Wall clock time and date at job start Sat Apr 11 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 N 1.46901 * 109.47213 * 124.99711 * 3 2 1 5 5 C 1.47016 * 110.99685 * 46.38274 * 4 3 2 6 6 C 1.53099 * 109.25267 * 182.42153 * 5 4 3 7 7 O 1.43016 * 109.25978 * 303.13035 * 6 5 4 8 8 C 1.42967 * 113.77116 * 58.59896 * 7 6 5 9 9 C 1.53000 * 109.49049 * 61.36610 * 8 7 6 10 10 C 1.53194 * 109.34274 * 58.88368 * 9 8 7 11 11 N 1.46939 * 108.77519 * 54.58739 * 10 9 8 12 12 C 1.34773 * 120.64025 * 126.31266 * 11 10 9 13 13 O 1.21277 * 120.00040 * 180.02562 * 12 11 10 14 14 C 1.50699 * 119.99983 * 0.03199 * 12 11 10 15 15 S 1.81002 * 109.47039 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00172 * 179.97438 * 15 14 12 17 17 H 1.08007 * 119.99665 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00135 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99960 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99571 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47174 * 90.00184 * 20 18 16 22 22 H 1.48507 * 109.46626 * 209.99592 * 20 18 16 23 23 H 1.48499 * 109.47432 * 329.99466 * 20 18 16 24 24 C 1.46932 * 118.71606 * 306.34165 * 11 10 9 25 25 C 1.52999 * 109.48928 * 181.56382 * 8 7 6 26 26 C 1.47008 * 110.99822 * 170.00106 * 4 3 2 27 27 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 29 29 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47600 * 245.00508 * 3 2 1 31 31 H 1.09004 * 109.46937 * 5.00335 * 3 2 1 32 32 H 1.09000 * 109.50535 * 302.35333 * 5 4 3 33 33 H 1.09004 * 109.50978 * 62.48605 * 5 4 3 34 34 H 1.08999 * 109.50760 * 183.19069 * 6 5 4 35 35 H 1.09005 * 109.50453 * 63.05807 * 6 5 4 36 36 H 1.09002 * 109.48779 * 178.83861 * 9 8 7 37 37 H 1.08993 * 109.49881 * 298.91872 * 9 8 7 38 38 H 1.08999 * 109.58488 * 294.80284 * 10 9 8 39 39 H 1.08999 * 109.70478 * 174.44175 * 10 9 8 40 40 H 1.09005 * 109.46891 * 299.99096 * 14 12 11 41 41 H 1.08999 * 109.47319 * 59.99061 * 14 12 11 42 42 H 0.97000 * 119.99891 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.58616 * 293.86915 * 24 11 10 44 44 H 1.08997 * 109.70011 * 173.51571 * 24 11 10 45 45 H 1.09002 * 109.49408 * 61.07681 * 25 8 7 46 46 H 1.09000 * 109.49053 * 181.12813 * 25 8 7 47 47 H 1.08995 * 109.51106 * 297.59515 * 26 4 3 48 48 H 1.09003 * 109.50623 * 57.67709 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1346 5 6 3.7461 0.0710 1.2301 6 6 4.6596 0.1186 2.4577 7 8 5.5223 1.2551 2.3599 8 6 4.8265 2.5003 2.2639 9 6 3.9828 2.7120 3.5226 10 6 4.8957 2.7028 4.7528 11 7 5.9566 3.7013 4.5619 12 6 6.1785 4.6538 5.4892 13 8 7.0570 5.4724 5.3196 14 6 5.3349 4.7014 6.7371 15 16 5.8735 6.0814 7.7771 16 6 4.7513 5.9057 9.1241 17 1 4.0195 5.1114 9.1171 18 6 4.8079 6.7879 10.1942 19 7 5.7002 7.7555 10.2030 20 14 3.6176 6.6018 11.6219 21 1 4.2117 5.7081 12.6483 22 1 3.3507 7.9344 12.2205 23 1 2.3445 6.0153 11.1317 24 6 6.7706 3.6417 3.3401 25 6 5.8372 3.6405 2.1254 26 6 3.9132 2.4768 1.0357 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9354 -0.0045 29 1 1.8500 -0.9353 -0.0004 30 1 2.6212 1.4027 -0.9314 31 1 1.3585 2.1317 0.0896 32 1 3.0484 -0.7608 1.3275 33 1 4.3496 -0.0626 0.3322 34 1 5.2590 -0.7907 2.5009 35 1 4.0530 0.1988 3.3598 36 1 3.4684 3.6708 3.4586 37 1 3.2493 1.9103 3.6080 38 1 5.3406 1.7148 4.8703 39 1 4.3164 2.9508 5.6422 40 1 4.2888 4.8390 6.4635 41 1 5.4467 3.7670 7.2872 42 1 5.7394 8.3723 10.9506 43 1 7.3677 2.7298 3.3430 44 1 7.4288 4.5093 3.2943 45 1 6.4228 3.4991 1.2169 46 1 5.3075 4.5916 2.0723 47 1 4.5183 2.3817 0.1341 48 1 3.3376 3.4014 0.9917 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700331179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:18 Heat of formation + Delta-G solvation = -43.296020 kcal Electronic energy + Delta-G solvation = -28034.910169 eV Core-core repulsion = 24216.990230 eV Total energy + Delta-G solvation = -3817.919938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96409 -39.21596 -37.27556 -35.83224 -33.67061 -32.97172 -32.40088 -31.34727 -29.87464 -28.83517 -27.44001 -25.46983 -24.55997 -24.14622 -23.45647 -21.79079 -20.19784 -19.69290 -18.99276 -17.70224 -17.03625 -16.54879 -16.13721 -15.90201 -15.62315 -15.28827 -15.21154 -15.14893 -14.78268 -14.75200 -14.24109 -13.94096 -13.67350 -13.61626 -13.23570 -12.89272 -12.69186 -12.56759 -12.50103 -12.28451 -12.14161 -12.04569 -11.73598 -11.33012 -11.31238 -11.19750 -11.04064 -11.00167 -10.97488 -10.73092 -10.40969 -9.99637 -9.81338 -9.75949 -9.26661 -9.03957 -8.71966 -8.40229 -8.18349 -6.46507 -6.18791 -3.88935 1.76975 3.01228 3.12915 3.24232 3.28581 3.32538 3.41426 3.49665 3.67095 4.23056 4.25002 4.42896 4.50247 4.57526 4.59101 4.68916 4.81411 4.88194 4.95337 5.04268 5.09318 5.15898 5.16511 5.20971 5.27052 5.29889 5.30550 5.39550 5.42742 5.46730 5.57927 5.59748 5.64601 5.73895 5.83013 5.91186 5.95475 6.03624 6.11401 6.14581 6.17237 6.26636 6.51410 6.53018 6.74841 6.96547 7.62101 7.67308 8.38036 8.64709 9.26431 10.88634 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016258 B = 0.002430 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.834668 B =11519.334027 C =12614.859020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.160 4.160 3 C 0.081 3.919 4 N -0.529 5.529 5 C 0.014 3.986 6 C 0.059 3.941 7 O -0.369 6.369 8 C 0.126 3.874 9 C -0.150 4.150 10 C 0.113 3.887 11 N -0.618 5.618 12 C 0.535 3.465 13 O -0.520 6.520 14 C -0.150 4.150 15 S -0.062 6.062 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.120 3.880 25 C -0.119 4.119 26 C 0.031 3.969 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.268 0.732 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.043 0.957 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.545 -18.127 -22.727 30.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.178 4.178 3 C -0.046 4.046 4 N -0.253 5.253 5 C -0.114 4.114 6 C -0.018 4.018 7 O -0.288 6.288 8 C 0.086 3.914 9 C -0.189 4.189 10 C -0.010 4.010 11 N -0.354 5.354 12 C 0.323 3.677 13 O -0.394 6.394 14 C -0.300 4.300 15 S 0.165 5.835 16 C -0.682 4.682 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.003 4.003 25 C -0.157 4.157 26 C -0.097 4.097 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.062 0.938 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.225 -16.694 -22.445 28.657 hybrid contribution -1.784 -1.333 0.249 2.241 sum -8.009 -18.026 -22.196 29.695 Atomic orbital electron populations 1.23872 0.95786 1.02115 0.99619 1.22887 0.96118 0.97909 1.00887 1.21290 0.95094 0.96478 0.91759 1.62347 1.18153 1.02676 1.42158 1.22888 0.96647 0.93116 0.98739 1.22678 0.92874 0.89324 0.96894 1.88039 1.32809 1.13713 1.94204 1.21439 0.91506 0.84966 0.93482 1.22390 0.98357 1.03882 0.94239 1.21630 0.88895 0.92303 0.98210 1.48083 1.35692 1.31007 1.20595 1.20308 0.83903 0.79675 0.83831 1.90681 1.32681 1.38632 1.77438 1.23547 1.02078 1.06888 0.97513 1.85394 1.47464 1.32956 1.17716 1.22861 1.20787 1.18481 1.06078 0.90979 1.24991 0.96090 0.94501 0.98036 1.70021 1.33324 1.15610 1.31349 0.86176 0.80496 0.77670 0.81197 1.20289 1.20782 1.19694 1.21374 0.93146 1.03268 0.82514 1.21914 0.97680 0.96774 0.99354 1.22795 0.94528 0.94734 0.97648 0.88343 0.88283 0.87216 0.93895 0.89946 0.89293 0.94083 0.88528 0.91844 0.90479 0.89258 0.91366 0.89337 0.89346 0.89357 0.92223 0.91156 0.88905 0.90267 0.89914 0.93833 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 14.32 29.02 0.42 -0.58 16 2 C -0.16 -0.97 8.58 -36.02 -0.31 -1.28 16 3 C 0.08 0.54 5.72 -4.97 -0.03 0.51 16 4 N -0.53 -4.11 4.22 -235.76 -1.00 -5.10 16 5 C 0.01 0.10 5.10 -3.71 -0.02 0.08 16 6 C 0.06 0.46 6.61 37.21 0.25 0.70 16 7 O -0.37 -3.70 9.03 -35.23 -0.32 -4.02 16 8 C 0.13 1.20 0.68 -90.58 -0.06 1.14 16 9 C -0.15 -1.52 4.41 -26.63 -0.12 -1.64 16 10 C 0.11 1.36 6.11 -3.70 -0.02 1.34 16 11 N -0.62 -9.24 2.97 -172.76 -0.51 -9.76 16 12 C 0.53 10.51 7.72 -10.99 -0.08 10.43 16 13 O -0.52 -12.16 15.28 5.56 0.08 -12.08 16 14 C -0.15 -3.12 4.50 36.01 0.16 -2.96 16 15 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 16 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 17 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 20 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 24 C 0.12 1.56 6.19 -3.71 -0.02 1.54 16 25 C -0.12 -1.21 5.11 -26.63 -0.14 -1.35 16 26 C 0.03 0.26 4.31 -3.72 -0.02 0.24 16 27 H 0.10 0.52 7.84 -52.49 -0.41 0.11 16 28 H 0.10 0.46 8.06 -52.48 -0.42 0.04 16 29 H 0.11 0.59 6.55 -52.49 -0.34 0.25 16 30 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.08 0.54 7.79 -51.93 -0.40 0.14 16 32 H 0.09 0.53 6.02 -51.93 -0.31 0.21 16 33 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.50 6.52 -51.93 -0.34 0.16 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.86 6.16 -51.93 -0.32 0.54 16 38 H 0.07 0.78 7.82 -51.93 -0.41 0.37 16 39 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 40 H 0.09 1.71 7.70 -51.91 -0.40 1.31 16 41 H 0.09 1.72 7.94 -51.92 -0.41 1.31 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.07 0.89 7.82 -51.93 -0.41 0.48 16 44 H 0.09 1.36 7.01 -51.93 -0.36 0.99 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -34.21 384.89 -10.01 -44.23 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.77 Total: -1.17 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 0.20 Total: -4.86 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.77 Total: -40.49 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.23 Total: -16.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.21 -10.01 -44.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700331179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.932 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds