Wall clock time and date at job start Sat Apr 11 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46778 * 2 1 4 4 N 1.46506 * 109.47122 * 300.00025 * 3 2 1 5 5 C 1.34776 * 119.99949 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00142 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99608 * 179.97438 * 5 4 3 8 8 C 1.53787 * 113.61071 * 180.02562 * 7 5 4 9 9 C 1.53789 * 87.16988 * 220.06390 * 8 7 5 10 10 C 1.53782 * 87.08115 * 25.38802 * 9 8 7 11 11 N 1.46498 * 109.47314 * 240.00064 * 2 1 3 12 12 C 1.34776 * 119.99989 * 173.95978 * 11 2 1 13 13 O 1.21281 * 120.00171 * 5.26817 * 12 11 2 14 14 C 1.50704 * 119.99924 * 185.26906 * 12 11 2 15 15 S 1.80994 * 109.46921 * 179.97438 * 14 12 11 16 16 C 1.76202 * 99.99935 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99751 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00032 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99969 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 120.00184 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.46641 * 89.99675 * 20 18 16 22 22 H 1.48498 * 109.46994 * 210.00209 * 20 18 16 23 23 H 1.48497 * 109.46767 * 330.00116 * 20 18 16 24 24 C 1.53002 * 109.47330 * 119.99371 * 2 1 3 25 25 C 1.53001 * 117.49421 * 123.08366 * 24 2 1 26 26 C 1.52999 * 117.49436 * 54.46534 * 24 2 1 27 27 H 1.09000 * 109.47379 * 60.00396 * 1 2 3 28 28 H 1.09008 * 109.46698 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47406 * 299.99522 * 1 2 3 30 30 H 1.08999 * 109.47286 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47348 * 59.99649 * 3 2 1 32 32 H 0.96998 * 119.99681 * 359.97438 * 4 3 2 33 33 H 1.08998 * 112.91209 * 311.25149 * 7 5 4 34 34 H 1.08994 * 113.61274 * 105.47421 * 8 7 5 35 35 H 1.08998 * 113.61498 * 334.64816 * 8 7 5 36 36 H 1.08995 * 113.61159 * 139.93758 * 9 8 7 37 37 H 1.08999 * 113.61145 * 270.84048 * 9 8 7 38 38 H 1.09002 * 113.61571 * 89.11825 * 10 9 8 39 39 H 1.08997 * 113.61447 * 219.93177 * 10 9 8 40 40 H 0.96995 * 119.99811 * 353.95898 * 11 2 1 41 41 H 1.08993 * 109.46786 * 299.99696 * 14 12 11 42 42 H 1.08992 * 109.47177 * 59.99693 * 14 12 11 43 43 H 0.96999 * 119.99851 * 179.97438 * 19 18 16 44 44 H 1.08997 * 115.55206 * 268.79630 * 24 2 1 45 45 H 1.08995 * 117.50205 * 0.02562 * 25 24 2 46 46 H 1.09001 * 117.49931 * 145.02798 * 25 24 2 47 47 H 1.08999 * 117.49740 * 214.97664 * 26 24 2 48 48 H 1.09006 * 117.49946 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5515 2.1332 -1.1962 5 6 1.8766 3.4237 -1.4092 6 8 2.5738 4.0131 -0.6109 7 6 1.3746 4.1338 -2.6400 8 6 1.8334 5.5985 -2.7362 9 6 0.4227 5.9267 -3.2531 10 6 -0.0593 4.6762 -2.4989 11 7 2.0183 -0.6906 -1.1961 12 6 3.3373 -0.7084 -1.4727 13 8 4.1287 -0.2365 -0.6841 14 6 3.8288 -1.3147 -2.7619 15 16 5.6325 -1.1865 -2.8397 16 6 5.9264 -1.9494 -4.4006 17 1 5.0974 -2.3216 -4.9843 18 6 7.2231 -2.0712 -4.8804 19 7 7.4426 -2.6407 -6.0467 20 14 8.6569 -1.4268 -3.8711 21 1 9.1528 -2.5011 -2.9738 22 1 9.7494 -0.9978 -4.7808 23 1 8.2080 -0.2693 -3.0563 24 6 2.0400 -0.7211 1.2493 25 6 2.9740 -1.9154 1.0437 26 6 1.5318 -2.1420 1.5017 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.1299 1.4427 0.0005 31 1 1.6765 1.9564 0.8899 32 1 0.9942 1.6616 -1.8349 33 1 1.5383 3.5644 -3.5549 34 1 2.6181 5.7626 -3.4746 35 1 2.0601 6.0494 -1.7701 36 1 0.0184 6.8582 -2.8572 37 1 0.3252 5.8481 -4.3359 38 1 -0.3504 4.8736 -1.4672 39 1 -0.8035 4.0966 -3.0451 40 1 1.3924 -1.1350 -1.7891 41 1 3.5366 -2.3639 -2.8044 42 1 3.3902 -0.7809 -3.6048 43 1 8.3488 -2.7254 -6.3821 44 1 2.2162 -0.0878 2.1187 45 1 3.2253 -2.1872 0.0185 46 1 3.7650 -2.0680 1.7779 47 1 1.3741 -2.4436 2.5372 48 1 0.8338 -2.5629 0.7779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704707624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:45 Heat of formation + Delta-G solvation = -24.581349 kcal Electronic energy + Delta-G solvation = -28224.504032 eV Core-core repulsion = 24407.395622 eV Total energy + Delta-G solvation = -3817.108409 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.89201 -40.03065 -37.66420 -37.21322 -35.24675 -33.50311 -32.45742 -31.37377 -28.81831 -27.93817 -26.10696 -25.81091 -25.61922 -23.09036 -22.25033 -21.25852 -20.76804 -19.74217 -19.24563 -17.92041 -17.74917 -16.53668 -16.50468 -16.17339 -15.67779 -15.48674 -15.03023 -14.81556 -14.73104 -14.38717 -13.96611 -13.84497 -13.44755 -13.13122 -12.88099 -12.83089 -12.74138 -12.70646 -12.68049 -12.26307 -12.06495 -11.68324 -11.43713 -11.37195 -11.27878 -11.20675 -11.02025 -10.77819 -10.63144 -10.62345 -10.40290 -10.18936 -9.86410 -9.71161 -9.44947 -9.09572 -9.01449 -8.88856 -8.51556 -6.93290 -6.30987 -4.02583 2.62016 2.70945 2.91957 3.11060 3.26102 3.32293 3.50058 3.59620 3.79827 4.28750 4.31606 4.35180 4.47378 4.49036 4.57656 4.60434 4.61193 4.74238 4.98954 5.00952 5.08389 5.11190 5.18598 5.21453 5.32493 5.40550 5.45943 5.49596 5.52778 5.56670 5.59705 5.61844 5.70445 5.75148 5.77162 5.87779 5.94031 5.97926 6.08069 6.11767 6.18289 6.23816 6.39183 6.56122 7.45326 7.55787 7.92004 8.23514 8.38981 8.46844 9.15453 10.78251 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008731 B = 0.003802 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.117685 B = 7362.450181 C = 9619.580419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.200 3.800 3 C 0.107 3.893 4 N -0.722 5.722 5 C 0.522 3.478 6 O -0.539 6.539 7 C -0.140 4.140 8 C -0.118 4.118 9 C -0.142 4.142 10 C -0.122 4.122 11 N -0.735 5.735 12 C 0.533 3.467 13 O -0.500 6.500 14 C -0.126 4.126 15 S -0.137 6.137 16 C -0.523 4.523 17 H 0.087 0.913 18 C 0.097 3.903 19 N -0.880 5.880 20 Si 0.855 3.145 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.155 4.155 25 C -0.150 4.150 26 C -0.181 4.181 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.396 0.604 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.399 0.601 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.271 0.729 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.986 8.596 9.865 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.113 3.887 3 C -0.017 4.017 4 N -0.374 5.374 5 C 0.309 3.691 6 O -0.415 6.415 7 C -0.161 4.161 8 C -0.156 4.156 9 C -0.179 4.179 10 C -0.160 4.160 11 N -0.390 5.390 12 C 0.319 3.681 13 O -0.373 6.373 14 C -0.277 4.277 15 S 0.090 5.910 16 C -0.670 4.670 17 H 0.105 0.895 18 C -0.112 4.112 19 N -0.517 5.517 20 Si 0.680 3.320 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.174 4.174 25 C -0.187 4.187 26 C -0.218 4.218 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.231 0.769 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.233 0.767 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.127 0.873 45 H 0.117 0.883 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.008 9.773 11.622 24.329 hybrid contribution -0.677 -1.079 -1.388 1.884 sum -19.686 8.695 10.234 23.830 Atomic orbital electron populations 1.22053 0.92892 1.03011 1.02978 1.19928 0.93568 0.90580 0.84615 1.21820 1.02620 0.89762 0.87510 1.45901 1.53824 1.12015 1.25611 1.20461 0.79776 0.81500 0.87414 1.90693 1.37383 1.66220 1.47229 1.22834 0.98527 0.97503 0.97248 1.22795 0.96916 0.93176 1.02716 1.22830 0.96850 0.97977 1.00288 1.22836 0.94299 0.97457 1.01417 1.46193 1.08061 1.58047 1.26716 1.20132 0.81682 0.78729 0.87528 1.90708 1.54257 1.44095 1.48222 1.23312 1.03408 1.03768 0.97212 1.84840 0.98002 1.79677 1.28523 1.22317 0.97276 1.44303 1.03126 0.89479 1.24701 0.98312 0.93682 0.94503 1.69937 1.22018 1.41756 1.17981 0.86753 0.82543 0.81686 0.81000 1.19199 1.19920 1.15907 1.22402 1.05762 0.90816 0.98470 1.22997 0.92289 1.00307 1.03120 1.22980 0.98567 0.98416 1.01844 0.92023 0.91344 0.90585 0.88177 0.91209 0.76938 0.86907 0.90877 0.88768 0.91072 0.89841 0.89844 0.90785 0.76723 0.88787 0.88719 0.91932 0.87342 0.88284 0.89060 0.89148 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.19 37.16 0.30 -0.67 16 2 C 0.20 1.95 0.55 -131.82 -0.07 1.88 16 3 C 0.11 1.33 4.24 -4.04 -0.02 1.31 16 4 N -0.72 -7.97 5.13 -60.29 -0.31 -8.28 16 5 C 0.52 6.87 7.36 -10.99 -0.08 6.79 16 6 O -0.54 -9.42 15.90 5.56 0.09 -9.33 16 7 C -0.14 -1.38 4.16 -90.87 -0.38 -1.75 16 8 C -0.12 -1.18 7.40 -25.91 -0.19 -1.37 16 9 C -0.14 -1.04 8.09 -25.91 -0.21 -1.25 16 10 C -0.12 -0.91 7.64 -25.83 -0.20 -1.10 16 11 N -0.73 -7.84 4.19 -47.61 -0.20 -8.04 16 12 C 0.53 8.44 5.11 -10.98 -0.06 8.38 16 13 O -0.50 -9.71 11.78 5.56 0.07 -9.64 16 14 C -0.13 -2.30 6.16 36.01 0.22 -2.08 16 15 S -0.14 -3.38 18.55 -107.50 -1.99 -5.37 16 16 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 17 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 18 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 19 N -0.88 -26.42 13.97 55.49 0.78 -25.65 16 20 Si 0.86 21.80 27.74 -169.99 -4.72 17.08 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 24 C -0.15 -1.67 4.83 -90.62 -0.44 -2.11 16 25 C -0.15 -1.92 8.30 -26.73 -0.22 -2.15 16 26 C -0.18 -1.71 9.68 -26.73 -0.26 -1.97 16 27 H 0.06 0.33 6.86 -51.93 -0.36 -0.03 16 28 H 0.07 0.39 6.96 -51.92 -0.36 0.03 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 1.70 5.93 -51.93 -0.31 1.40 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.40 3.34 7.15 -40.82 -0.29 3.05 16 33 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.09 7.43 -51.93 -0.39 0.70 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.40 3.15 8.49 -40.82 -0.35 2.81 16 41 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.11 1.16 8.07 -51.93 -0.42 0.74 16 45 H 0.10 1.47 5.09 -51.93 -0.26 1.20 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.09 0.77 7.26 -51.93 -0.38 0.39 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -35.09 392.67 -9.51 -44.59 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.76 Total: 6.63 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.38 Total: -7.91 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.27 Total: -41.97 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.15 Total: -18.97 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.72 Total: 17.08 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.37 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.09 -9.51 -44.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704707624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.013 kcal (2) G-P(sol) polarization free energy of solvation -35.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds