Wall clock time and date at job start Sat Apr 11 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47449 * 2 1 4 4 H 1.09006 * 109.46959 * 55.00010 * 3 2 1 5 5 C 1.52998 * 109.47145 * 174.99956 * 3 2 1 6 6 N 1.46503 * 109.46821 * 175.00317 * 5 3 2 7 7 C 1.34777 * 119.99842 * 180.02562 * 6 5 3 8 8 O 1.21286 * 119.99813 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00159 * 179.97438 * 7 6 5 10 10 H 1.08996 * 110.67070 * 300.70252 * 9 7 6 11 11 C 1.54893 * 110.75340 * 63.93741 * 9 7 6 12 12 C 1.54465 * 104.10229 * 156.10636 * 11 9 7 13 13 H 1.09003 * 117.59932 * 116.93146 * 12 11 9 14 14 C 1.55462 * 118.47619 * 273.01779 * 12 11 9 15 15 C 1.52999 * 59.84249 * 93.30499 * 14 12 11 16 16 H 1.08995 * 119.29903 * 111.70732 * 15 14 12 17 17 C 1.54266 * 118.19565 * 265.85595 * 15 14 12 18 18 N 1.46499 * 109.47214 * 295.00171 * 3 2 1 19 19 C 1.34778 * 120.00278 * 84.99465 * 18 3 2 20 20 O 1.21278 * 119.99748 * 0.02562 * 19 18 3 21 21 C 1.50697 * 120.00209 * 180.02562 * 19 18 3 22 22 S 1.80999 * 109.47181 * 180.02562 * 21 19 18 23 23 C 1.76199 * 99.99825 * 179.97438 * 22 21 19 24 24 H 1.08002 * 120.00405 * 0.02562 * 23 22 21 25 25 C 1.38803 * 119.99855 * 179.72221 * 23 22 21 26 26 N 1.31634 * 119.99756 * 0.27728 * 25 23 22 27 27 Si 1.86803 * 120.00005 * 180.27923 * 25 23 22 28 28 H 1.48496 * 109.47141 * 59.99753 * 27 25 23 29 29 H 1.48497 * 109.46782 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.46993 * 300.00030 * 27 25 23 31 31 H 1.09002 * 109.47052 * 300.00316 * 1 2 3 32 32 H 1.08996 * 109.46654 * 59.99902 * 1 2 3 33 33 H 1.08996 * 109.47328 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47052 * 239.99684 * 2 1 3 35 35 H 1.09006 * 109.46780 * 120.00153 * 2 1 3 36 36 H 1.09001 * 109.46887 * 294.99886 * 5 3 2 37 37 H 1.09000 * 109.47147 * 55.00088 * 5 3 2 38 38 H 0.97002 * 120.00465 * 359.97438 * 6 5 3 39 39 H 1.09002 * 110.48545 * 274.93427 * 11 9 7 40 40 H 1.09000 * 110.49149 * 37.57276 * 11 9 7 41 41 H 1.09004 * 118.06380 * 346.16546 * 14 12 11 42 42 H 1.09001 * 117.16487 * 200.83826 * 14 12 11 43 43 H 1.08996 * 110.49266 * 330.31504 * 17 15 14 44 44 H 1.09001 * 110.48445 * 207.67228 * 17 15 14 45 45 H 0.97000 * 119.99972 * 264.99821 * 18 3 2 46 46 H 1.08999 * 109.47278 * 59.99800 * 21 19 18 47 47 H 1.09002 * 109.46837 * 300.00183 * 21 19 18 48 48 H 0.97000 * 119.99219 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4442 0.1257 6 7 4.0631 2.8167 0.0060 7 6 5.3858 3.0628 0.0859 8 8 6.1636 2.1480 0.2573 9 6 5.8985 4.4745 -0.0378 10 1 5.6129 4.9048 -0.9977 11 6 5.3831 5.3500 1.1314 12 6 6.4177 6.4926 1.2305 13 1 6.0686 7.5078 1.0416 14 6 7.6857 6.2709 2.1023 15 6 7.7202 5.9649 0.6036 16 1 8.3257 6.5882 -0.0543 17 6 7.4355 4.5187 0.1483 18 7 1.6526 2.0975 -1.2518 19 6 0.4353 2.6644 -1.3670 20 8 -0.3391 2.6327 -0.4342 21 6 0.0364 3.3377 -2.6548 22 16 -1.6420 3.9966 -2.4966 23 6 -1.8436 4.7076 -4.0961 24 1 -1.0437 4.6460 -4.8192 25 6 -3.0328 5.3414 -4.4289 26 7 -4.0078 5.4160 -3.5478 27 14 -3.2494 6.0883 -6.1274 28 1 -3.1082 5.0272 -7.1565 29 1 -4.5979 6.7017 -6.2299 30 1 -2.2142 7.1304 -6.3455 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.8499 1.0376 1.0961 37 1 3.9955 0.8310 -0.6659 38 1 3.4412 3.5483 -0.1315 39 1 4.3934 5.7461 0.9039 40 1 5.3614 4.7756 2.0575 41 1 7.6944 5.4241 2.7886 42 1 8.2149 7.1597 2.4461 43 1 7.7476 3.8090 0.9144 44 1 7.9400 4.3095 -0.7950 45 1 2.2721 2.1231 -1.9977 46 1 0.0675 2.6131 -3.4685 47 1 0.7278 4.1530 -2.8678 48 1 -4.8387 5.8593 -3.7803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704673595.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:34 Heat of formation + Delta-G solvation = -64.751444 kcal Electronic energy + Delta-G solvation = -27056.700658 eV Core-core repulsion = 23237.850342 eV Total energy + Delta-G solvation = -3818.850315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.70297 -39.74642 -38.64129 -36.48616 -34.10632 -32.48627 -32.45026 -32.21483 -29.48686 -28.63988 -28.14156 -25.52671 -24.69163 -22.95137 -21.54596 -21.28643 -20.41608 -20.11723 -19.95219 -17.93926 -17.37356 -16.77894 -16.70039 -16.30964 -15.87682 -15.38622 -15.27417 -14.84043 -14.41802 -14.26645 -13.81231 -13.59036 -13.57592 -13.45373 -13.37094 -13.11351 -12.91629 -12.54569 -12.32673 -11.96999 -11.81377 -11.68371 -11.58035 -11.45771 -11.42845 -11.21244 -11.07746 -11.07094 -10.82839 -10.78222 -10.37900 -10.17382 -9.87614 -9.86150 -9.48249 -9.33918 -9.10093 -8.94654 -8.29361 -6.54627 -6.25720 -3.96546 2.35968 2.80810 2.96704 3.02736 3.20434 3.22364 3.24882 3.27853 3.64523 4.04540 4.16699 4.24846 4.37492 4.40821 4.69790 4.75918 4.82658 4.86032 4.98859 5.01609 5.08692 5.09610 5.09957 5.18575 5.22442 5.34373 5.40349 5.42974 5.43454 5.56581 5.58833 5.73410 5.75526 5.79213 5.81015 5.85526 5.86756 5.98562 6.02290 6.07949 6.14013 6.20629 6.53551 6.60240 7.20422 7.55231 7.60740 7.94385 8.30857 8.53093 9.19783 10.81551 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.002560 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.607820 B =10937.007071 C =12939.035431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.135 3.865 4 H 0.096 0.904 5 C 0.112 3.888 6 N -0.727 5.727 7 C 0.522 3.478 8 O -0.542 6.542 9 C -0.115 4.115 10 H 0.106 0.894 11 C -0.085 4.085 12 C -0.167 4.167 13 H 0.115 0.885 14 C -0.154 4.154 15 C -0.165 4.165 16 H 0.110 0.890 17 C -0.076 4.076 18 N -0.736 5.736 19 C 0.533 3.467 20 O -0.508 6.508 21 C -0.155 4.155 22 S -0.057 6.057 23 C -0.537 4.537 24 H 0.072 0.928 25 C 0.074 3.926 26 N -0.867 5.867 27 Si 0.918 3.082 28 H -0.274 1.274 29 H -0.283 1.283 30 H -0.274 1.274 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.406 0.594 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.398 0.602 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.717 -3.362 8.434 23.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.114 0.886 5 C -0.012 4.012 6 N -0.380 5.380 7 C 0.308 3.692 8 O -0.418 6.418 9 C -0.136 4.136 10 H 0.124 0.876 11 C -0.123 4.123 12 C -0.185 4.185 13 H 0.133 0.867 14 C -0.191 4.191 15 C -0.183 4.183 16 H 0.128 0.872 17 C -0.113 4.113 18 N -0.392 5.392 19 C 0.319 3.681 20 O -0.381 6.381 21 C -0.306 4.306 22 S 0.169 5.831 23 C -0.685 4.685 24 H 0.090 0.910 25 C -0.135 4.135 26 N -0.503 5.503 27 Si 0.744 3.256 28 H -0.199 1.199 29 H -0.208 1.208 30 H -0.199 1.199 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.241 0.759 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.232 0.768 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 20.769 -4.030 10.161 23.470 hybrid contribution 0.693 0.913 -2.749 2.978 sum 21.462 -3.117 7.412 22.919 Atomic orbital electron populations 1.21805 0.93983 1.00739 1.03852 1.21881 0.97820 0.94963 1.02184 1.21242 0.92336 0.94722 0.88775 0.88634 1.21687 0.92796 0.83605 1.03115 1.46039 1.07685 1.09974 1.74286 1.20524 0.81955 0.90996 0.75675 1.90701 1.55936 1.46462 1.48747 1.22526 0.97394 0.92262 1.01458 0.87594 1.21932 0.98355 0.94726 0.97280 1.23619 0.89083 0.99393 1.06429 0.86722 1.23450 0.99637 1.03012 0.92977 1.23275 1.01633 0.97436 0.95918 0.87151 1.21781 0.92617 0.94531 1.02419 1.46127 1.17445 1.59481 1.16112 1.20263 0.80771 0.77474 0.89601 1.90722 1.50247 1.57130 1.40041 1.23548 1.07098 1.02811 0.97112 1.85377 1.06425 1.70814 1.20454 1.22822 1.03846 1.42369 0.99485 0.91025 1.24988 0.94825 0.95535 0.98180 1.70004 1.04975 1.40995 1.34288 0.86235 0.77551 0.79253 0.82536 1.19941 1.20796 1.19932 0.91996 0.91741 0.93574 0.91716 0.91194 0.90079 0.90833 0.75916 0.90102 0.90894 0.88841 0.88323 0.90083 0.90738 0.76808 0.89339 0.89355 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.52 37.16 0.32 -1.60 16 2 C -0.13 -1.29 5.61 -26.73 -0.15 -1.44 16 3 C 0.13 1.35 2.42 -67.93 -0.16 1.18 16 4 H 0.10 1.11 7.58 -51.93 -0.39 0.72 16 5 C 0.11 0.98 5.23 -4.04 -0.02 0.96 16 6 N -0.73 -6.32 5.37 -60.29 -0.32 -6.65 16 7 C 0.52 5.29 7.14 -10.98 -0.08 5.21 16 8 O -0.54 -7.35 15.75 5.55 0.09 -7.27 16 9 C -0.12 -0.93 3.28 -89.78 -0.29 -1.22 16 10 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 11 C -0.09 -0.64 6.09 -24.96 -0.15 -0.79 16 12 C -0.17 -1.20 7.03 -88.09 -0.62 -1.82 16 13 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 14 C -0.15 -1.05 10.22 -25.42 -0.26 -1.31 16 15 C -0.16 -1.19 6.85 -89.50 -0.61 -1.80 16 16 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 17 C -0.08 -0.63 5.68 -25.07 -0.14 -0.77 16 18 N -0.74 -8.27 4.47 -53.81 -0.24 -8.51 16 19 C 0.53 8.66 6.42 -10.99 -0.07 8.59 16 20 O -0.51 -10.04 13.00 5.56 0.07 -9.97 16 21 C -0.16 -2.88 6.16 36.00 0.22 -2.66 16 22 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 23 C -0.54 -14.85 9.50 30.94 0.29 -14.55 16 24 H 0.07 1.87 7.80 -52.49 -0.41 1.47 16 25 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 26 N -0.87 -25.63 13.22 55.49 0.73 -24.90 16 27 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 31 H 0.06 0.88 7.85 -51.93 -0.41 0.48 16 32 H 0.06 1.02 5.65 -51.93 -0.29 0.73 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.41 3.26 8.14 -40.82 -0.33 2.92 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.80 7.48 -51.93 -0.39 0.41 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.40 3.65 8.60 -40.82 -0.35 3.29 16 46 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 47 H 0.09 1.50 8.14 -51.91 -0.42 1.08 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 402.32 15.07 6.06 6.06 Total: -1.00 -33.61 402.32 -10.72 -44.33 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -8.05 Total: 4.68 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -1.83 Total: -10.05 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.17 Total: -40.05 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.16 Total: -17.24 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.61 -10.72 -44.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704673595.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.425 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds