Wall clock time and date at job start Sat Apr 11 2020 06:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46986 * 2 1 4 4 H 1.08997 * 109.47347 * 55.00313 * 3 2 1 5 5 C 1.53004 * 109.47159 * 175.00058 * 3 2 1 6 6 N 1.46495 * 109.47598 * 174.99859 * 5 3 2 7 7 C 1.34773 * 120.00391 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00024 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00157 * 179.97438 * 7 6 5 10 10 C 1.53890 * 113.58717 * 80.78618 * 9 7 6 11 11 C 1.53419 * 86.82533 * 89.71308 * 10 9 7 12 12 C 1.52460 * 128.60798 * 165.09850 * 11 10 9 13 13 C 1.52458 * 128.52230 * 245.01375 * 11 10 9 14 14 C 1.53255 * 87.71922 * 25.01939 * 11 10 9 15 15 N 1.46498 * 109.47334 * 294.99750 * 3 2 1 16 16 C 1.34780 * 119.99470 * 85.00506 * 15 3 2 17 17 O 1.21281 * 120.00320 * 359.97438 * 16 15 3 18 18 C 1.50707 * 119.99729 * 180.02562 * 16 15 3 19 19 S 1.80997 * 109.47015 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99827 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99926 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99716 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00602 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99823 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46908 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46862 * 120.00160 * 24 22 20 27 27 H 1.48497 * 109.47225 * 239.99781 * 24 22 20 28 28 H 1.08996 * 109.47138 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46766 * 300.00035 * 1 2 3 30 30 H 1.09002 * 109.47089 * 59.99820 * 1 2 3 31 31 H 1.09002 * 109.47139 * 240.00284 * 2 1 3 32 32 H 1.09002 * 109.47089 * 120.00180 * 2 1 3 33 33 H 1.09001 * 109.46968 * 54.99972 * 5 3 2 34 34 H 1.09005 * 109.47145 * 295.00280 * 5 3 2 35 35 H 0.97003 * 119.99845 * 359.97438 * 6 5 3 36 36 H 1.09002 * 112.83084 * 309.67042 * 9 7 6 37 37 H 1.08994 * 113.64879 * 204.18465 * 10 9 7 38 38 H 1.09008 * 113.64580 * 335.19169 * 10 9 7 39 39 H 1.09004 * 117.51535 * 224.95986 * 12 11 10 40 40 H 1.09001 * 117.51386 * 10.06078 * 12 11 10 41 41 H 1.09003 * 117.51324 * 349.80955 * 13 11 10 42 42 H 1.09003 * 117.51283 * 134.86315 * 13 11 10 43 43 H 1.09009 * 113.64453 * 220.48821 * 14 11 10 44 44 H 1.08997 * 113.72782 * 89.49596 * 14 11 10 45 45 H 0.96995 * 120.00325 * 265.00656 * 15 3 2 46 46 H 1.08999 * 109.46785 * 299.99724 * 18 16 15 47 47 H 1.08999 * 109.47182 * 59.99399 * 18 16 15 48 48 H 0.96995 * 120.00799 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0631 2.8168 0.0059 7 6 5.3857 3.0630 0.0868 8 8 6.1634 2.1484 0.2583 9 6 5.8982 4.4748 -0.0370 10 6 5.7816 5.2885 1.2639 11 6 7.1813 4.7673 1.6149 12 6 8.1453 5.2742 2.6817 13 6 7.5928 3.8483 2.7595 14 6 7.4254 4.5908 0.1122 15 7 1.6525 2.0975 -1.2518 16 6 0.4351 2.6645 -1.3669 17 8 -0.3396 2.6320 -0.4343 18 6 0.0362 3.3378 -2.6548 19 16 -1.6427 3.9954 -2.4969 20 6 -1.8443 4.7066 -4.0963 21 1 -1.0441 4.6457 -4.8192 22 6 -3.0314 5.3451 -4.4273 23 7 -4.0069 5.4190 -3.5465 24 14 -3.2454 6.0985 -6.1232 25 1 -2.0123 5.8799 -6.9211 26 1 -4.3974 5.4581 -6.8075 27 1 -3.4972 7.5559 -5.9893 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9954 0.8312 -0.6659 34 1 3.8499 1.0377 1.0960 35 1 3.4411 3.5483 -0.1316 36 1 5.5049 4.9923 -0.9120 37 1 5.7438 6.3660 1.1037 38 1 5.0002 4.9311 1.9347 39 1 9.1912 5.3942 2.3992 40 1 7.7652 6.0013 3.3993 41 1 6.8493 3.6375 3.5283 42 1 8.2748 3.0300 2.5280 43 1 7.9601 3.6747 -0.1391 44 1 7.8462 5.4729 -0.3704 45 1 2.2719 2.1231 -1.9978 46 1 0.7276 4.1530 -2.8678 47 1 0.0673 2.6131 -3.4684 48 1 -4.8363 5.8655 -3.7776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704681428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:41 Heat of formation + Delta-G solvation = -36.413819 kcal Electronic energy + Delta-G solvation = -27037.919790 eV Core-core repulsion = 23220.298286 eV Total energy + Delta-G solvation = -3817.621504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.90129 -39.77052 -38.42281 -36.43767 -34.11127 -33.81303 -32.47916 -32.44219 -29.55397 -28.36294 -26.10518 -25.54211 -25.11299 -22.96635 -22.61223 -21.51575 -20.54607 -20.39269 -18.79648 -17.87214 -17.18499 -16.71064 -16.47735 -15.92695 -15.83765 -15.48710 -15.23862 -14.98184 -14.84167 -14.50771 -14.22928 -13.62838 -13.47680 -13.33735 -13.14736 -12.94519 -12.73497 -12.54402 -12.33705 -12.15723 -11.91613 -11.76701 -11.74551 -11.48092 -11.22643 -11.10420 -11.05390 -10.82108 -10.77187 -10.63974 -10.36702 -10.18788 -9.84524 -9.83962 -9.46953 -9.31032 -9.11573 -8.93984 -8.28265 -6.54444 -6.25977 -3.96580 2.39709 2.82022 2.97421 3.03669 3.18510 3.25370 3.29560 3.47713 3.65246 4.02732 4.16403 4.23193 4.28850 4.38268 4.48089 4.58736 4.73694 4.86581 4.99605 5.09346 5.09807 5.16051 5.22721 5.33250 5.36368 5.36827 5.40639 5.42809 5.49503 5.57048 5.60031 5.73289 5.76167 5.81541 5.86024 5.86293 5.86862 5.90735 6.02526 6.08429 6.15993 6.21268 6.54197 6.60706 7.24812 7.55875 7.61541 7.99973 8.31276 8.53745 9.19828 10.81387 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.002374 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.339178 B =11790.886629 C =13360.789502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.135 3.865 4 H 0.095 0.905 5 C 0.114 3.886 6 N -0.728 5.728 7 C 0.534 3.466 8 O -0.535 6.535 9 C -0.137 4.137 10 C -0.084 4.084 11 C -0.161 4.161 12 C -0.169 4.169 13 C -0.142 4.142 14 C -0.080 4.080 15 N -0.736 5.736 16 C 0.533 3.467 17 O -0.508 6.508 18 C -0.155 4.155 19 S -0.058 6.058 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.405 0.595 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.398 0.602 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.164 -4.256 9.011 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.113 0.887 5 C -0.010 4.010 6 N -0.380 5.380 7 C 0.320 3.680 8 O -0.412 6.412 9 C -0.158 4.158 10 C -0.122 4.122 11 C -0.161 4.161 12 C -0.206 4.206 13 C -0.179 4.179 14 C -0.117 4.117 15 N -0.391 5.391 16 C 0.319 3.681 17 O -0.382 6.382 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.240 0.760 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.232 0.768 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 21.232 -4.926 10.744 24.300 hybrid contribution 0.641 0.860 -2.654 2.862 sum 21.872 -4.066 8.091 23.673 Atomic orbital electron populations 1.21805 0.93990 1.00730 1.03851 1.21879 0.97814 0.94974 1.02175 1.21240 0.92360 0.94697 0.88763 0.88672 1.21668 0.92744 0.83571 1.03060 1.45966 1.07626 1.09920 1.74497 1.20027 0.81908 0.90384 0.75644 1.90680 1.55939 1.46201 1.48350 1.22297 0.99095 0.93682 1.00774 1.22468 0.95252 0.99730 0.94719 1.22217 0.96636 1.05267 0.91937 1.22822 0.98744 0.97480 1.01541 1.22696 1.02918 0.93498 0.98784 1.22352 0.93657 1.02779 0.92955 1.46122 1.17443 1.59462 1.16112 1.20266 0.80776 0.77475 0.89594 1.90722 1.50238 1.57145 1.40063 1.23547 1.07065 1.02821 0.97111 1.85384 1.06368 1.70897 1.20522 1.22901 1.03943 1.42014 0.99504 0.90919 1.24992 0.94848 0.95567 0.98177 1.70018 1.05012 1.41009 1.34213 0.86126 0.78305 0.78789 0.82335 1.19627 1.20560 1.20550 0.93580 0.92012 0.91729 0.91715 0.91209 0.90869 0.90145 0.75955 0.87718 0.88472 0.90951 0.88774 0.88791 0.88958 0.88495 0.89927 0.89029 0.76795 0.89347 0.89336 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.51 37.16 0.32 -1.61 16 2 C -0.13 -1.30 5.61 -26.73 -0.15 -1.45 16 3 C 0.13 1.36 2.42 -67.93 -0.16 1.20 16 4 H 0.10 1.12 7.58 -51.93 -0.39 0.73 16 5 C 0.11 1.00 5.23 -4.04 -0.02 0.98 16 6 N -0.73 -6.44 5.39 -60.29 -0.32 -6.77 16 7 C 0.53 5.48 7.08 -10.99 -0.08 5.40 16 8 O -0.54 -7.21 15.83 5.56 0.09 -7.12 16 9 C -0.14 -1.11 4.33 -90.85 -0.39 -1.50 16 10 C -0.08 -0.63 7.69 -26.05 -0.20 -0.83 16 11 C -0.16 -1.34 2.77 -154.72 -0.43 -1.77 16 12 C -0.17 -1.24 10.53 -26.95 -0.28 -1.52 16 13 C -0.14 -1.23 10.53 -26.95 -0.28 -1.51 16 14 C -0.08 -0.65 7.48 -26.14 -0.20 -0.85 16 15 N -0.74 -8.33 4.47 -53.80 -0.24 -8.57 16 16 C 0.53 8.70 6.42 -10.98 -0.07 8.63 16 17 O -0.51 -10.09 13.00 5.56 0.07 -10.02 16 18 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 19 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 20 C -0.54 -14.82 9.50 30.94 0.29 -14.52 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 23 N -0.87 -25.63 13.22 55.49 0.73 -24.90 16 24 Si 0.92 21.01 29.55 -169.99 -5.02 15.98 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.88 7.85 -51.93 -0.41 0.48 16 30 H 0.06 1.03 5.64 -51.93 -0.29 0.74 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.41 3.34 8.14 -40.82 -0.33 3.00 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.58 8.09 -51.92 -0.42 0.16 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 0.81 7.40 -51.92 -0.38 0.42 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.40 3.68 8.60 -40.82 -0.35 3.33 16 46 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 47 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 48 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 406.51 15.07 6.13 6.13 Total: -1.00 -33.70 406.51 -10.36 -44.06 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -8.04 Total: 4.97 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -1.53 Total: -10.05 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.17 Total: -40.23 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.16 Total: -17.14 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.70 -10.36 -44.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704681428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.649 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds