Wall clock time and date at job start Sat Apr 11 2020 06:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46986 * 2 1 4 4 H 1.08997 * 109.47347 * 55.00313 * 3 2 1 5 5 C 1.53004 * 109.47159 * 175.00058 * 3 2 1 6 6 N 1.46495 * 109.47598 * 174.99859 * 5 3 2 7 7 C 1.34773 * 120.00391 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00024 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00157 * 179.97438 * 7 6 5 10 10 C 1.53890 * 113.58717 * 80.78618 * 9 7 6 11 11 C 1.53419 * 86.82533 * 89.71308 * 10 9 7 12 12 C 1.52460 * 128.60798 * 165.09850 * 11 10 9 13 13 C 1.52458 * 128.52230 * 245.01375 * 11 10 9 14 14 C 1.53255 * 87.71922 * 25.01939 * 11 10 9 15 15 N 1.46498 * 109.47334 * 294.99750 * 3 2 1 16 16 C 1.34780 * 119.99470 * 85.00506 * 15 3 2 17 17 O 1.21281 * 120.00320 * 359.97438 * 16 15 3 18 18 C 1.50707 * 119.99729 * 180.02562 * 16 15 3 19 19 S 1.80997 * 109.47015 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99827 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99926 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99716 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00602 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99823 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46908 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46862 * 120.00160 * 24 22 20 27 27 H 1.48497 * 109.47225 * 239.99781 * 24 22 20 28 28 H 1.08996 * 109.47138 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46766 * 300.00035 * 1 2 3 30 30 H 1.09002 * 109.47089 * 59.99820 * 1 2 3 31 31 H 1.09002 * 109.47139 * 240.00284 * 2 1 3 32 32 H 1.09002 * 109.47089 * 120.00180 * 2 1 3 33 33 H 1.09001 * 109.46968 * 54.99972 * 5 3 2 34 34 H 1.09005 * 109.47145 * 295.00280 * 5 3 2 35 35 H 0.97003 * 119.99845 * 359.97438 * 6 5 3 36 36 H 1.09002 * 112.83084 * 309.67042 * 9 7 6 37 37 H 1.08994 * 113.64879 * 204.18465 * 10 9 7 38 38 H 1.09008 * 113.64580 * 335.19169 * 10 9 7 39 39 H 1.09004 * 117.51535 * 224.95986 * 12 11 10 40 40 H 1.09001 * 117.51386 * 10.06078 * 12 11 10 41 41 H 1.09003 * 117.51324 * 349.80955 * 13 11 10 42 42 H 1.09003 * 117.51283 * 134.86315 * 13 11 10 43 43 H 1.09009 * 113.64453 * 220.48821 * 14 11 10 44 44 H 1.08997 * 113.72782 * 89.49596 * 14 11 10 45 45 H 0.96995 * 120.00325 * 265.00656 * 15 3 2 46 46 H 1.08999 * 109.46785 * 299.99724 * 18 16 15 47 47 H 1.08999 * 109.47182 * 59.99399 * 18 16 15 48 48 H 0.96995 * 120.00799 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0631 2.8168 0.0059 7 6 5.3857 3.0630 0.0868 8 8 6.1634 2.1484 0.2583 9 6 5.8982 4.4748 -0.0370 10 6 5.7816 5.2885 1.2639 11 6 7.1813 4.7673 1.6149 12 6 8.1453 5.2742 2.6817 13 6 7.5928 3.8483 2.7595 14 6 7.4254 4.5908 0.1122 15 7 1.6525 2.0975 -1.2518 16 6 0.4351 2.6645 -1.3669 17 8 -0.3396 2.6320 -0.4343 18 6 0.0362 3.3378 -2.6548 19 16 -1.6427 3.9954 -2.4969 20 6 -1.8443 4.7066 -4.0963 21 1 -1.0441 4.6457 -4.8192 22 6 -3.0314 5.3451 -4.4273 23 7 -4.0069 5.4190 -3.5465 24 14 -3.2454 6.0985 -6.1232 25 1 -2.0123 5.8799 -6.9211 26 1 -4.3974 5.4581 -6.8075 27 1 -3.4972 7.5559 -5.9893 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9954 0.8312 -0.6659 34 1 3.8499 1.0377 1.0960 35 1 3.4411 3.5483 -0.1316 36 1 5.5049 4.9923 -0.9120 37 1 5.7438 6.3660 1.1037 38 1 5.0002 4.9311 1.9347 39 1 9.1912 5.3942 2.3992 40 1 7.7652 6.0013 3.3993 41 1 6.8493 3.6375 3.5283 42 1 8.2748 3.0300 2.5280 43 1 7.9601 3.6747 -0.1391 44 1 7.8462 5.4729 -0.3704 45 1 2.2719 2.1231 -1.9978 46 1 0.7276 4.1530 -2.8678 47 1 0.0673 2.6131 -3.4684 48 1 -4.8363 5.8655 -3.7776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704681428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:41 Heat of formation + Delta-G solvation = -58.377836 kcal Electronic energy + Delta-G solvation = -27038.872221 eV Core-core repulsion = 23220.298286 eV Total energy + Delta-G solvation = -3818.573935 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64609 -40.90953 -39.21488 -37.48388 -34.97255 -34.57035 -34.48638 -33.59219 -30.78582 -29.45949 -27.64063 -26.70317 -25.92505 -23.76111 -23.23080 -22.54930 -21.58200 -21.28324 -19.85821 -19.40231 -17.96141 -17.93026 -17.42289 -16.94247 -16.86611 -16.62407 -16.49504 -16.06546 -15.96293 -15.67280 -15.27833 -14.89632 -14.61446 -14.59250 -14.23406 -14.03654 -13.67217 -13.49316 -13.32431 -13.14084 -12.98680 -12.89249 -12.79133 -12.61716 -12.52764 -12.45717 -12.36262 -12.14043 -11.78021 -11.67473 -11.26441 -11.14669 -11.04681 -10.88359 -10.83225 -10.52006 -10.23517 -10.12215 -10.03897 -8.62648 -8.33758 -6.10042 1.29073 1.41374 1.48512 1.58794 1.61974 1.68607 2.09936 2.27378 2.34737 2.86460 3.00644 3.34454 3.42238 3.55414 3.61423 3.66080 3.81339 3.97908 3.99544 4.02570 4.09787 4.15198 4.34805 4.39726 4.53060 4.56752 4.59103 4.65973 4.76057 4.77213 4.80156 4.84160 4.89106 4.94211 4.97868 5.05862 5.11071 5.18355 5.24266 5.26065 5.30895 5.39606 5.43701 5.48901 5.55387 6.21212 6.49429 6.53407 7.08426 7.22954 7.30857 8.75290 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.002374 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.339178 B =11790.886629 C =13360.789502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C 0.143 3.857 4 H 0.080 0.920 5 C 0.123 3.877 6 N -0.721 5.721 7 C 0.532 3.468 8 O -0.571 6.571 9 C -0.137 4.137 10 C -0.078 4.078 11 C -0.172 4.172 12 C -0.156 4.156 13 C -0.159 4.159 14 C -0.079 4.079 15 N -0.710 5.710 16 C 0.539 3.461 17 O -0.547 6.547 18 C -0.132 4.132 19 S -0.145 6.145 20 C -0.544 4.544 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.995 3.005 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.274 1.274 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.410 0.590 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.111 0.889 45 H 0.413 0.587 46 H 0.110 0.890 47 H 0.103 0.897 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.139 -3.821 7.733 25.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.038 3.962 4 H 0.098 0.902 5 C -0.001 4.001 6 N -0.373 5.373 7 C 0.320 3.680 8 O -0.450 6.450 9 C -0.158 4.158 10 C -0.116 4.116 11 C -0.172 4.172 12 C -0.193 4.193 13 C -0.196 4.196 14 C -0.117 4.117 15 N -0.365 5.365 16 C 0.325 3.675 17 O -0.424 6.424 18 C -0.283 4.283 19 S 0.082 5.918 20 C -0.692 4.692 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.199 1.199 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.246 0.754 36 H 0.143 0.857 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.080 0.920 44 H 0.129 0.871 45 H 0.250 0.750 46 H 0.128 0.872 47 H 0.121 0.879 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.244 -4.502 9.456 25.495 hybrid contribution 0.113 0.629 -2.183 2.275 sum 23.357 -3.873 7.272 24.768 Atomic orbital electron populations 1.21735 0.96355 1.00628 1.01367 1.21860 0.95414 0.94981 1.04042 1.21242 0.93198 0.94537 0.87263 0.90163 1.21579 0.91215 0.83755 1.03574 1.45940 1.07437 1.10104 1.73850 1.20418 0.81837 0.90977 0.74807 1.90670 1.56788 1.47438 1.50084 1.22324 0.99035 0.92484 1.01921 1.22496 0.94412 1.00615 0.94052 1.22363 0.97537 1.05230 0.92085 1.22877 0.99011 0.96411 1.00986 1.22680 1.03288 0.94126 0.99467 1.22390 0.93613 1.02655 0.93010 1.45819 1.15760 1.57781 1.17174 1.19856 0.81832 0.77588 0.88212 1.90725 1.51797 1.58877 1.41023 1.23391 1.02236 1.03701 0.99005 1.85531 1.13039 1.71934 1.21248 1.23234 1.04387 1.41834 0.99773 0.90086 1.26080 0.94443 0.96007 1.02593 1.70177 1.05698 1.42201 1.36663 0.84954 0.78689 0.77764 0.76857 1.18087 1.20156 1.19944 0.92474 0.93929 0.94763 0.90268 0.88906 0.90115 0.89790 0.75390 0.85674 0.86648 0.91586 0.88041 0.87851 0.89265 0.89604 0.91958 0.87052 0.75015 0.87224 0.87897 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 8.51 71.98 0.61 -3.10 16 2 C -0.12 -2.24 5.61 30.59 0.17 -2.06 16 3 C 0.14 2.62 2.42 44.99 0.11 2.73 16 4 H 0.08 1.82 7.58 -2.39 -0.02 1.80 16 5 C 0.12 1.89 5.23 86.38 0.45 2.34 16 6 N -0.72 -11.34 5.39 -463.06 -2.49 -13.83 16 7 C 0.53 10.11 7.08 87.66 0.62 10.73 16 8 O -0.57 -14.91 15.83 -3.03 -0.05 -14.96 16 9 C -0.14 -1.92 4.33 -10.94 -0.05 -1.97 16 10 C -0.08 -1.02 7.69 31.04 0.24 -0.78 16 11 C -0.17 -2.64 2.77 -52.32 -0.15 -2.79 16 12 C -0.16 -2.06 10.53 30.45 0.32 -1.74 16 13 C -0.16 -2.70 10.53 30.45 0.32 -2.38 16 14 C -0.08 -1.17 7.48 30.98 0.23 -0.94 16 15 N -0.71 -14.70 4.47 -442.52 -1.98 -16.68 16 16 C 0.54 17.24 6.42 87.66 0.56 17.80 16 17 O -0.55 -22.13 13.00 -3.03 -0.04 -22.17 16 18 C -0.13 -4.79 6.16 71.24 0.44 -4.35 16 19 S -0.14 -7.65 20.57 -56.49 -1.16 -8.81 16 20 C -0.54 -30.15 9.50 67.95 0.65 -29.51 16 21 H 0.08 4.18 7.80 -2.91 -0.02 4.16 16 22 C 0.01 0.75 5.49 84.86 0.47 1.22 16 23 N -0.91 -54.88 13.22 21.65 0.29 -54.60 16 24 Si 1.00 42.76 29.55 68.60 2.03 44.79 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 26 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 1.24 7.85 -2.38 -0.02 1.22 16 30 H 0.03 1.09 5.64 -2.39 -0.01 1.07 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.32 8.14 -2.38 -0.02 1.31 16 35 H 0.41 5.83 8.14 -92.71 -0.75 5.08 16 36 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 0.95 8.09 -2.38 -0.02 0.93 16 39 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.19 7.40 -2.38 -0.02 1.17 16 44 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.41 6.38 8.60 -92.71 -0.80 5.58 16 46 H 0.11 3.52 8.14 -2.40 -0.02 3.50 16 47 H 0.10 3.45 8.14 -2.40 -0.02 3.43 16 48 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -75.83 406.51 1.01 -74.82 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: -0.58 Total: 26.24 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 5.00 Total: -14.80 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -4.19 Total: -85.11 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.09 Total: -37.13 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: -7.65 SS G_CDS: -1.16 Total: -8.81 kcal Total: -75.83 1.01 -74.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704681428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.447 kcal (2) G-P(sol) polarization free energy of solvation -75.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds