Wall clock time and date at job start Sat Apr 11 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47290 * 225.13679 * 3 2 1 5 5 C 1.46900 * 111.00422 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47160 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47017 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47075 * 179.97438 * 7 6 5 9 9 C 1.42902 * 113.99828 * 180.02562 * 8 7 6 10 10 C 1.53070 * 109.44395 * 89.79670 * 9 8 7 11 11 C 1.53195 * 109.29524 * 181.23525 * 10 9 8 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 9 13 13 C 1.34783 * 120.63144 * 233.55709 * 12 11 10 14 14 O 1.21274 * 119.99655 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99922 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.46922 * 180.02562 * 15 13 12 17 17 C 1.76204 * 99.99932 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00106 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99685 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99706 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00215 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47380 * 89.99834 * 21 19 17 23 23 H 1.48506 * 109.46972 * 210.00059 * 21 19 17 24 24 H 1.48501 * 109.47000 * 329.99393 * 21 19 17 25 25 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 26 26 C 1.53039 * 109.45918 * 210.00158 * 9 8 7 27 27 H 4.40887 * 5.52212 * 179.97438 * 4 1 2 28 28 H 1.08999 * 109.47006 * 105.13877 * 3 2 1 29 29 H 1.09007 * 109.47516 * 345.14030 * 3 2 1 30 30 H 1.00906 * 111.00277 * 303.95759 * 4 3 2 31 31 H 1.09000 * 109.47083 * 59.99753 * 5 4 3 32 32 H 1.09006 * 109.47152 * 300.00166 * 5 4 3 33 33 H 1.08995 * 109.47238 * 60.00192 * 6 5 4 34 34 H 1.08999 * 109.46823 * 299.99664 * 6 5 4 35 35 H 1.09000 * 109.47112 * 59.99619 * 7 6 5 36 36 H 1.09006 * 109.47266 * 299.99943 * 7 6 5 37 37 H 1.09007 * 109.45850 * 329.96828 * 9 8 7 38 38 H 1.08997 * 109.38860 * 61.35712 * 10 9 8 39 39 H 1.09003 * 109.62046 * 301.25055 * 10 9 8 40 40 H 1.09002 * 109.58720 * 185.71834 * 11 10 9 41 41 H 1.08996 * 109.58651 * 65.43731 * 11 10 9 42 42 H 1.09001 * 109.47385 * 300.00399 * 15 13 12 43 43 H 1.08997 * 109.47457 * 60.00250 * 15 13 12 44 44 H 0.97005 * 120.00303 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.58787 * 66.18123 * 25 12 11 46 46 H 1.09007 * 109.58600 * 186.46436 * 25 12 11 47 47 H 1.09002 * 109.49876 * 58.67502 * 26 9 8 48 48 H 1.09005 * 109.52615 * 298.59752 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1352 0.9779 0.9817 5 6 4.6037 1.0066 1.0090 6 6 5.0745 2.0332 2.0412 7 6 6.6039 2.0627 2.0702 8 8 7.0437 3.0219 3.0338 9 6 8.4647 3.1293 3.1403 10 6 8.9708 4.1872 2.1566 11 6 10.4972 4.2777 2.2516 12 7 10.8731 4.5218 3.6507 13 6 11.6687 5.5597 3.9770 14 8 12.0810 6.3030 3.1119 15 6 12.0449 5.7971 5.4168 16 16 13.1121 7.2548 5.5290 17 6 13.3909 7.2967 7.2683 18 1 12.9423 6.5489 7.9053 19 6 14.1873 8.2909 7.8196 20 7 14.3952 8.3225 9.1190 21 14 14.9628 9.5848 6.7179 22 1 14.0406 10.7413 6.5876 23 1 16.2449 10.0387 7.3142 24 1 15.2197 9.0028 5.3761 25 6 10.3650 3.6132 4.6876 26 6 8.8399 3.5325 4.5681 27 1 -1.0502 -0.0001 -0.0003 28 1 3.0091 0.2692 -0.9920 29 1 3.0098 -0.9925 0.2636 30 1 2.7593 1.8958 0.7965 31 1 4.9801 1.2823 0.0240 32 1 4.9814 0.0205 1.2794 33 1 4.6981 1.7570 3.0262 34 1 4.6968 3.0194 1.7713 35 1 6.9807 2.3386 1.0853 36 1 6.9813 1.0764 2.3404 37 1 8.9203 2.1679 2.9029 38 1 8.5328 5.1533 2.4072 39 1 8.6853 3.9099 1.1419 40 1 10.8541 5.0980 1.6288 41 1 10.9405 3.3417 1.9121 42 1 11.1426 5.9616 6.0058 43 1 12.5764 4.9269 5.8018 44 1 14.9521 9.0171 9.5044 45 1 10.7955 2.6217 4.5476 46 1 10.6369 3.9939 5.6722 47 1 8.4590 2.7889 5.2682 48 1 8.4049 4.5051 4.7983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717517093.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:58 Heat of formation + Delta-G solvation = -33.730655 kcal Electronic energy + Delta-G solvation = -25770.756955 eV Core-core repulsion = 21953.251802 eV Total energy + Delta-G solvation = -3817.505153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18313 -38.73147 -37.56014 -36.38305 -34.08121 -32.51770 -32.43106 -31.75032 -31.08029 -29.02772 -27.15784 -25.63473 -24.86432 -23.86153 -23.39712 -22.03163 -21.14679 -19.21331 -18.75446 -17.75906 -17.30795 -16.87530 -16.54630 -15.98652 -15.70683 -15.61427 -15.40418 -15.05957 -14.95715 -14.66596 -14.45351 -13.97672 -13.78191 -13.63869 -13.28791 -13.21949 -12.94491 -12.77075 -12.58179 -12.39687 -12.18628 -11.94201 -11.72026 -11.48911 -11.45302 -11.26211 -11.06720 -11.00770 -10.97438 -10.81430 -10.75892 -10.58979 -9.85880 -9.80167 -9.46763 -9.11512 -9.00410 -8.67588 -8.49258 -6.92237 -6.28910 -4.00756 2.17533 2.33873 2.68966 2.88601 3.13954 3.20851 3.33492 3.50633 3.58239 3.73259 3.98064 4.32994 4.40282 4.46109 4.48005 4.59242 4.67300 4.70496 4.79681 4.83351 4.84190 4.91329 4.95456 5.03166 5.06132 5.07130 5.10288 5.15410 5.28097 5.31480 5.43268 5.44267 5.57128 5.61810 5.63883 5.72108 5.74230 5.81950 5.88506 5.97957 6.02808 6.28815 6.52119 6.67389 6.92927 7.10804 7.42145 7.94080 8.40946 8.41683 9.17385 10.80310 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033692 B = 0.001462 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.855931 B =19149.771730 C =19440.025947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.192 4.192 3 C 0.167 3.833 4 N -0.687 5.687 5 C 0.062 3.938 6 C -0.118 4.118 7 C 0.064 3.936 8 O -0.379 6.379 9 C 0.094 3.906 10 C -0.155 4.155 11 C 0.116 3.884 12 N -0.620 5.620 13 C 0.535 3.465 14 O -0.519 6.519 15 C -0.122 4.122 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.097 3.903 20 N -0.880 5.880 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.110 3.890 26 C -0.132 4.132 27 H 0.219 0.781 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.347 0.653 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.083 0.917 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.718 -19.359 -17.938 34.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.192 4.192 3 C 0.039 3.961 4 N -0.319 5.319 5 C -0.067 4.067 6 C -0.156 4.156 7 C -0.013 4.013 8 O -0.299 6.299 9 C 0.036 3.964 10 C -0.194 4.194 11 C -0.007 4.007 12 N -0.357 5.357 13 C 0.323 3.677 14 O -0.393 6.393 15 C -0.273 4.273 16 S 0.083 5.917 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.013 4.013 26 C -0.170 4.170 27 H 0.235 0.765 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.166 0.834 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.116 0.884 47 H 0.102 0.898 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.149 -18.489 -18.419 33.591 hybrid contribution -0.038 -0.009 -0.131 0.137 sum -21.186 -18.498 -18.551 33.692 Atomic orbital electron populations 1.24988 0.96002 0.99555 1.00220 1.22870 0.94279 1.01352 1.00692 1.18832 0.84794 0.98058 0.94390 1.60400 1.08092 1.11883 1.51498 1.21870 0.86914 1.00214 0.97737 1.21444 0.93778 0.99549 1.00786 1.22414 0.94828 0.91915 0.92143 1.87929 1.21611 1.60469 1.59860 1.22080 0.80887 0.97722 0.95715 1.22439 0.96079 1.01038 0.99803 1.21460 0.93530 1.02424 0.83297 1.48111 1.50666 1.29397 1.07489 1.20312 0.77243 0.79259 0.90915 1.90684 1.52835 1.45182 1.50616 1.23318 1.04330 1.04626 0.95002 1.84801 1.61565 1.33091 1.12213 1.22307 1.36874 1.18201 0.89477 0.89375 1.24700 0.94821 0.96918 0.94778 1.69936 1.37486 1.33991 1.10272 0.86743 0.79657 0.82706 0.82803 1.19206 1.19932 1.15932 1.21732 0.92758 0.94158 0.92682 1.22003 0.95697 1.03761 0.95585 0.76453 0.92679 0.88571 0.83443 0.94643 0.90379 0.89969 0.91051 0.93470 0.93208 0.92044 0.90448 0.90819 0.88539 0.91769 0.88454 0.88453 0.91941 0.91168 0.88425 0.89845 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.13 19.25 29.55 0.57 -0.56 16 2 C -0.19 -1.32 13.60 -37.13 -0.50 -1.82 16 3 C 0.17 0.87 6.16 -6.62 -0.04 0.83 16 4 N -0.69 -3.99 6.47 -116.89 -0.76 -4.75 16 5 C 0.06 0.30 5.68 -3.82 -0.02 0.27 16 6 C -0.12 -0.72 5.84 -26.73 -0.16 -0.87 16 7 C 0.06 0.43 5.74 37.16 0.21 0.64 16 8 O -0.38 -3.60 9.99 -35.23 -0.35 -3.95 16 9 C 0.09 0.82 2.57 -26.67 -0.07 0.75 16 10 C -0.15 -1.47 5.70 -26.59 -0.15 -1.62 16 11 C 0.12 1.30 6.43 -3.71 -0.02 1.27 16 12 N -0.62 -8.27 2.97 -172.77 -0.51 -8.79 16 13 C 0.53 9.64 7.72 -10.98 -0.08 9.56 16 14 O -0.52 -11.23 15.27 5.56 0.08 -11.15 16 15 C -0.12 -2.37 4.50 36.00 0.16 -2.21 16 16 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 17 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 18 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.51 13.97 55.49 0.78 -25.73 16 21 Si 0.86 21.78 27.74 -169.99 -4.71 17.07 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 25 C 0.11 1.12 6.34 -3.71 -0.02 1.10 16 26 C -0.13 -1.23 5.73 -26.61 -0.15 -1.38 16 27 H 0.22 0.59 7.80 -54.08 -0.42 0.17 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.35 1.88 8.71 -39.29 -0.34 1.54 16 31 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.28 7.84 -51.93 -0.41 -0.13 16 36 H 0.05 0.29 8.09 -51.93 -0.42 -0.13 16 37 H 0.06 0.46 7.79 -51.93 -0.40 0.05 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.58 7.84 -51.93 -0.41 0.17 16 40 H 0.10 1.26 7.00 -51.93 -0.36 0.90 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 1.76 7.69 -51.91 -0.40 1.36 16 43 H 0.10 1.74 7.94 -51.92 -0.41 1.33 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 1.02 5.93 -51.92 -0.31 0.71 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 409.27 15.07 6.17 6.17 Total: -1.00 -34.91 409.27 -9.49 -44.40 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -8.11 Total: -1.68 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -0.07 Total: -5.96 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -0.50 Total: -39.26 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.27 Total: -15.10 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.07 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.91 -9.49 -44.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717517093.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.666 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds