Wall clock time and date at job start Sat Apr 11 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21272 * 120.00513 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99846 * 180.02562 * 7 6 5 10 10 C 1.53887 * 113.58808 * 279.21814 * 9 7 6 11 11 C 1.53422 * 86.82473 * 220.45324 * 10 9 7 12 12 C 1.52462 * 128.60761 * 165.09604 * 11 10 9 13 13 C 1.52463 * 128.52133 * 245.01851 * 11 10 9 14 14 C 1.53258 * 87.71774 * 25.01664 * 11 10 9 15 15 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 16 16 C 1.34777 * 119.99828 * 274.72131 * 15 3 2 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 3 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 3 19 19 S 1.81000 * 109.47389 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99715 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00516 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99710 * 179.97438 * 20 19 18 23 23 N 1.31634 * 120.00163 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00011 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46661 * 60.00586 * 24 22 20 26 26 H 1.48501 * 109.47391 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47355 * 300.00441 * 24 22 20 28 28 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 29 29 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 34 34 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 35 35 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 36 36 H 1.09002 * 112.83095 * 50.33254 * 9 7 6 37 37 H 1.08995 * 113.64506 * 334.92608 * 10 9 7 38 38 H 1.09000 * 113.64646 * 105.93398 * 10 9 7 39 39 H 1.08997 * 117.51295 * 224.96193 * 12 11 10 40 40 H 1.08993 * 117.51051 * 10.06653 * 12 11 10 41 41 H 1.08998 * 117.51432 * 349.79605 * 13 11 10 42 42 H 1.08997 * 117.51357 * 134.86825 * 13 11 10 43 43 H 1.09008 * 113.64609 * 220.48349 * 14 11 10 44 44 H 1.08993 * 113.72703 * 89.49851 * 14 11 10 45 45 H 0.97001 * 120.00384 * 95.00578 * 15 3 2 46 46 H 1.08998 * 109.46954 * 300.00581 * 18 16 15 47 47 H 1.09002 * 109.46946 * 59.99717 * 18 16 15 48 48 H 0.96991 * 119.99795 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1634 2.1484 -0.2592 9 6 5.8984 4.4747 0.0368 10 6 5.7817 5.2883 -1.2642 11 6 7.1654 5.8607 -0.9297 12 6 8.1257 6.6202 -1.8383 13 6 7.5423 7.2998 -0.5962 14 6 7.4255 4.5906 -0.1124 15 7 1.6525 2.0974 1.2518 16 6 0.4374 2.6692 1.3650 17 8 -0.3373 2.6371 0.4323 18 6 0.0409 3.3485 2.6505 19 16 -1.6355 4.0117 2.4905 20 6 -1.8350 4.7278 4.0880 21 1 -1.0350 4.6667 4.8110 22 6 -3.0199 5.3715 4.4170 23 7 -3.9948 5.4465 3.5357 24 14 -3.2317 6.1301 6.1108 25 1 -2.1896 7.1667 6.3226 26 1 -4.5765 6.7521 6.2101 27 1 -3.0974 5.0744 7.1464 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9955 0.8311 0.6660 34 1 3.8500 1.0376 -1.0960 35 1 3.4412 3.5482 0.1314 36 1 5.5051 4.9923 0.9117 37 1 5.7687 4.6739 -2.1644 38 1 4.9843 6.0311 -1.2453 39 1 9.1775 6.3357 -1.8093 40 1 7.7515 6.9411 -2.8103 41 1 6.7845 8.0678 -0.7516 42 1 8.2099 7.4623 0.2499 43 1 7.9441 4.7747 0.8285 44 1 7.8711 3.7809 -0.6902 45 1 2.2720 2.1232 1.9978 46 1 0.0694 2.6265 3.4667 47 1 0.7354 4.1619 2.8608 48 1 -4.8230 5.8959 3.7657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704681427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:38 Heat of formation + Delta-G solvation = -60.926467 kcal Electronic energy + Delta-G solvation = -26822.778510 eV Core-core repulsion = 23004.094058 eV Total energy + Delta-G solvation = -3818.684452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.54626 -40.88529 -39.40171 -37.52542 -34.97483 -34.56895 -34.48434 -33.59059 -30.78789 -29.47072 -27.63659 -26.74330 -26.00564 -23.76191 -23.27908 -22.54746 -21.57405 -21.07904 -19.81306 -19.31259 -18.32525 -17.92803 -17.41911 -16.96692 -16.86216 -16.60393 -16.52060 -16.03215 -15.98167 -15.65108 -15.28214 -14.89733 -14.61404 -14.58625 -14.24988 -13.91950 -13.60611 -13.49514 -13.34189 -13.15197 -13.02377 -13.00603 -12.85419 -12.63955 -12.52459 -12.42327 -12.32952 -12.13716 -11.77735 -11.70585 -11.34242 -11.26336 -11.11616 -10.83388 -10.76737 -10.52224 -10.24419 -10.14298 -10.03947 -8.62767 -8.33375 -6.09932 1.28771 1.43873 1.47917 1.56874 1.58958 1.68513 2.10466 2.27825 2.34662 2.84866 3.00802 3.34460 3.39027 3.53815 3.55978 3.65319 3.86262 3.91991 4.00104 4.03079 4.13362 4.20885 4.34568 4.38379 4.41768 4.53542 4.57038 4.66886 4.74654 4.77879 4.80521 4.83614 4.84624 4.94261 5.00168 5.05340 5.06257 5.18639 5.25269 5.28944 5.30355 5.40522 5.43115 5.49234 5.55528 6.20806 6.47385 6.53123 7.08454 7.19335 7.30747 8.75207 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009549 B = 0.002522 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.543657 B =11099.443960 C =13364.706931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C 0.142 3.858 4 H 0.081 0.919 5 C 0.120 3.880 6 N -0.720 5.720 7 C 0.525 3.475 8 O -0.579 6.579 9 C -0.129 4.129 10 C -0.080 4.080 11 C -0.173 4.173 12 C -0.168 4.168 13 C -0.145 4.145 14 C -0.077 4.077 15 N -0.711 5.711 16 C 0.539 3.461 17 O -0.547 6.547 18 C -0.132 4.132 19 S -0.144 6.144 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.994 3.006 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.264 1.264 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.033 0.967 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.411 0.589 36 H 0.132 0.868 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.413 0.587 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.056 -2.946 -7.117 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.037 3.963 4 H 0.099 0.901 5 C -0.004 4.004 6 N -0.372 5.372 7 C 0.312 3.688 8 O -0.459 6.459 9 C -0.150 4.150 10 C -0.117 4.117 11 C -0.173 4.173 12 C -0.205 4.205 13 C -0.182 4.182 14 C -0.114 4.114 15 N -0.366 5.366 16 C 0.325 3.675 17 O -0.424 6.424 18 C -0.284 4.284 19 S 0.083 5.917 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.816 3.184 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.189 1.189 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.247 0.753 36 H 0.150 0.850 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.250 0.750 46 H 0.121 0.879 47 H 0.128 0.872 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.146 -3.621 -8.843 25.041 hybrid contribution 0.141 0.735 2.233 2.355 sum 23.287 -2.886 -6.610 24.379 Atomic orbital electron populations 1.21734 0.96378 1.00629 1.01352 1.21860 0.95397 0.94967 1.04066 1.21252 0.93206 0.94570 0.87260 0.90099 1.21613 0.91248 0.83810 1.03697 1.46011 1.07523 1.10138 1.73510 1.20833 0.81832 0.91358 0.74731 1.90675 1.56898 1.47576 1.50713 1.22688 0.98662 0.91770 1.01902 1.22406 0.95938 0.97939 0.95452 1.22174 0.97248 0.93693 1.04217 1.22889 0.98794 1.03407 0.95377 1.22891 1.03142 0.92617 0.99512 1.22312 0.93684 0.95452 0.99970 1.45823 1.15894 1.57631 1.17203 1.19853 0.81836 0.77620 0.88184 1.90725 1.51709 1.59040 1.40948 1.23393 1.02266 1.03640 0.99054 1.85523 1.13279 1.71546 1.21345 1.23175 1.04571 1.41769 0.99940 0.90084 1.26079 0.94415 0.95998 1.02575 1.70166 1.05767 1.42044 1.36740 0.85061 0.77725 0.78589 0.76994 1.18596 1.20537 1.18856 0.93912 0.92466 0.94804 0.88847 0.90275 0.90078 0.89606 0.75328 0.85003 0.90061 0.89434 0.88291 0.88249 0.87856 0.87828 0.90357 0.90111 0.75023 0.87900 0.87247 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.52 71.98 0.61 -3.09 16 2 C -0.12 -2.22 5.61 30.60 0.17 -2.04 16 3 C 0.14 2.60 2.41 44.99 0.11 2.71 16 4 H 0.08 1.82 7.57 -2.39 -0.02 1.80 16 5 C 0.12 1.83 5.23 86.38 0.45 2.28 16 6 N -0.72 -11.24 5.39 -463.07 -2.49 -13.73 16 7 C 0.52 9.95 7.35 87.66 0.64 10.60 16 8 O -0.58 -15.27 15.90 -3.00 -0.05 -15.32 16 9 C -0.13 -1.89 4.14 -10.94 -0.05 -1.93 16 10 C -0.08 -1.10 7.66 31.04 0.24 -0.86 16 11 C -0.17 -2.36 3.09 -52.31 -0.16 -2.52 16 12 C -0.17 -2.02 10.53 30.46 0.32 -1.70 16 13 C -0.14 -1.64 10.53 30.46 0.32 -1.32 16 14 C -0.08 -1.19 7.42 30.98 0.23 -0.96 16 15 N -0.71 -14.69 4.47 -442.53 -1.98 -16.67 16 16 C 0.54 17.25 6.43 87.66 0.56 17.81 16 17 O -0.55 -22.13 13.01 -3.04 -0.04 -22.17 16 18 C -0.13 -4.80 6.16 71.24 0.44 -4.37 16 19 S -0.14 -7.63 20.57 -56.49 -1.16 -8.79 16 20 C -0.55 -30.31 9.50 67.96 0.65 -29.66 16 21 H 0.08 4.17 7.80 -2.91 -0.02 4.14 16 22 C 0.01 0.79 5.49 84.86 0.47 1.26 16 23 N -0.91 -54.95 13.22 21.65 0.29 -54.66 16 24 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 28 H 0.04 1.24 7.85 -2.39 -0.02 1.22 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.03 1.07 5.66 -2.39 -0.01 1.06 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.41 5.80 8.14 -92.71 -0.75 5.04 16 36 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.08 1.55 7.44 -2.39 -0.02 1.53 16 45 H 0.41 6.38 8.60 -92.71 -0.80 5.58 16 46 H 0.10 3.45 8.14 -2.40 -0.02 3.43 16 47 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 48 H 0.27 15.23 8.31 -92.72 -0.77 14.46 16 Total: -1.00 -75.45 406.97 1.01 -74.43 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: -0.58 Total: 25.96 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 5.01 Total: -13.80 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -4.18 Total: -85.06 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.09 Total: -37.49 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: -7.63 SS G_CDS: -1.16 Total: -8.79 kcal Total: -75.45 1.01 -74.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704681427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.505 kcal (2) G-P(sol) polarization free energy of solvation -75.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds