Wall clock time and date at job start Sat Apr 11 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 N 1.46901 * 109.47213 * 124.99711 * 3 2 1 5 5 C 1.47016 * 110.99685 * 46.38274 * 4 3 2 6 6 C 1.53099 * 109.25267 * 182.42153 * 5 4 3 7 7 O 1.43016 * 109.25978 * 303.13035 * 6 5 4 8 8 C 1.42967 * 113.77116 * 58.59896 * 7 6 5 9 9 C 1.53000 * 109.49049 * 61.36610 * 8 7 6 10 10 C 1.53194 * 109.34274 * 58.88368 * 9 8 7 11 11 N 1.46939 * 108.77519 * 54.58739 * 10 9 8 12 12 C 1.34773 * 120.64025 * 126.31266 * 11 10 9 13 13 O 1.21277 * 120.00040 * 180.02562 * 12 11 10 14 14 C 1.50699 * 119.99983 * 0.03199 * 12 11 10 15 15 S 1.81002 * 109.47039 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00172 * 179.97438 * 15 14 12 17 17 H 1.08007 * 119.99665 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00135 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99960 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99571 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47174 * 90.00184 * 20 18 16 22 22 H 1.48507 * 109.46626 * 209.99592 * 20 18 16 23 23 H 1.48499 * 109.47432 * 329.99466 * 20 18 16 24 24 C 1.46932 * 118.71606 * 306.34165 * 11 10 9 25 25 C 1.52999 * 109.48928 * 181.56382 * 8 7 6 26 26 C 1.47008 * 110.99822 * 170.00106 * 4 3 2 27 27 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 29 29 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47600 * 245.00508 * 3 2 1 31 31 H 1.09004 * 109.46937 * 5.00335 * 3 2 1 32 32 H 1.09000 * 109.50535 * 302.35333 * 5 4 3 33 33 H 1.09004 * 109.50978 * 62.48605 * 5 4 3 34 34 H 1.08999 * 109.50760 * 183.19069 * 6 5 4 35 35 H 1.09005 * 109.50453 * 63.05807 * 6 5 4 36 36 H 1.09002 * 109.48779 * 178.83861 * 9 8 7 37 37 H 1.08993 * 109.49881 * 298.91872 * 9 8 7 38 38 H 1.08999 * 109.58488 * 294.80284 * 10 9 8 39 39 H 1.08999 * 109.70478 * 174.44175 * 10 9 8 40 40 H 1.09005 * 109.46891 * 299.99096 * 14 12 11 41 41 H 1.08999 * 109.47319 * 59.99061 * 14 12 11 42 42 H 0.97000 * 119.99891 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.58616 * 293.86915 * 24 11 10 44 44 H 1.08997 * 109.70011 * 173.51571 * 24 11 10 45 45 H 1.09002 * 109.49408 * 61.07681 * 25 8 7 46 46 H 1.09000 * 109.49053 * 181.12813 * 25 8 7 47 47 H 1.08995 * 109.51106 * 297.59515 * 26 4 3 48 48 H 1.09003 * 109.50623 * 57.67709 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1346 5 6 3.7461 0.0710 1.2301 6 6 4.6596 0.1186 2.4577 7 8 5.5223 1.2551 2.3599 8 6 4.8265 2.5003 2.2639 9 6 3.9828 2.7120 3.5226 10 6 4.8957 2.7028 4.7528 11 7 5.9566 3.7013 4.5619 12 6 6.1785 4.6538 5.4892 13 8 7.0570 5.4724 5.3196 14 6 5.3349 4.7014 6.7371 15 16 5.8735 6.0814 7.7771 16 6 4.7513 5.9057 9.1241 17 1 4.0195 5.1114 9.1171 18 6 4.8079 6.7879 10.1942 19 7 5.7002 7.7555 10.2030 20 14 3.6176 6.6018 11.6219 21 1 4.2117 5.7081 12.6483 22 1 3.3507 7.9344 12.2205 23 1 2.3445 6.0153 11.1317 24 6 6.7706 3.6417 3.3401 25 6 5.8372 3.6405 2.1254 26 6 3.9132 2.4768 1.0357 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9354 -0.0045 29 1 1.8500 -0.9353 -0.0004 30 1 2.6212 1.4027 -0.9314 31 1 1.3585 2.1317 0.0896 32 1 3.0484 -0.7608 1.3275 33 1 4.3496 -0.0626 0.3322 34 1 5.2590 -0.7907 2.5009 35 1 4.0530 0.1988 3.3598 36 1 3.4684 3.6708 3.4586 37 1 3.2493 1.9103 3.6080 38 1 5.3406 1.7148 4.8703 39 1 4.3164 2.9508 5.6422 40 1 4.2888 4.8390 6.4635 41 1 5.4467 3.7670 7.2872 42 1 5.7394 8.3723 10.9506 43 1 7.3677 2.7298 3.3430 44 1 7.4288 4.5093 3.2943 45 1 6.4228 3.4991 1.2169 46 1 5.3075 4.5916 2.0723 47 1 4.5183 2.3817 0.1341 48 1 3.3376 3.4014 0.9917 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700331179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:17 Heat of formation + Delta-G solvation = -65.954814 kcal Electronic energy + Delta-G solvation = -28035.892728 eV Core-core repulsion = 24216.990230 eV Total energy + Delta-G solvation = -3818.902498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.81788 -40.46766 -38.11323 -36.81060 -34.57884 -34.30530 -33.84437 -32.34888 -30.98340 -29.88613 -28.26287 -27.63518 -25.22058 -24.94947 -24.40663 -22.67101 -21.05620 -20.36971 -20.10374 -19.51376 -18.24824 -17.44591 -16.99689 -16.95940 -16.86395 -16.47790 -16.40590 -16.01873 -15.92213 -15.79508 -15.40715 -14.89624 -14.85775 -14.61851 -14.44782 -14.13539 -13.75219 -13.59664 -13.54846 -13.17880 -13.14207 -13.07450 -12.88315 -12.77632 -12.60422 -12.58416 -12.20482 -12.03724 -11.89371 -11.72069 -11.69444 -11.16431 -11.13447 -10.85859 -10.52085 -10.44007 -10.25131 -9.65488 -9.28341 -8.66696 -8.33699 -6.12128 1.26258 1.33962 1.43328 1.46559 1.57357 1.58064 2.11508 2.28216 2.74937 2.91422 3.00314 3.25593 3.59277 3.64824 3.71849 3.85670 3.96122 4.01390 4.07958 4.21012 4.21689 4.25106 4.31523 4.35025 4.42802 4.45784 4.51689 4.53730 4.61829 4.62745 4.72328 4.80223 4.83035 4.84326 4.91094 4.95707 4.98770 5.02870 5.17758 5.25045 5.42447 5.58068 5.69658 5.83126 5.96116 5.98179 6.20627 6.27996 6.31532 7.07310 7.14955 8.75588 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016258 B = 0.002430 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.834668 B =11519.334027 C =12614.859020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.168 4.168 3 C 0.081 3.919 4 N -0.536 5.536 5 C 0.018 3.982 6 C 0.055 3.945 7 O -0.383 6.383 8 C 0.129 3.871 9 C -0.142 4.142 10 C 0.108 3.892 11 N -0.603 5.603 12 C 0.533 3.467 13 O -0.567 6.567 14 C -0.123 4.123 15 S -0.151 6.151 16 C -0.545 4.545 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.257 1.257 24 C 0.118 3.882 25 C -0.112 4.112 26 C 0.036 3.964 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.039 0.961 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.271 0.729 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.044 0.956 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.698 -20.538 -23.342 32.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.186 4.186 3 C -0.045 4.045 4 N -0.260 5.260 5 C -0.110 4.110 6 C -0.022 4.022 7 O -0.303 6.303 8 C 0.089 3.911 9 C -0.180 4.180 10 C -0.014 4.014 11 N -0.337 5.337 12 C 0.321 3.679 13 O -0.446 6.446 14 C -0.274 4.274 15 S 0.076 5.924 16 C -0.692 4.692 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.181 1.181 24 C -0.004 4.004 25 C -0.151 4.151 26 C -0.092 4.092 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.135 0.865 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.057 0.943 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.114 0.886 46 H 0.099 0.901 47 H 0.063 0.937 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.402 -19.159 -23.102 31.167 hybrid contribution -1.108 -0.705 0.314 1.350 sum -9.510 -19.864 -22.788 31.691 Atomic orbital electron populations 1.24018 0.95814 1.02683 0.98913 1.22932 0.96294 0.97858 1.01507 1.21291 0.94904 0.96918 0.91417 1.62355 1.18163 1.02762 1.42754 1.22882 0.96694 0.93184 0.98256 1.22852 0.93063 0.89058 0.97189 1.88020 1.33719 1.14215 1.94311 1.21352 0.91229 0.84733 0.93756 1.22320 0.98081 1.04054 0.93535 1.21875 0.88410 0.91803 0.99345 1.48086 1.35873 1.29857 1.19933 1.20116 0.83316 0.80276 0.84218 1.90665 1.34664 1.40859 1.78419 1.23360 1.02924 1.04120 0.96961 1.85581 1.49177 1.37548 1.20113 1.23185 1.20835 1.18940 1.06270 0.89937 1.26144 0.97999 0.93843 1.01224 1.70188 1.35386 1.16703 1.32515 0.84943 0.78119 0.77914 0.76933 1.19308 1.20294 1.18098 1.21497 0.93521 1.02677 0.82713 1.21860 0.97517 0.97291 0.98400 1.22692 0.94442 0.95262 0.96819 0.88295 0.87305 0.86497 0.93823 0.90055 0.88034 0.94309 0.87064 0.91855 0.90972 0.88109 0.90071 0.89362 0.87536 0.87693 0.92002 0.90357 0.90924 0.88578 0.90082 0.93743 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 14.32 67.79 0.97 -0.65 16 2 C -0.17 -1.67 8.58 25.65 0.22 -1.45 16 3 C 0.08 0.93 5.72 85.56 0.49 1.42 16 4 N -0.54 -7.04 4.22 -899.82 -3.80 -10.84 16 5 C 0.02 0.20 5.10 86.31 0.44 0.64 16 6 C 0.05 0.70 6.61 72.02 0.48 1.18 16 7 O -0.38 -6.77 9.03 -148.98 -1.35 -8.12 16 8 C 0.13 2.19 0.68 -10.77 -0.01 2.18 16 9 C -0.14 -2.56 4.41 30.66 0.14 -2.43 16 10 C 0.11 2.38 6.11 86.36 0.53 2.91 16 11 N -0.60 -17.59 2.97 -818.88 -2.43 -20.03 16 12 C 0.53 21.12 7.72 87.66 0.68 21.80 16 13 O -0.57 -27.53 15.28 -3.02 -0.05 -27.58 16 14 C -0.12 -5.09 4.50 71.24 0.32 -4.77 16 15 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 16 C -0.54 -31.43 9.50 67.95 0.65 -30.79 16 17 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 18 C 0.01 0.72 5.49 84.86 0.47 1.19 16 19 N -0.91 -56.51 13.22 21.65 0.29 -56.23 16 20 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 C 0.12 3.01 6.19 86.36 0.53 3.54 16 25 C -0.11 -2.13 5.11 30.66 0.16 -1.97 16 26 C 0.04 0.52 4.31 86.31 0.37 0.89 16 27 H 0.10 0.88 7.84 -2.91 -0.02 0.86 16 28 H 0.11 0.77 8.06 -2.91 -0.02 0.75 16 29 H 0.12 0.97 6.55 -2.91 -0.02 0.95 16 30 H 0.04 0.49 8.08 -2.39 -0.02 0.47 16 31 H 0.08 0.93 7.79 -2.38 -0.02 0.91 16 32 H 0.10 0.91 6.02 -2.39 -0.01 0.89 16 33 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 0.81 6.52 -2.38 -0.02 0.80 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.65 6.16 -2.39 -0.01 1.63 16 38 H 0.08 1.64 7.82 -2.39 -0.02 1.63 16 39 H 0.09 1.97 5.93 -2.39 -0.01 1.95 16 40 H 0.11 4.02 7.70 -2.39 -0.02 4.00 16 41 H 0.10 3.99 7.94 -2.40 -0.02 3.97 16 42 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.08 1.89 7.82 -2.39 -0.02 1.87 16 44 H 0.07 2.17 7.01 -2.39 -0.02 2.16 16 45 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 47 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -75.63 384.89 0.89 -74.74 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.94 Total: 18.26 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 6.43 Total: -6.32 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -5.95 Total: -87.09 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -1.39 Total: -35.69 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -75.63 0.89 -74.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700331179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.784 kcal (2) G-P(sol) polarization free energy of solvation -75.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds