 H 0.10 0.93 8.03 -51.93 -0.42 0.51 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.44 5.96 -51.93 -0.31 0.13 16 47 H 0.10 0.46 7.99 -51.93 -0.42 0.05 16 48 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 402.04 15.07 6.06 6.06 Total: -1.00 -36.28 402.04 -10.13 -46.41 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.69 Total: 5.80 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -1.62 Total: -8.87 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.21 Total: -42.34 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.15 Total: -19.72 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.28 -10.13 -46.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688801192.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.953 kcal (2) G-P(sol) polarization free energy of solvation -36.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds