Wall clock time and date at job start Sat Apr 11 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21272 * 120.00513 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99846 * 180.02562 * 7 6 5 10 10 C 1.53887 * 113.58808 * 279.21814 * 9 7 6 11 11 C 1.53422 * 86.82473 * 220.45324 * 10 9 7 12 12 C 1.52462 * 128.60761 * 165.09604 * 11 10 9 13 13 C 1.52463 * 128.52133 * 245.01851 * 11 10 9 14 14 C 1.53258 * 87.71774 * 25.01664 * 11 10 9 15 15 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 16 16 C 1.34777 * 119.99828 * 274.72131 * 15 3 2 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 3 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 3 19 19 S 1.81000 * 109.47389 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99715 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00516 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99710 * 179.97438 * 20 19 18 23 23 N 1.31634 * 120.00163 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00011 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46661 * 60.00586 * 24 22 20 26 26 H 1.48501 * 109.47391 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47355 * 300.00441 * 24 22 20 28 28 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 29 29 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 34 34 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 35 35 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 36 36 H 1.09002 * 112.83095 * 50.33254 * 9 7 6 37 37 H 1.08995 * 113.64506 * 334.92608 * 10 9 7 38 38 H 1.09000 * 113.64646 * 105.93398 * 10 9 7 39 39 H 1.08997 * 117.51295 * 224.96193 * 12 11 10 40 40 H 1.08993 * 117.51051 * 10.06653 * 12 11 10 41 41 H 1.08998 * 117.51432 * 349.79605 * 13 11 10 42 42 H 1.08997 * 117.51357 * 134.86825 * 13 11 10 43 43 H 1.09008 * 113.64609 * 220.48349 * 14 11 10 44 44 H 1.08993 * 113.72703 * 89.49851 * 14 11 10 45 45 H 0.97001 * 120.00384 * 95.00578 * 15 3 2 46 46 H 1.08998 * 109.46954 * 300.00581 * 18 16 15 47 47 H 1.09002 * 109.46946 * 59.99717 * 18 16 15 48 48 H 0.96991 * 119.99795 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1634 2.1484 -0.2592 9 6 5.8984 4.4747 0.0368 10 6 5.7817 5.2883 -1.2642 11 6 7.1654 5.8607 -0.9297 12 6 8.1257 6.6202 -1.8383 13 6 7.5423 7.2998 -0.5962 14 6 7.4255 4.5906 -0.1124 15 7 1.6525 2.0974 1.2518 16 6 0.4374 2.6692 1.3650 17 8 -0.3373 2.6371 0.4323 18 6 0.0409 3.3485 2.6505 19 16 -1.6355 4.0117 2.4905 20 6 -1.8350 4.7278 4.0880 21 1 -1.0350 4.6667 4.8110 22 6 -3.0199 5.3715 4.4170 23 7 -3.9948 5.4465 3.5357 24 14 -3.2317 6.1301 6.1108 25 1 -2.1896 7.1667 6.3226 26 1 -4.5765 6.7521 6.2101 27 1 -3.0974 5.0744 7.1464 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9955 0.8311 0.6660 34 1 3.8500 1.0376 -1.0960 35 1 3.4412 3.5482 0.1314 36 1 5.5051 4.9923 0.9117 37 1 5.7687 4.6739 -2.1644 38 1 4.9843 6.0311 -1.2453 39 1 9.1775 6.3357 -1.8093 40 1 7.7515 6.9411 -2.8103 41 1 6.7845 8.0678 -0.7516 42 1 8.2099 7.4623 0.2499 43 1 7.9441 4.7747 0.8285 44 1 7.8711 3.7809 -0.6902 45 1 2.2720 2.1232 1.9978 46 1 0.0694 2.6265 3.4667 47 1 0.7354 4.1619 2.8608 48 1 -4.8230 5.8959 3.7657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704681427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:39 Heat of formation + Delta-G solvation = -39.064332 kcal Electronic energy + Delta-G solvation = -26821.830497 eV Core-core repulsion = 23004.094058 eV Total energy + Delta-G solvation = -3817.736439 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.78583 -39.77086 -38.63022 -36.47594 -34.10418 -33.85857 -32.47762 -32.44146 -29.55920 -28.37452 -26.12848 -25.54316 -25.19491 -22.99902 -22.73308 -21.51351 -20.43008 -20.27696 -18.72834 -17.95393 -17.46389 -16.71866 -16.46718 -15.93953 -15.86304 -15.52716 -15.23532 -15.00703 -14.83804 -14.48035 -14.22851 -13.63483 -13.49361 -13.24201 -13.13287 -12.94925 -12.69539 -12.53425 -12.39576 -12.33492 -11.91033 -11.84620 -11.74190 -11.47738 -11.22754 -11.07563 -11.06926 -10.82628 -10.78027 -10.72735 -10.67215 -10.10396 -9.85997 -9.84746 -9.47365 -9.32377 -9.09885 -8.94141 -8.29083 -6.54378 -6.25474 -3.96308 2.37402 2.82869 2.97563 3.03409 3.20594 3.24892 3.27823 3.40025 3.65135 3.96438 4.15965 4.16918 4.27224 4.38356 4.44110 4.51282 4.80385 4.87679 4.96649 5.00332 5.09552 5.10020 5.22453 5.28338 5.30951 5.36951 5.40656 5.42371 5.45926 5.49922 5.57112 5.63765 5.76016 5.77615 5.81499 5.84801 5.86333 5.94266 6.02551 6.08366 6.15687 6.21183 6.54175 6.60602 7.23309 7.55460 7.61440 7.97162 8.31091 8.53668 9.19990 10.81804 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009549 B = 0.002522 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.543657 B =11099.443960 C =13364.706931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.135 3.865 4 H 0.096 0.904 5 C 0.112 3.888 6 N -0.727 5.727 7 C 0.524 3.476 8 O -0.542 6.542 9 C -0.133 4.133 10 C -0.082 4.082 11 C -0.165 4.165 12 C -0.165 4.165 13 C -0.151 4.151 14 C -0.074 4.074 15 N -0.736 5.736 16 C 0.533 3.467 17 O -0.508 6.508 18 C -0.155 4.155 19 S -0.057 6.057 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.406 0.594 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.398 0.602 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.085 -3.114 -8.378 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.114 0.886 5 C -0.012 4.012 6 N -0.379 5.379 7 C 0.311 3.689 8 O -0.419 6.419 9 C -0.155 4.155 10 C -0.120 4.120 11 C -0.165 4.165 12 C -0.202 4.202 13 C -0.187 4.187 14 C -0.112 4.112 15 N -0.391 5.391 16 C 0.319 3.681 17 O -0.382 6.382 18 C -0.306 4.306 19 S 0.169 5.831 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.241 0.759 36 H 0.134 0.866 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.232 0.768 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.138 -3.781 -10.114 23.736 hybrid contribution 0.664 0.869 2.698 2.911 sum 21.802 -2.912 -7.416 23.212 Atomic orbital electron populations 1.21802 0.93998 1.00730 1.03840 1.21879 0.97809 0.94973 1.02179 1.21241 0.92356 0.94713 0.88764 0.88646 1.21686 0.92784 0.83672 1.03089 1.46039 1.07744 1.09912 1.74232 1.20501 0.81903 0.90929 0.75593 1.90688 1.56009 1.46352 1.48875 1.22638 0.98864 0.92946 1.01003 1.22438 0.95468 0.97999 0.96086 1.22172 0.97204 0.93455 1.03628 1.22804 0.98686 1.03684 0.95055 1.22811 1.03138 0.93329 0.99465 1.22365 0.93537 0.95498 0.99786 1.46123 1.17578 1.59317 1.16124 1.20266 0.80776 0.77502 0.89569 1.90723 1.50148 1.57314 1.39989 1.23549 1.07083 1.02777 0.97151 1.85377 1.06622 1.70490 1.20597 1.22822 1.04090 1.41953 0.99650 0.91023 1.24987 0.94834 0.95554 0.98157 1.70000 1.05116 1.40847 1.34304 0.86235 0.77550 0.79270 0.82519 1.19931 1.20799 1.19943 0.92005 0.93574 0.91750 0.91199 0.91716 0.90850 0.90109 0.75911 0.86604 0.89278 0.90287 0.88650 0.88642 0.88410 0.88505 0.90921 0.88341 0.76797 0.89337 0.89355 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.52 37.16 0.32 -1.60 16 2 C -0.13 -1.30 5.61 -26.73 -0.15 -1.45 16 3 C 0.13 1.36 2.41 -67.93 -0.16 1.19 16 4 H 0.10 1.12 7.57 -51.93 -0.39 0.73 16 5 C 0.11 0.99 5.23 -4.04 -0.02 0.96 16 6 N -0.73 -6.41 5.39 -60.29 -0.32 -6.73 16 7 C 0.52 5.36 7.35 -10.98 -0.08 5.28 16 8 O -0.54 -7.41 15.90 5.56 0.09 -7.33 16 9 C -0.13 -1.08 4.14 -90.85 -0.38 -1.45 16 10 C -0.08 -0.62 7.66 -26.05 -0.20 -0.82 16 11 C -0.16 -1.23 3.09 -154.71 -0.48 -1.71 16 12 C -0.17 -1.11 10.53 -26.94 -0.28 -1.39 16 13 C -0.15 -0.99 10.53 -26.94 -0.28 -1.27 16 14 C -0.07 -0.61 7.42 -26.14 -0.19 -0.81 16 15 N -0.74 -8.33 4.47 -53.81 -0.24 -8.57 16 16 C 0.53 8.71 6.43 -10.98 -0.07 8.64 16 17 O -0.51 -10.10 13.01 5.55 0.07 -10.02 16 18 C -0.15 -2.89 6.16 36.01 0.22 -2.67 16 19 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 20 C -0.54 -14.87 9.50 30.94 0.29 -14.57 16 21 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.65 13.22 55.49 0.73 -24.92 16 24 Si 0.92 21.00 29.55 -169.99 -5.02 15.98 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.06 0.88 7.85 -51.93 -0.41 0.48 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.02 5.66 -51.93 -0.29 0.73 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 35 H 0.41 3.31 8.14 -40.82 -0.33 2.98 16 36 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.10 0.95 7.44 -51.93 -0.39 0.56 16 45 H 0.40 3.68 8.60 -40.82 -0.35 3.33 16 46 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 47 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 406.97 15.07 6.13 6.13 Total: -1.00 -33.71 406.97 -10.39 -44.10 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -8.05 Total: 4.76 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.56 Total: -9.70 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.17 Total: -40.22 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.16 Total: -17.35 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.71 -10.39 -44.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704681427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.031 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds