Wall clock time and date at job start Sat Apr 11 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47449 * 2 1 4 4 H 1.09006 * 109.46959 * 55.00010 * 3 2 1 5 5 C 1.52998 * 109.47145 * 174.99956 * 3 2 1 6 6 N 1.46503 * 109.46821 * 175.00317 * 5 3 2 7 7 C 1.34777 * 119.99842 * 180.02562 * 6 5 3 8 8 O 1.21286 * 119.99813 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00159 * 179.97438 * 7 6 5 10 10 H 1.08996 * 110.67070 * 300.70252 * 9 7 6 11 11 C 1.54893 * 110.75340 * 63.93741 * 9 7 6 12 12 C 1.54465 * 104.10229 * 156.10636 * 11 9 7 13 13 H 1.09003 * 117.59932 * 116.93146 * 12 11 9 14 14 C 1.55462 * 118.47619 * 273.01779 * 12 11 9 15 15 C 1.52999 * 59.84249 * 93.30499 * 14 12 11 16 16 H 1.08995 * 119.29903 * 111.70732 * 15 14 12 17 17 C 1.54266 * 118.19565 * 265.85595 * 15 14 12 18 18 N 1.46499 * 109.47214 * 295.00171 * 3 2 1 19 19 C 1.34778 * 120.00278 * 84.99465 * 18 3 2 20 20 O 1.21278 * 119.99748 * 0.02562 * 19 18 3 21 21 C 1.50697 * 120.00209 * 180.02562 * 19 18 3 22 22 S 1.80999 * 109.47181 * 180.02562 * 21 19 18 23 23 C 1.76199 * 99.99825 * 179.97438 * 22 21 19 24 24 H 1.08002 * 120.00405 * 0.02562 * 23 22 21 25 25 C 1.38803 * 119.99855 * 179.72221 * 23 22 21 26 26 N 1.31634 * 119.99756 * 0.27728 * 25 23 22 27 27 Si 1.86803 * 120.00005 * 180.27923 * 25 23 22 28 28 H 1.48496 * 109.47141 * 59.99753 * 27 25 23 29 29 H 1.48497 * 109.46782 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.46993 * 300.00030 * 27 25 23 31 31 H 1.09002 * 109.47052 * 300.00316 * 1 2 3 32 32 H 1.08996 * 109.46654 * 59.99902 * 1 2 3 33 33 H 1.08996 * 109.47328 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47052 * 239.99684 * 2 1 3 35 35 H 1.09006 * 109.46780 * 120.00153 * 2 1 3 36 36 H 1.09001 * 109.46887 * 294.99886 * 5 3 2 37 37 H 1.09000 * 109.47147 * 55.00088 * 5 3 2 38 38 H 0.97002 * 120.00465 * 359.97438 * 6 5 3 39 39 H 1.09002 * 110.48545 * 274.93427 * 11 9 7 40 40 H 1.09000 * 110.49149 * 37.57276 * 11 9 7 41 41 H 1.09004 * 118.06380 * 346.16546 * 14 12 11 42 42 H 1.09001 * 117.16487 * 200.83826 * 14 12 11 43 43 H 1.08996 * 110.49266 * 330.31504 * 17 15 14 44 44 H 1.09001 * 110.48445 * 207.67228 * 17 15 14 45 45 H 0.97000 * 119.99972 * 264.99821 * 18 3 2 46 46 H 1.08999 * 109.47278 * 59.99800 * 21 19 18 47 47 H 1.09002 * 109.46837 * 300.00183 * 21 19 18 48 48 H 0.97000 * 119.99219 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4442 0.1257 6 7 4.0631 2.8167 0.0060 7 6 5.3858 3.0628 0.0859 8 8 6.1636 2.1480 0.2573 9 6 5.8985 4.4745 -0.0378 10 1 5.6129 4.9048 -0.9977 11 6 5.3831 5.3500 1.1314 12 6 6.4177 6.4926 1.2305 13 1 6.0686 7.5078 1.0416 14 6 7.6857 6.2709 2.1023 15 6 7.7202 5.9649 0.6036 16 1 8.3257 6.5882 -0.0543 17 6 7.4355 4.5187 0.1483 18 7 1.6526 2.0975 -1.2518 19 6 0.4353 2.6644 -1.3670 20 8 -0.3391 2.6327 -0.4342 21 6 0.0364 3.3377 -2.6548 22 16 -1.6420 3.9966 -2.4966 23 6 -1.8436 4.7076 -4.0961 24 1 -1.0437 4.6460 -4.8192 25 6 -3.0328 5.3414 -4.4289 26 7 -4.0078 5.4160 -3.5478 27 14 -3.2494 6.0883 -6.1274 28 1 -3.1082 5.0272 -7.1565 29 1 -4.5979 6.7017 -6.2299 30 1 -2.2142 7.1304 -6.3455 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.8499 1.0376 1.0961 37 1 3.9955 0.8310 -0.6659 38 1 3.4412 3.5483 -0.1315 39 1 4.3934 5.7461 0.9039 40 1 5.3614 4.7756 2.0575 41 1 7.6944 5.4241 2.7886 42 1 8.2149 7.1597 2.4461 43 1 7.7476 3.8090 0.9144 44 1 7.9400 4.3095 -0.7950 45 1 2.2721 2.1231 -1.9977 46 1 0.0675 2.6131 -3.4685 47 1 0.7278 4.1530 -2.8678 48 1 -4.8387 5.8593 -3.7803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704673595.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:34 Heat of formation + Delta-G solvation = -86.585537 kcal Electronic energy + Delta-G solvation = -27057.647455 eV Core-core repulsion = 23237.850342 eV Total energy + Delta-G solvation = -3819.797113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.48946 -40.84612 -39.39323 -37.53477 -35.00313 -34.56687 -33.60127 -32.86591 -30.73519 -29.42867 -29.02913 -27.63054 -25.47886 -23.70956 -22.55338 -21.94694 -21.55016 -20.84527 -20.56053 -19.80443 -18.23916 -17.93113 -17.44636 -17.20038 -16.91205 -16.86134 -16.47985 -16.24128 -15.87788 -15.20233 -14.91864 -14.65358 -14.58923 -14.41021 -14.24355 -14.09208 -13.97521 -13.66127 -13.46460 -13.15116 -12.99057 -12.85282 -12.64124 -12.60493 -12.48523 -12.29317 -12.21254 -12.09166 -11.99969 -11.77691 -11.70510 -11.11596 -10.98125 -10.86112 -10.83307 -10.53953 -10.24303 -10.15674 -10.04045 -8.62647 -8.33394 -6.09862 1.28801 1.43854 1.47936 1.56467 1.58262 1.68532 2.08409 2.27684 2.34326 2.65762 3.00838 3.34424 3.41889 3.55127 3.66722 3.81345 3.97968 4.01459 4.08795 4.14048 4.18294 4.25488 4.34652 4.39890 4.43586 4.49343 4.53315 4.56845 4.62125 4.67025 4.73091 4.84428 4.90523 4.93617 5.01780 5.06193 5.12291 5.18376 5.19031 5.31326 5.35591 5.42378 5.43155 5.49165 5.55348 6.20819 6.44950 6.52942 7.08502 7.16964 7.30752 8.75182 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.002560 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.607820 B =10937.007071 C =12939.035431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C 0.142 3.858 4 H 0.081 0.919 5 C 0.121 3.879 6 N -0.720 5.720 7 C 0.523 3.477 8 O -0.578 6.578 9 C -0.111 4.111 10 H 0.122 0.878 11 C -0.084 4.084 12 C -0.170 4.170 13 H 0.124 0.876 14 C -0.156 4.156 15 C -0.165 4.165 16 H 0.121 0.879 17 C -0.077 4.077 18 N -0.711 5.711 19 C 0.539 3.461 20 O -0.547 6.547 21 C -0.132 4.132 22 S -0.144 6.144 23 C -0.547 4.547 24 H 0.081 0.919 25 C 0.014 3.986 26 N -0.911 5.911 27 Si 0.994 3.006 28 H -0.264 1.264 29 H -0.280 1.280 30 H -0.262 1.262 31 H 0.042 0.958 32 H 0.033 0.967 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.411 0.589 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.413 0.587 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.699 -3.168 7.151 24.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.037 3.963 4 H 0.099 0.901 5 C -0.003 4.003 6 N -0.372 5.372 7 C 0.311 3.689 8 O -0.458 6.458 9 C -0.132 4.132 10 H 0.140 0.860 11 C -0.122 4.122 12 C -0.188 4.188 13 H 0.142 0.858 14 C -0.192 4.192 15 C -0.183 4.183 16 H 0.139 0.861 17 C -0.115 4.115 18 N -0.366 5.366 19 C 0.325 3.675 20 O -0.424 6.424 21 C -0.284 4.284 22 S 0.083 5.917 23 C -0.695 4.695 24 H 0.099 0.901 25 C -0.191 4.191 26 N -0.547 5.547 27 Si 0.816 3.184 28 H -0.189 1.189 29 H -0.205 1.205 30 H -0.186 1.186 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.247 0.753 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.250 0.750 46 H 0.121 0.879 47 H 0.128 0.872 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.787 -3.845 8.868 24.753 hybrid contribution 0.161 0.762 -2.274 2.404 sum 22.948 -3.083 6.594 24.075 Atomic orbital electron populations 1.21735 0.96373 1.00624 1.01366 1.21862 0.95399 0.94971 1.04066 1.21252 0.93185 0.94568 0.87280 0.90072 1.21615 0.91262 0.83740 1.03727 1.46005 1.07449 1.10204 1.73555 1.20839 0.81896 0.91393 0.74816 1.90689 1.56831 1.47665 1.50587 1.22546 0.97133 0.91108 1.02419 0.86045 1.21923 0.98967 0.94687 0.96584 1.23687 0.88933 0.99616 1.06536 0.85834 1.23525 0.99643 1.03348 0.92719 1.23294 1.01940 0.96749 0.96351 0.86069 1.21751 0.92908 0.94887 1.01915 1.45825 1.15755 1.57802 1.17188 1.19848 0.81836 0.77591 0.88210 1.90725 1.51803 1.58857 1.40991 1.23392 1.02259 1.03688 0.99026 1.85523 1.13094 1.71861 1.21186 1.23176 1.04325 1.42169 0.99781 0.90088 1.26078 0.94416 0.95951 1.02613 1.70170 1.05620 1.42207 1.36723 0.85063 0.77713 0.78614 0.76995 1.18852 1.20541 1.18606 0.93903 0.94790 0.92487 0.90276 0.88855 0.89590 0.90035 0.75324 0.89267 0.91859 0.89501 0.86981 0.92014 0.90578 0.75029 0.87904 0.87246 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 8.52 71.98 0.61 -3.08 16 2 C -0.12 -2.20 5.61 30.59 0.17 -2.03 16 3 C 0.14 2.57 2.42 44.99 0.11 2.68 16 4 H 0.08 1.81 7.58 -2.38 -0.02 1.79 16 5 C 0.12 1.81 5.23 86.38 0.45 2.27 16 6 N -0.72 -11.09 5.37 -463.05 -2.49 -13.57 16 7 C 0.52 9.84 7.14 87.66 0.63 10.46 16 8 O -0.58 -15.16 15.75 -3.05 -0.05 -15.21 16 9 C -0.11 -1.62 3.28 -10.25 -0.03 -1.65 16 10 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 11 C -0.08 -1.13 6.09 31.74 0.19 -0.94 16 12 C -0.17 -2.15 7.03 -9.15 -0.06 -2.22 16 13 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 14 C -0.16 -1.93 10.22 31.44 0.32 -1.61 16 15 C -0.17 -2.14 6.85 -10.07 -0.07 -2.21 16 16 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 17 C -0.08 -1.21 5.68 31.67 0.18 -1.03 16 18 N -0.71 -14.56 4.47 -442.54 -1.98 -16.54 16 19 C 0.54 17.15 6.42 87.66 0.56 17.71 16 20 O -0.55 -22.01 13.00 -3.02 -0.04 -22.05 16 21 C -0.13 -4.79 6.16 71.23 0.44 -4.35 16 22 S -0.14 -7.59 20.57 -56.49 -1.16 -8.76 16 23 C -0.55 -30.26 9.50 67.96 0.65 -29.62 16 24 H 0.08 4.16 7.80 -2.91 -0.02 4.14 16 25 C 0.01 0.80 5.49 84.86 0.47 1.26 16 26 N -0.91 -54.90 13.22 21.65 0.29 -54.62 16 27 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 28 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 29 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 30 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 31 H 0.04 1.24 7.85 -2.39 -0.02 1.22 16 32 H 0.03 1.07 5.65 -2.39 -0.01 1.06 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.41 5.69 8.14 -92.71 -0.75 4.94 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 0.98 8.04 -2.39 -0.02 0.96 16 41 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 42 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 1.21 7.48 -2.39 -0.02 1.20 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.41 6.30 8.60 -92.71 -0.80 5.50 16 46 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 47 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 48 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -75.32 402.32 0.63 -74.69 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -0.58 Total: 25.69 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 4.61 Total: -14.35 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -4.18 Total: -84.73 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.09 Total: -37.25 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -7.59 SS G_CDS: -1.16 Total: -8.76 kcal Total: -75.32 0.63 -74.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704673595.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.895 kcal (2) G-P(sol) polarization free energy of solvation -75.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds