Wall clock time and date at job start Sat Apr 11 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99601 * 2 1 4 4 H 1.08999 * 109.47462 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.47396 * 240.00035 * 3 2 1 6 6 C 1.53001 * 109.47005 * 64.99978 * 5 3 2 7 7 C 1.53004 * 109.46790 * 119.99987 * 3 2 1 8 8 C 1.50700 * 109.47287 * 295.00341 * 7 3 2 9 9 O 1.21280 * 119.99942 * 359.97438 * 8 7 3 10 10 N 1.34772 * 120.00036 * 180.02562 * 8 7 3 11 11 C 1.46501 * 120.00042 * 179.97438 * 10 8 7 12 12 H 1.08998 * 112.84866 * 23.80678 * 11 10 8 13 13 C 1.53787 * 113.61128 * 154.99929 * 11 10 8 14 14 C 1.53784 * 87.07923 * 139.98386 * 13 11 10 15 15 H 1.09002 * 113.61478 * 89.11632 * 14 13 11 16 16 N 1.46497 * 113.61569 * 220.01663 * 14 13 11 17 17 C 1.34769 * 120.00274 * 204.99925 * 16 14 13 18 18 O 1.21283 * 120.00052 * 0.02562 * 17 16 14 19 19 C 1.50706 * 119.99945 * 179.97438 * 17 16 14 20 20 S 1.81002 * 109.46844 * 180.02562 * 19 17 16 21 21 C 1.76203 * 99.99893 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99958 * 359.97438 * 21 20 19 23 23 C 1.38798 * 120.00040 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99990 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99886 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47381 * 89.99989 * 25 23 21 27 27 H 1.48504 * 109.46726 * 210.00165 * 25 23 21 28 28 H 1.48496 * 109.47119 * 329.99773 * 25 23 21 29 29 C 1.53779 * 87.08045 * 334.56667 * 14 13 11 30 30 H 1.08005 * 119.99761 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.00715 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.00080 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47419 * 185.00536 * 5 3 2 34 34 H 1.09005 * 109.47016 * 305.00560 * 5 3 2 35 35 H 1.09005 * 109.46758 * 60.00424 * 6 5 3 36 36 H 1.08995 * 109.47205 * 179.97438 * 6 5 3 37 37 H 1.08997 * 109.46962 * 300.00499 * 6 5 3 38 38 H 1.08999 * 109.47233 * 174.99725 * 7 3 2 39 39 H 1.09002 * 109.47126 * 55.00058 * 7 3 2 40 40 H 0.97005 * 119.99829 * 359.97438 * 10 8 7 41 41 H 1.09004 * 113.61202 * 254.53139 * 13 11 10 42 42 H 1.08994 * 113.61447 * 25.43570 * 13 11 10 43 43 H 0.97009 * 119.99534 * 24.99936 * 16 14 13 44 44 H 1.08991 * 109.47537 * 300.00273 * 19 17 16 45 45 H 1.09001 * 109.47014 * 60.00675 * 19 17 16 46 46 H 0.97007 * 120.00413 * 179.97438 * 24 23 21 47 47 H 1.09006 * 113.61307 * 270.88660 * 29 14 13 48 48 H 1.09007 * 113.61642 * 139.98417 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3863 -1.2492 6 6 2.0563 1.4308 -2.4953 7 6 2.9430 1.3862 1.2493 8 6 2.0697 1.4299 2.4766 9 8 0.8625 1.3997 2.3633 10 7 2.6300 1.5036 3.7001 11 6 1.7810 1.5466 4.8933 12 1 0.7953 1.1118 4.7273 13 6 2.4767 1.0290 6.1633 14 6 1.7862 2.1791 6.9154 15 1 0.8014 1.9183 7.3030 16 7 2.6409 2.8224 7.9163 17 6 2.0865 3.4599 8.9663 18 8 0.8799 3.5007 9.0828 19 6 2.9658 4.1212 9.9962 20 16 1.9323 4.8851 11.2708 21 6 3.1817 5.5635 12.3117 22 1 4.2238 5.4338 12.0596 23 6 2.8266 6.2638 13.4563 24 7 3.7599 6.7702 14.2341 25 14 1.0241 6.4876 13.8928 26 1 0.5773 5.3573 14.7459 27 1 0.8484 7.7644 14.6306 28 1 0.2138 6.5193 12.6488 29 6 1.7415 2.9260 5.5719 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5401 0.9352 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.5539 2.2880 -1.2055 34 1 3.5905 0.5106 -1.2952 35 1 1.4089 2.3065 -2.4493 36 1 2.6829 1.4891 -3.3852 37 1 1.4455 0.5292 -2.5389 38 1 3.5539 2.2878 1.2057 39 1 3.5905 0.5105 1.2952 40 1 3.5955 1.5281 3.7907 41 1 2.1395 0.0399 6.4736 42 1 3.5626 1.1170 6.1330 43 1 3.6059 2.7895 7.8233 44 1 3.6140 3.3742 10.4541 45 1 3.5758 4.8862 9.5159 46 1 3.5118 7.2599 15.0339 47 1 2.6267 3.5326 5.3799 48 1 0.8110 3.4685 5.4046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720816169.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:04 Heat of formation + Delta-G solvation = -78.414092 kcal Electronic energy + Delta-G solvation = -25884.242722 eV Core-core repulsion = 22064.799950 eV Total energy + Delta-G solvation = -3819.442772 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45663 -40.58492 -39.20261 -37.49610 -35.22350 -34.67138 -33.72750 -32.59204 -31.26891 -30.56404 -27.86279 -26.74339 -26.29873 -24.47137 -22.51227 -21.93411 -21.40921 -21.09889 -20.38942 -19.81949 -18.08819 -17.90379 -17.69915 -17.10668 -16.56186 -16.48366 -16.41111 -15.98385 -15.76846 -15.49299 -15.31386 -14.93847 -14.78441 -14.62827 -14.35232 -14.10961 -13.87214 -13.47423 -13.41109 -13.34817 -13.02031 -13.00633 -12.81377 -12.76314 -12.37826 -12.30628 -12.07567 -12.03076 -11.93415 -11.85638 -11.66555 -11.34152 -11.17210 -10.97171 -10.79793 -10.52677 -10.16594 -10.00650 -9.85712 -8.99479 -8.51684 -6.22239 0.99526 1.31015 1.46893 1.54742 1.55552 1.56117 1.77031 2.11615 2.24800 2.44748 2.73745 2.86852 3.40180 3.56458 3.83718 3.85025 3.87835 3.90954 3.93500 3.96105 4.25750 4.38235 4.42244 4.47286 4.47900 4.58341 4.64793 4.68427 4.70095 4.71587 4.87066 4.89722 5.00579 5.03044 5.06309 5.08825 5.14154 5.20577 5.40781 5.47400 5.49811 5.63771 5.70730 5.84897 6.07343 6.11404 6.49708 6.67875 6.93974 7.22104 7.40125 8.60573 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.034090 B = 0.001523 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.158573 B =18376.700908 C =18564.549052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.145 4.145 3 C -0.046 4.046 4 H 0.056 0.944 5 C -0.110 4.110 6 C -0.154 4.154 7 C -0.128 4.128 8 C 0.504 3.496 9 O -0.575 6.575 10 N -0.708 5.708 11 C 0.131 3.869 12 H 0.096 0.904 13 C -0.126 4.126 14 C 0.117 3.883 15 H 0.093 0.907 16 N -0.697 5.697 17 C 0.535 3.465 18 O -0.566 6.566 19 C -0.111 4.111 20 S -0.181 6.181 21 C -0.528 4.528 22 H 0.064 0.936 23 C 0.048 3.952 24 N -0.916 5.916 25 Si 0.913 3.087 26 H -0.262 1.262 27 H -0.259 1.259 28 H -0.239 1.239 29 C -0.161 4.161 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.418 0.582 41 H 0.090 0.910 42 H 0.123 0.877 43 H 0.420 0.580 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.277 0.723 47 H 0.103 0.897 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 -15.903 -32.879 36.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.163 4.163 3 C -0.065 4.065 4 H 0.075 0.925 5 C -0.148 4.148 6 C -0.212 4.212 7 C -0.168 4.168 8 C 0.292 3.708 9 O -0.454 6.454 10 N -0.360 5.360 11 C 0.025 3.975 12 H 0.114 0.886 13 C -0.165 4.165 14 C 0.011 3.989 15 H 0.111 0.889 16 N -0.350 5.350 17 C 0.320 3.680 18 O -0.444 6.444 19 C -0.262 4.262 20 S 0.045 5.955 21 C -0.676 4.676 22 H 0.082 0.918 23 C -0.158 4.158 24 N -0.554 5.554 25 Si 0.735 3.265 26 H -0.187 1.187 27 H -0.184 1.184 28 H -0.163 1.163 29 C -0.201 4.201 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.255 0.745 41 H 0.109 0.891 42 H 0.141 0.859 43 H 0.258 0.742 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.086 0.914 47 H 0.121 0.879 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.786 -15.767 -32.626 36.280 hybrid contribution 1.296 0.489 0.780 1.590 sum 3.083 -15.278 -31.846 35.456 Atomic orbital electron populations 1.23692 0.96720 1.00754 1.01123 1.22861 0.95674 0.98145 0.99592 1.20166 0.96625 0.95591 0.94160 0.92546 1.21517 0.97514 1.03209 0.92535 1.21780 0.99964 1.01370 0.98044 1.21767 0.98173 1.06737 0.90083 1.21378 0.89107 0.74523 0.85817 1.90729 1.17004 1.50498 1.87161 1.45850 1.10779 1.74752 1.04664 1.21988 0.95840 0.95929 0.83778 0.88605 1.23652 1.02338 0.98262 0.92253 1.22285 0.95748 0.94521 0.86334 0.88881 1.45625 1.11017 1.54949 1.23374 1.20037 0.88021 0.77861 0.82047 1.90697 1.16564 1.60415 1.76706 1.23280 1.01557 1.03720 0.97601 1.84785 1.14106 1.69893 1.26674 1.22460 0.93820 1.40123 1.11169 0.91784 1.25524 1.01925 0.93549 0.94794 1.70009 1.34878 1.35718 1.14814 0.85893 0.80539 0.79205 0.80895 1.18717 1.18362 1.16261 1.23973 1.03033 0.98008 0.95112 0.88894 0.90411 0.86704 0.90541 0.90436 0.93691 0.91896 0.93224 0.86321 0.86168 0.74458 0.89143 0.85892 0.74232 0.86579 0.86689 0.91384 0.87869 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.27 13.22 67.78 0.90 -2.37 16 2 C -0.14 -2.00 6.76 25.65 0.17 -1.82 16 3 C -0.05 -0.52 1.82 -11.54 -0.02 -0.54 16 4 H 0.06 0.92 7.60 -2.39 -0.02 0.90 16 5 C -0.11 -0.77 5.39 30.59 0.16 -0.61 16 6 C -0.15 -1.42 9.73 71.98 0.70 -0.72 16 7 C -0.13 -0.90 5.16 29.85 0.15 -0.75 16 8 C 0.50 7.30 7.58 87.66 0.66 7.96 16 9 O -0.58 -13.93 13.77 -3.03 -0.04 -13.98 16 10 N -0.71 -6.95 5.35 -440.04 -2.36 -9.31 16 11 C 0.13 1.84 4.24 45.52 0.19 2.03 16 12 H 0.10 1.85 7.46 -2.39 -0.02 1.84 16 13 C -0.13 -1.29 7.58 31.12 0.24 -1.06 16 14 C 0.12 2.20 4.24 45.52 0.19 2.39 16 15 H 0.09 2.31 7.47 -2.39 -0.02 2.29 16 16 N -0.70 -14.45 5.35 -440.04 -2.36 -16.81 16 17 C 0.53 17.57 7.85 87.66 0.69 18.26 16 18 O -0.57 -23.97 15.46 -3.04 -0.05 -24.01 16 19 C -0.11 -3.99 6.16 71.24 0.44 -3.55 16 20 S -0.18 -9.08 18.55 -56.49 -1.05 -10.13 16 21 C -0.53 -30.46 10.04 67.95 0.68 -29.77 16 22 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 23 C 0.05 2.78 5.50 84.86 0.47 3.24 16 24 N -0.92 -55.43 13.97 21.65 0.30 -55.13 16 25 Si 0.91 44.99 27.74 68.60 1.90 46.90 16 26 H -0.26 -12.63 7.11 99.48 0.71 -11.93 16 27 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 29 C -0.16 -2.79 7.68 31.12 0.24 -2.55 16 30 H 0.09 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.08 1.61 7.83 -2.91 -0.02 1.59 16 32 H 0.12 1.24 8.06 -2.91 -0.02 1.22 16 33 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 35 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.05 0.53 7.38 -2.39 -0.02 0.51 16 38 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.42 1.11 8.73 -92.70 -0.81 0.30 16 41 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.12 0.54 8.09 -2.39 -0.02 0.52 16 43 H 0.42 5.46 8.73 -92.70 -0.81 4.65 16 44 H 0.12 3.77 8.14 -2.40 -0.02 3.75 16 45 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 46 H 0.28 15.50 8.31 -92.70 -0.77 14.73 16 47 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 48 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -81.21 409.40 1.52 -79.69 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -0.70 Total: 12.62 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 5.87 Total: -9.85 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -4.41 Total: -81.24 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.09 Total: -37.99 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.90 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.13 kcal Total: -81.21 1.52 -79.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720816169.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.278 kcal (2) G-P(sol) polarization free energy of solvation -81.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds