Wall clock time and date at job start Sat Apr 11 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46778 * 2 1 4 4 N 1.46506 * 109.47122 * 300.00025 * 3 2 1 5 5 C 1.34776 * 119.99949 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00142 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99608 * 179.97438 * 5 4 3 8 8 C 1.53787 * 113.61071 * 180.02562 * 7 5 4 9 9 C 1.53789 * 87.16988 * 220.06390 * 8 7 5 10 10 C 1.53782 * 87.08115 * 25.38802 * 9 8 7 11 11 N 1.46498 * 109.47314 * 240.00064 * 2 1 3 12 12 C 1.34776 * 119.99989 * 173.95978 * 11 2 1 13 13 O 1.21281 * 120.00171 * 5.26817 * 12 11 2 14 14 C 1.50704 * 119.99924 * 185.26906 * 12 11 2 15 15 S 1.80994 * 109.46921 * 179.97438 * 14 12 11 16 16 C 1.76202 * 99.99935 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99751 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00032 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99969 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 120.00184 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.46641 * 89.99675 * 20 18 16 22 22 H 1.48498 * 109.46994 * 210.00209 * 20 18 16 23 23 H 1.48497 * 109.46767 * 330.00116 * 20 18 16 24 24 C 1.53002 * 109.47330 * 119.99371 * 2 1 3 25 25 C 1.53001 * 117.49421 * 123.08366 * 24 2 1 26 26 C 1.52999 * 117.49436 * 54.46534 * 24 2 1 27 27 H 1.09000 * 109.47379 * 60.00396 * 1 2 3 28 28 H 1.09008 * 109.46698 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47406 * 299.99522 * 1 2 3 30 30 H 1.08999 * 109.47286 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47348 * 59.99649 * 3 2 1 32 32 H 0.96998 * 119.99681 * 359.97438 * 4 3 2 33 33 H 1.08998 * 112.91209 * 311.25149 * 7 5 4 34 34 H 1.08994 * 113.61274 * 105.47421 * 8 7 5 35 35 H 1.08998 * 113.61498 * 334.64816 * 8 7 5 36 36 H 1.08995 * 113.61159 * 139.93758 * 9 8 7 37 37 H 1.08999 * 113.61145 * 270.84048 * 9 8 7 38 38 H 1.09002 * 113.61571 * 89.11825 * 10 9 8 39 39 H 1.08997 * 113.61447 * 219.93177 * 10 9 8 40 40 H 0.96995 * 119.99811 * 353.95898 * 11 2 1 41 41 H 1.08993 * 109.46786 * 299.99696 * 14 12 11 42 42 H 1.08992 * 109.47177 * 59.99693 * 14 12 11 43 43 H 0.96999 * 119.99851 * 179.97438 * 19 18 16 44 44 H 1.08997 * 115.55206 * 268.79630 * 24 2 1 45 45 H 1.08995 * 117.50205 * 0.02562 * 25 24 2 46 46 H 1.09001 * 117.49931 * 145.02798 * 25 24 2 47 47 H 1.08999 * 117.49740 * 214.97664 * 26 24 2 48 48 H 1.09006 * 117.49946 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5515 2.1332 -1.1962 5 6 1.8766 3.4237 -1.4092 6 8 2.5738 4.0131 -0.6109 7 6 1.3746 4.1338 -2.6400 8 6 1.8334 5.5985 -2.7362 9 6 0.4227 5.9267 -3.2531 10 6 -0.0593 4.6762 -2.4989 11 7 2.0183 -0.6906 -1.1961 12 6 3.3373 -0.7084 -1.4727 13 8 4.1287 -0.2365 -0.6841 14 6 3.8288 -1.3147 -2.7619 15 16 5.6325 -1.1865 -2.8397 16 6 5.9264 -1.9494 -4.4006 17 1 5.0974 -2.3216 -4.9843 18 6 7.2231 -2.0712 -4.8804 19 7 7.4426 -2.6407 -6.0467 20 14 8.6569 -1.4268 -3.8711 21 1 9.1528 -2.5011 -2.9738 22 1 9.7494 -0.9978 -4.7808 23 1 8.2080 -0.2693 -3.0563 24 6 2.0400 -0.7211 1.2493 25 6 2.9740 -1.9154 1.0437 26 6 1.5318 -2.1420 1.5017 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.1299 1.4427 0.0005 31 1 1.6765 1.9564 0.8899 32 1 0.9942 1.6616 -1.8349 33 1 1.5383 3.5644 -3.5549 34 1 2.6181 5.7626 -3.4746 35 1 2.0601 6.0494 -1.7701 36 1 0.0184 6.8582 -2.8572 37 1 0.3252 5.8481 -4.3359 38 1 -0.3504 4.8736 -1.4672 39 1 -0.8035 4.0966 -3.0451 40 1 1.3924 -1.1350 -1.7891 41 1 3.5366 -2.3639 -2.8044 42 1 3.3902 -0.7809 -3.6048 43 1 8.3488 -2.7254 -6.3821 44 1 2.2162 -0.0878 2.1187 45 1 3.2253 -2.1872 0.0185 46 1 3.7650 -2.0680 1.7779 47 1 1.3741 -2.4436 2.5372 48 1 0.8338 -2.5629 0.7779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704707624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:45 Heat of formation + Delta-G solvation = -49.084027 kcal Electronic energy + Delta-G solvation = -28225.566548 eV Core-core repulsion = 24407.395622 eV Total energy + Delta-G solvation = -3818.170925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.92923 -40.99448 -38.65238 -38.20242 -36.24410 -34.69617 -34.58876 -32.42393 -30.11701 -28.73275 -27.85879 -26.85082 -26.49324 -23.94717 -23.13028 -22.39911 -21.75474 -20.61298 -20.13808 -19.89239 -18.65733 -17.89028 -17.55268 -17.14727 -17.09454 -16.54933 -16.49082 -16.14056 -15.70873 -15.64148 -15.16924 -15.01074 -14.83453 -14.66248 -13.97390 -13.83138 -13.68753 -13.43979 -13.39089 -13.32318 -13.31158 -13.04129 -12.91619 -12.62535 -12.50507 -12.28706 -12.16544 -12.08520 -11.89762 -11.43963 -11.31656 -11.28687 -11.18849 -11.15104 -10.73395 -10.61987 -10.51470 -10.14664 -9.98063 -8.99017 -8.53475 -6.22596 0.98381 1.27783 1.44669 1.53512 1.60538 1.64987 2.13444 2.22027 2.27990 2.71540 2.85230 2.93524 3.53730 3.62425 3.65382 3.73633 3.77842 3.84976 3.91752 3.98007 4.17647 4.23329 4.23569 4.26849 4.44694 4.48735 4.55045 4.70415 4.78162 4.79868 4.84268 4.86336 4.88166 5.00461 5.03742 5.08948 5.09211 5.18540 5.21604 5.26937 5.30560 5.40896 5.52490 5.58162 5.69350 6.09931 6.52981 6.56194 6.92729 7.26833 7.29485 8.58969 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008731 B = 0.003802 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.117685 B = 7362.450181 C = 9619.580419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.207 3.793 3 C 0.111 3.889 4 N -0.707 5.707 5 C 0.514 3.486 6 O -0.592 6.592 7 C -0.141 4.141 8 C -0.133 4.133 9 C -0.130 4.130 10 C -0.109 4.109 11 N -0.708 5.708 12 C 0.540 3.460 13 O -0.539 6.539 14 C -0.112 4.112 15 S -0.177 6.177 16 C -0.526 4.526 17 H 0.063 0.937 18 C 0.049 3.951 19 N -0.916 5.916 20 Si 0.910 3.090 21 H -0.263 1.263 22 H -0.260 1.260 23 H -0.241 1.241 24 C -0.158 4.158 25 C -0.183 4.183 26 C -0.146 4.146 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.412 0.588 33 H 0.128 0.872 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.418 0.582 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.276 0.724 44 H 0.105 0.895 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.105 0.895 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.484 8.491 9.969 27.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.121 3.879 3 C -0.014 4.014 4 N -0.359 5.359 5 C 0.302 3.698 6 O -0.472 6.472 7 C -0.162 4.162 8 C -0.171 4.171 9 C -0.167 4.167 10 C -0.147 4.147 11 N -0.364 5.364 12 C 0.325 3.675 13 O -0.415 6.415 14 C -0.264 4.264 15 S 0.050 5.950 16 C -0.674 4.674 17 H 0.082 0.918 18 C -0.156 4.156 19 N -0.554 5.554 20 Si 0.732 3.268 21 H -0.187 1.187 22 H -0.184 1.184 23 H -0.166 1.166 24 C -0.178 4.178 25 C -0.221 4.221 26 C -0.183 4.183 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.249 0.751 33 H 0.146 0.854 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.256 0.744 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.123 0.877 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.123 0.877 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -22.580 9.629 11.694 27.191 hybrid contribution 0.320 -1.052 -1.375 1.761 sum -22.260 8.577 10.319 25.991 Atomic orbital electron populations 1.22065 0.89039 1.04756 1.04414 1.20016 0.96026 0.88386 0.83481 1.21647 0.99809 0.91758 0.88204 1.45793 1.53224 1.11464 1.25428 1.21174 0.78909 0.81884 0.87870 1.90669 1.39821 1.67467 1.49271 1.22973 1.00404 0.96908 0.95960 1.22838 0.98816 0.93794 1.01630 1.22816 0.94246 0.98437 1.01216 1.22810 0.93041 0.97251 1.01558 1.45900 1.06336 1.57008 1.27157 1.19714 0.83178 0.78323 0.86245 1.90724 1.55756 1.45923 1.49106 1.23303 0.98141 1.05448 0.99459 1.84825 1.04643 1.79311 1.26261 1.22467 0.96722 1.43880 1.04329 0.91834 1.25482 1.00694 0.94018 0.95454 1.70007 1.22965 1.43094 1.19353 0.85932 0.80039 0.80990 0.79802 1.18735 1.18391 1.16554 1.22470 1.05211 0.91318 0.98787 1.22878 0.94126 1.03382 1.01691 1.23068 0.95763 0.96354 1.03081 0.90212 0.89409 0.89629 0.93055 0.91049 0.75052 0.85387 0.91374 0.91148 0.90331 0.88198 0.90414 0.87983 0.74411 0.87186 0.87165 0.91404 0.87711 0.90328 0.90861 0.87704 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.19 71.98 0.59 -0.61 16 2 C 0.21 3.58 0.55 3.60 0.00 3.58 16 3 C 0.11 2.69 4.24 86.38 0.37 3.05 16 4 N -0.71 -14.64 5.13 -463.05 -2.37 -17.02 16 5 C 0.51 13.41 7.36 87.66 0.65 14.06 16 6 O -0.59 -21.62 15.90 -3.02 -0.05 -21.67 16 7 C -0.14 -2.58 4.16 -10.95 -0.05 -2.63 16 8 C -0.13 -2.62 7.40 31.13 0.23 -2.39 16 9 C -0.13 -1.61 8.09 31.12 0.25 -1.36 16 10 C -0.11 -1.30 7.64 31.18 0.24 -1.06 16 11 N -0.71 -13.45 4.19 -422.92 -1.77 -15.22 16 12 C 0.54 16.72 5.11 87.66 0.45 17.17 16 13 O -0.54 -21.43 11.78 -3.03 -0.04 -21.47 16 14 C -0.11 -4.00 6.16 71.24 0.44 -3.56 16 15 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 16 C -0.53 -30.38 10.04 67.95 0.68 -29.70 16 17 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 18 C 0.05 2.88 5.50 84.86 0.47 3.34 16 19 N -0.92 -55.67 13.97 21.65 0.30 -55.36 16 20 Si 0.91 45.61 27.74 68.60 1.90 47.51 16 21 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.26 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.24 -12.26 6.74 99.48 0.67 -11.59 16 24 C -0.16 -3.18 4.83 -10.79 -0.05 -3.23 16 25 C -0.18 -4.64 8.30 30.59 0.25 -4.38 16 26 C -0.15 -2.32 9.68 30.59 0.30 -2.02 16 27 H 0.08 0.42 6.86 -2.39 -0.02 0.40 16 28 H 0.09 0.47 6.96 -2.38 -0.02 0.46 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 1.82 5.93 -2.39 -0.01 1.80 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.41 5.68 7.15 -92.71 -0.66 5.02 16 33 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.72 7.43 -2.39 -0.02 1.70 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 39 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.42 4.94 8.49 -92.71 -0.79 4.15 16 41 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 42 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 43 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.10 2.19 8.07 -2.39 -0.02 2.17 16 45 H 0.08 2.31 5.09 -2.39 -0.01 2.30 16 46 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.11 1.35 7.26 -2.38 -0.02 1.33 16 Total: -1.00 -81.71 392.67 1.23 -80.48 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -0.51 Total: 22.37 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 4.81 Total: -9.74 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -3.84 Total: -87.60 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.08 Total: -43.13 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -81.71 1.23 -80.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704707624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.398 kcal (2) G-P(sol) polarization free energy of solvation -81.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds