Wall clock time and date at job start Sat Apr 11 2020 06:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47127 * 2 1 4 4 H 1.08998 * 109.47237 * 304.99806 * 3 2 1 5 5 C 1.53002 * 109.47016 * 184.99824 * 3 2 1 6 6 N 1.46503 * 109.47049 * 184.99932 * 5 3 2 7 7 C 1.34771 * 120.00201 * 180.02562 * 6 5 3 8 8 O 1.21287 * 120.00023 * 359.71988 * 7 6 5 9 9 C 1.50699 * 120.00457 * 180.02562 * 7 6 5 10 10 S 1.80992 * 109.47533 * 179.97438 * 9 7 6 11 11 C 1.76197 * 100.00194 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00267 * 359.97438 * 11 10 9 13 13 C 1.38804 * 120.00345 * 180.02562 * 11 10 9 14 14 N 1.31633 * 119.99637 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00129 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47330 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46969 * 119.99982 * 15 13 11 18 18 H 1.48504 * 109.46858 * 239.99754 * 15 13 11 19 19 N 1.46501 * 109.46956 * 64.99967 * 3 2 1 20 20 C 1.34768 * 119.99825 * 274.99982 * 19 3 2 21 21 O 1.21611 * 120.00371 * 0.02562 * 20 19 3 22 22 C 1.47109 * 119.99754 * 180.02562 * 20 19 3 23 23 C 1.32992 * 120.00014 * 174.04247 * 22 20 19 24 24 C 1.50699 * 120.00115 * 172.95330 * 23 22 20 25 25 C 1.50701 * 119.99823 * 352.94618 * 23 22 20 26 26 C 1.53007 * 117.49674 * 181.68894 * 25 23 22 27 27 C 1.52999 * 117.49717 * 113.03260 * 25 23 22 28 28 H 1.09007 * 109.47329 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47049 * 299.99473 * 1 2 3 30 30 H 1.09004 * 109.47558 * 60.00033 * 1 2 3 31 31 H 1.09002 * 109.47190 * 239.99767 * 2 1 3 32 32 H 1.09004 * 109.47558 * 119.99967 * 2 1 3 33 33 H 1.09007 * 109.47012 * 65.00259 * 5 3 2 34 34 H 1.08999 * 109.47533 * 304.99856 * 5 3 2 35 35 H 0.97000 * 119.99745 * 359.97438 * 6 5 3 36 36 H 1.09003 * 109.47081 * 300.00345 * 9 7 6 37 37 H 1.09007 * 109.46834 * 59.99775 * 9 7 6 38 38 H 0.96993 * 119.99948 * 180.02562 * 14 13 11 39 39 H 0.97007 * 119.99446 * 95.00224 * 19 3 2 40 40 H 1.07998 * 119.99811 * 354.02647 * 22 20 19 41 41 H 1.09008 * 109.46988 * 89.99277 * 24 23 22 42 42 H 1.09000 * 109.47247 * 209.99071 * 24 23 22 43 43 H 1.08997 * 109.47266 * 329.99945 * 24 23 22 44 44 H 1.09003 * 115.55195 * 327.36151 * 25 23 22 45 45 H 1.08996 * 117.49933 * 0.02562 * 26 25 23 46 46 H 1.09006 * 117.49404 * 145.02073 * 26 25 23 47 47 H 1.08997 * 117.50120 * 214.98123 * 27 25 23 48 48 H 1.09001 * 117.49760 * 359.97401 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0059 7 6 5.3856 3.0631 -0.0868 8 8 6.1638 2.1479 -0.2536 9 6 5.8982 4.4748 0.0370 10 16 7.7020 4.4770 -0.1118 11 6 8.0215 6.2007 0.0654 12 1 7.2028 6.8892 0.2140 13 6 9.3254 6.6739 0.0130 14 7 10.3232 5.8347 -0.1686 15 14 9.6640 8.5013 0.2001 16 1 8.3817 9.2254 0.3911 17 1 10.5393 8.7243 1.3788 18 1 10.3403 9.0070 -1.0214 19 7 1.6523 2.0975 1.2518 20 6 0.4351 2.6643 1.3669 21 8 -0.3418 2.6318 0.4318 22 6 0.0461 3.3225 2.6237 23 6 -1.1052 3.9838 2.6994 24 6 -1.5795 4.5219 4.0248 25 6 -1.9355 4.1954 1.4597 26 6 -3.2301 4.9980 1.6049 27 6 -3.2881 3.4842 1.3855 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8498 1.0377 -1.0961 34 1 3.9954 0.8311 0.6659 35 1 3.4409 3.5484 0.1308 36 1 5.4672 5.0885 -0.7541 37 1 5.6135 4.8809 1.0077 38 1 11.2343 6.1653 -0.2049 39 1 2.2719 2.1231 1.9978 40 1 0.6954 3.2683 3.4851 41 1 -1.1987 5.5338 4.1633 42 1 -2.6692 4.5382 4.0414 43 1 -1.2133 3.8829 4.8283 44 1 -1.3747 4.3083 0.5318 45 1 -3.4809 5.3733 2.5970 46 1 -3.5210 5.6387 0.7724 47 1 -3.6174 3.1295 0.4089 48 1 -3.5772 2.8629 2.2332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704624696.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:21 Heat of formation + Delta-G solvation = -64.957206 kcal Electronic energy + Delta-G solvation = -26778.581852 eV Core-core repulsion = 22959.722614 eV Total energy + Delta-G solvation = -3818.859238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30280 -40.48863 -38.89688 -37.35424 -34.96506 -34.58155 -34.36901 -33.20328 -31.46179 -29.37796 -28.51716 -27.63942 -24.75362 -24.15795 -23.20929 -22.47207 -21.69764 -21.44965 -19.94372 -19.45631 -18.16957 -17.83439 -17.56843 -17.01394 -16.87787 -16.72230 -16.45551 -15.95669 -15.70990 -15.54289 -14.85487 -14.62890 -14.51084 -14.41198 -14.25413 -14.05410 -13.87705 -13.77906 -13.46835 -13.16075 -13.13460 -13.01179 -12.90553 -12.63269 -12.53105 -12.38589 -12.18991 -12.12470 -11.76498 -11.70609 -11.66475 -11.26536 -11.15927 -10.99032 -10.48084 -10.27600 -10.17511 -9.98369 -9.70393 -8.66408 -8.35027 -6.12646 0.41360 1.26696 1.41331 1.46802 1.58025 1.59621 2.16392 2.27090 2.34334 2.37862 2.99270 3.08908 3.31638 3.55709 3.65121 3.88176 3.92057 4.03757 4.07281 4.12116 4.17969 4.28160 4.28585 4.39439 4.46406 4.50519 4.56283 4.67066 4.68126 4.75250 4.81659 4.82398 4.94446 4.97997 5.08260 5.10060 5.18695 5.25739 5.28355 5.36612 5.42230 5.46840 5.48656 5.60053 5.66381 6.19987 6.43030 6.65724 7.06644 7.20022 7.37979 8.74371 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012033 B = 0.002268 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.414488 B =12341.823134 C =14169.366052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.149 3.851 4 H 0.084 0.916 5 C 0.116 3.884 6 N -0.712 5.712 7 C 0.536 3.464 8 O -0.562 6.562 9 C -0.131 4.131 10 S -0.148 6.148 11 C -0.545 4.545 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.257 1.257 17 H -0.273 1.273 18 H -0.275 1.275 19 N -0.717 5.717 20 C 0.544 3.456 21 O -0.557 6.557 22 C -0.242 4.242 23 C 0.000 4.000 24 C -0.129 4.129 25 C -0.134 4.134 26 C -0.177 4.177 27 C -0.159 4.159 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.412 0.588 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.271 0.729 39 H 0.410 0.590 40 H 0.149 0.851 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.537 -5.467 8.115 31.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.044 3.956 4 H 0.102 0.898 5 C -0.008 4.008 6 N -0.366 5.366 7 C 0.322 3.678 8 O -0.440 6.440 9 C -0.282 4.282 10 S 0.079 5.921 11 C -0.693 4.693 12 H 0.100 0.900 13 C -0.192 4.192 14 N -0.547 5.547 15 Si 0.820 3.180 16 H -0.181 1.181 17 H -0.198 1.198 18 H -0.200 1.200 19 N -0.370 5.370 20 C 0.335 3.665 21 O -0.437 6.437 22 C -0.263 4.263 23 C -0.002 4.002 24 C -0.185 4.185 25 C -0.152 4.152 26 C -0.213 4.213 27 C -0.196 4.196 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.248 0.752 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.246 0.754 40 H 0.166 0.834 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.125 0.875 45 H 0.131 0.869 46 H 0.115 0.885 47 H 0.106 0.894 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -28.625 -7.067 7.142 30.338 hybrid contribution -0.098 2.073 0.330 2.101 sum -28.723 -4.995 7.472 30.096 Atomic orbital electron populations 1.21676 0.95133 1.00625 1.01736 1.21862 0.96486 0.94655 1.03648 1.21099 0.91771 0.94854 0.87916 0.89802 1.21703 0.92626 0.83103 1.03364 1.45713 1.06034 1.10455 1.74422 1.19994 0.82665 0.89781 0.75341 1.90703 1.56945 1.46957 1.49377 1.23373 1.01105 0.97104 1.06619 1.85547 0.99253 1.11932 1.95358 1.23227 0.96117 0.92546 1.57406 0.90025 1.26124 0.94759 1.04424 0.93884 1.70183 1.00033 1.37063 1.47454 0.84909 0.78748 0.76235 0.78076 1.18087 1.19842 1.20027 1.45945 1.16729 1.57729 1.16593 1.18796 0.81217 0.78142 0.88365 1.90766 1.51541 1.59784 1.41640 1.22489 0.99953 1.05741 0.98122 1.22067 0.92349 0.90434 0.95307 1.21088 1.02728 1.02444 0.92231 1.21395 0.89921 1.06124 0.97732 1.23231 1.00211 0.93821 1.04081 1.22810 0.98374 0.95404 1.02974 0.92769 0.93550 0.93670 0.89874 0.90605 0.90410 0.90527 0.75160 0.87671 0.87124 0.91990 0.75365 0.83377 0.89300 0.89997 0.89750 0.87453 0.86901 0.88497 0.89396 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.51 71.98 0.61 -1.74 16 2 C -0.13 -1.89 5.61 30.59 0.17 -1.72 16 3 C 0.15 2.42 2.42 44.99 0.11 2.53 16 4 H 0.08 1.63 7.58 -2.39 -0.02 1.61 16 5 C 0.12 2.30 5.23 86.38 0.45 2.76 16 6 N -0.71 -16.91 5.39 -463.05 -2.49 -19.40 16 7 C 0.54 18.98 7.85 87.66 0.69 19.67 16 8 O -0.56 -25.04 15.86 -3.05 -0.05 -25.09 16 9 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 10 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 11 C -0.55 -30.91 9.50 67.96 0.65 -30.27 16 12 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 13 C 0.01 0.73 5.49 84.86 0.47 1.19 16 14 N -0.91 -55.66 13.22 21.65 0.29 -55.37 16 15 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 16 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 N -0.72 -10.50 4.47 -446.14 -1.99 -12.49 16 20 C 0.54 9.71 6.24 86.57 0.54 10.25 16 21 O -0.56 -12.91 10.44 -4.07 -0.04 -12.96 16 22 C -0.24 -3.43 9.62 23.43 0.23 -3.20 16 23 C 0.00 0.00 5.80 -17.62 -0.10 -0.10 16 24 C -0.13 -1.02 9.49 71.24 0.68 -0.35 16 25 C -0.13 -2.25 4.34 -11.54 -0.05 -2.30 16 26 C -0.18 -2.21 9.79 30.62 0.30 -1.91 16 27 C -0.16 -2.37 10.24 30.62 0.31 -2.05 16 28 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.05 0.92 5.64 -2.39 -0.01 0.91 16 30 H 0.04 0.92 7.84 -2.38 -0.02 0.90 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.41 7.95 8.14 -92.71 -0.75 7.19 16 36 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 37 H 0.11 3.82 8.14 -2.39 -0.02 3.81 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.41 4.78 8.59 -92.70 -0.80 3.98 16 40 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.08 0.53 6.37 -2.39 -0.02 0.51 16 43 H 0.08 0.50 8.07 -2.39 -0.02 0.48 16 44 H 0.11 2.40 6.24 -2.39 -0.01 2.39 16 45 H 0.11 1.00 6.31 -2.39 -0.02 0.99 16 46 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 47 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -76.77 405.64 1.48 -75.28 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -0.58 Total: 25.79 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 5.49 Total: -11.88 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -4.20 Total: -87.27 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.09 Total: -38.05 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -76.77 1.48 -75.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704624696.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.327 kcal (2) G-P(sol) polarization free energy of solvation -76.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds