Wall clock time and date at job start Sat Apr 11 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42893 * 114.00509 * 2 1 4 4 C 1.50698 * 109.47811 * 180.02562 * 3 2 1 5 5 S 1.70444 * 124.59086 * 270.02847 * 4 3 2 6 6 C 1.75514 * 92.44446 * 179.97438 * 5 4 3 7 7 C 1.32766 * 110.57646 * 359.97438 * 6 5 4 8 8 C 1.36006 * 124.59116 * 89.71925 * 4 3 2 9 9 C 1.47194 * 123.46394 * 359.97438 * 8 4 3 10 10 O 1.21639 * 120.00086 * 306.40340 * 9 8 4 11 11 N 1.34783 * 120.00165 * 126.39541 * 9 8 4 12 12 C 1.46501 * 119.99928 * 183.90501 * 11 9 8 13 13 C 1.52999 * 109.46867 * 90.00170 * 12 11 9 14 14 N 1.46501 * 109.46867 * 179.97438 * 13 12 11 15 15 C 1.46510 * 119.99834 * 270.00139 * 14 13 12 16 16 C 1.36930 * 120.00155 * 90.00145 * 14 13 12 17 17 H 1.07994 * 120.00322 * 24.26229 * 16 14 13 18 18 C 1.38822 * 119.99856 * 204.26450 * 16 14 13 19 19 N 1.31613 * 120.00083 * 8.83573 * 18 16 14 20 20 Si 1.86805 * 119.99656 * 188.83739 * 18 16 14 21 21 H 1.48494 * 109.47253 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46913 * 120.00210 * 20 18 16 23 23 H 1.48500 * 109.46819 * 239.99721 * 20 18 16 24 24 C 1.46501 * 119.99684 * 3.90842 * 11 9 8 25 25 C 1.52998 * 109.46814 * 122.12583 * 24 11 9 26 26 C 1.53006 * 109.46803 * 242.12152 * 24 11 9 27 27 H 1.09000 * 109.47301 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47155 * 299.99950 * 1 2 3 29 29 H 1.09001 * 109.47340 * 59.99859 * 1 2 3 30 30 H 1.09007 * 109.47012 * 300.00482 * 3 2 1 31 31 H 1.09003 * 109.47066 * 59.99593 * 3 2 1 32 32 H 1.07996 * 124.71248 * 180.02562 * 6 5 4 33 33 H 1.07998 * 123.46270 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.46778 * 210.00296 * 12 11 9 35 35 H 1.08996 * 109.47089 * 330.00086 * 12 11 9 36 36 H 1.09002 * 109.47525 * 299.99669 * 13 12 11 37 37 H 1.08996 * 109.47335 * 60.00067 * 13 12 11 38 38 H 1.09001 * 109.47309 * 95.07784 * 15 14 13 39 39 H 1.08996 * 109.46881 * 215.07365 * 15 14 13 40 40 H 1.09001 * 109.46889 * 335.07888 * 15 14 13 41 41 H 0.96999 * 119.99852 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.47364 * 2.12390 * 24 11 9 43 43 H 1.08999 * 109.47313 * 59.99775 * 25 24 11 44 44 H 1.09007 * 109.46481 * 179.97438 * 25 24 11 45 45 H 1.08999 * 109.47087 * 299.99292 * 25 24 11 46 46 H 1.09003 * 109.46731 * 60.00677 * 26 24 11 47 47 H 1.08998 * 109.46809 * 179.97438 * 26 24 11 48 48 H 1.08999 * 109.47354 * 300.00243 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5125 1.1864 -0.0006 5 16 4.4777 1.1091 1.4021 6 6 5.9587 0.9916 0.4676 7 6 5.6927 1.0127 -0.8330 8 6 4.2814 1.1202 -1.1206 9 6 3.7319 1.1566 -2.4856 10 8 2.8603 0.3732 -2.8115 11 7 4.1943 2.0582 -3.3744 12 6 3.5889 2.1518 -4.7052 13 6 2.4363 3.1574 -4.6715 14 7 1.8313 3.2514 -6.0025 15 6 2.3343 4.2317 -6.9682 16 6 0.7958 2.4232 -6.3440 17 1 0.1707 1.9947 -5.5746 18 6 0.5495 2.1342 -7.6793 19 7 1.4080 2.5103 -8.6032 20 14 -1.0005 1.2114 -8.1646 21 1 -1.7953 0.9047 -6.9483 22 1 -1.8088 2.0510 -9.0848 23 1 -0.6297 -0.0546 -8.8466 24 6 5.3023 2.9445 -3.0096 25 6 6.4546 2.7535 -3.9979 26 6 4.8281 4.3985 -3.0539 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8463 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 6.9488 0.9123 0.8916 33 1 6.4532 0.9520 -1.5974 34 1 4.3393 2.4830 -5.4232 35 1 3.2094 1.1739 -5.0013 36 1 1.6860 2.8262 -3.9536 37 1 2.8158 4.1353 -4.3754 38 1 3.0662 3.7561 -7.6211 39 1 1.5057 4.6105 -7.5664 40 1 2.8054 5.0578 -6.4354 41 1 1.2361 2.3080 -9.5361 42 1 5.6435 2.7041 -2.0027 43 1 6.1133 2.9939 -5.0048 44 1 7.2788 3.4133 -3.7267 45 1 6.7924 1.7177 -3.9663 46 1 4.0072 4.5345 -2.3498 47 1 5.6523 5.0579 -2.7821 48 1 4.4868 4.6389 -4.0608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734552034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:46 Heat of formation + Delta-G solvation = -12.112884 kcal Electronic energy + Delta-G solvation = -28934.661549 eV Core-core repulsion = 25118.093813 eV Total energy + Delta-G solvation = -3816.567736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.19336 -38.00933 -36.91952 -36.48610 -35.30681 -31.91879 -31.35044 -30.98127 -28.69028 -27.30749 -27.01139 -25.89377 -25.64560 -23.99922 -22.79637 -22.12530 -20.64009 -20.08032 -18.38707 -17.68474 -16.89991 -16.54943 -16.44427 -15.84827 -15.47663 -15.01101 -14.80239 -14.62620 -14.37554 -13.96500 -13.63478 -13.35445 -13.31432 -13.24094 -12.99497 -12.70826 -12.50482 -12.24347 -12.14987 -12.07724 -11.89792 -11.68257 -11.44242 -11.39534 -11.16213 -11.07731 -10.85825 -10.79306 -10.68273 -10.42393 -10.06087 -9.89579 -9.70748 -9.62614 -9.48604 -9.08301 -8.57007 -8.47416 -8.28611 -6.67760 -5.67139 -3.14208 0.68208 1.35966 1.75359 2.05886 3.10869 3.38448 3.43917 3.50239 3.53547 3.87992 4.54956 4.57430 4.68880 4.84273 4.88055 5.05675 5.13361 5.25617 5.30716 5.33360 5.37096 5.49720 5.50391 5.59379 5.63338 5.70631 5.73286 5.80905 5.81777 5.84363 5.92453 5.93829 6.10850 6.19183 6.24289 6.33926 6.45167 6.70644 6.75292 6.90392 7.08327 7.12882 7.40771 7.76272 7.77948 7.89341 8.46084 8.54626 9.30580 9.91913 10.40558 11.37849 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003804 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.448561 B = 7358.936886 C = 9025.804917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.373 6.373 3 C 0.134 3.866 4 C -0.173 4.173 5 S 0.183 5.817 6 C -0.227 4.227 7 C -0.111 4.111 8 C -0.123 4.123 9 C 0.566 3.434 10 O -0.513 6.513 11 N -0.595 5.595 12 C 0.093 3.907 13 C 0.141 3.859 14 N -0.599 5.599 15 C 0.165 3.835 16 C -0.249 4.249 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.911 5.911 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.121 3.879 25 C -0.164 4.164 26 C -0.165 4.165 27 H 0.088 0.912 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.170 0.830 33 H 0.151 0.849 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.030 0.970 39 H 0.043 0.957 40 H -0.005 1.005 41 H 0.251 0.749 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.836 2.053 20.664 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C 0.056 3.944 4 C -0.292 4.292 5 S 0.450 5.550 6 C -0.362 4.362 7 C -0.141 4.141 8 C -0.141 4.141 9 C 0.351 3.649 10 O -0.388 6.388 11 N -0.329 5.329 12 C -0.031 4.031 13 C 0.012 3.988 14 N -0.322 5.322 15 C 0.020 3.980 16 C -0.379 4.379 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.556 5.556 20 Si 0.734 3.266 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.017 3.983 25 C -0.222 4.222 26 C -0.223 4.223 27 H 0.106 0.894 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.187 0.813 33 H 0.169 0.831 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.013 0.987 41 H 0.061 0.939 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.136 1.489 21.828 24.112 hybrid contribution -0.479 -0.388 -2.079 2.168 sum 9.657 1.102 19.749 22.011 Atomic orbital electron populations 1.22753 0.80549 1.03023 1.00037 1.87982 1.19844 1.25994 1.95350 1.20675 0.86195 0.86251 1.01276 1.23945 0.99673 1.08371 0.97220 1.82897 0.95078 1.69869 1.07150 1.25458 1.02450 1.11153 0.97188 1.21212 0.94317 1.02166 0.96364 1.20367 0.92985 1.06484 0.94283 1.17683 0.82473 0.81113 0.83660 1.90887 1.30509 1.39159 1.78255 1.48196 1.34288 1.35289 1.15132 1.22584 0.96524 1.03444 0.80539 1.21296 0.93157 0.95516 0.88798 1.43955 1.37637 1.39690 1.10900 1.20818 0.98030 0.88344 0.90815 1.19284 1.04519 1.22512 0.91576 0.91377 1.25062 0.98430 0.99492 0.96531 1.70050 1.34928 1.50499 1.00141 0.86178 0.82858 0.79328 0.78223 1.20286 1.21716 1.21660 1.21357 0.86897 0.90469 0.99612 1.22175 0.97565 1.01915 1.00580 1.22298 1.01357 0.95232 1.03422 0.89399 0.94377 0.93385 0.91111 0.92321 0.81296 0.83134 0.91198 0.89708 0.94056 0.93963 0.95194 0.93812 0.98691 0.93889 0.88714 0.91444 0.91630 0.92446 0.92405 0.91963 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.37 -5.80 10.69 -35.23 -0.38 -6.17 16 3 C 0.13 1.85 5.80 36.00 0.21 2.06 16 4 C -0.17 -2.31 5.97 -35.11 -0.21 -2.52 16 5 S 0.18 1.77 22.97 -107.50 -2.47 -0.70 16 6 C -0.23 -2.01 11.12 28.86 0.32 -1.69 16 7 C -0.11 -1.21 7.95 -39.02 -0.31 -1.52 16 8 C -0.12 -1.77 4.96 -104.62 -0.52 -2.29 16 9 C 0.57 10.11 6.64 -12.62 -0.08 10.03 16 10 O -0.51 -11.51 16.25 5.24 0.09 -11.43 16 11 N -0.60 -9.70 2.40 -167.45 -0.40 -10.10 16 12 C 0.09 1.85 5.24 -4.04 -0.02 1.83 16 13 C 0.14 3.02 5.76 -4.04 -0.02 2.99 16 14 N -0.60 -15.42 2.92 -181.11 -0.53 -15.95 16 15 C 0.16 4.06 9.01 59.85 0.54 4.60 16 16 C -0.25 -7.12 9.66 -15.06 -0.15 -7.27 16 17 H 0.07 1.97 7.84 -52.49 -0.41 1.56 16 18 C 0.00 0.08 5.18 -17.43 -0.09 -0.01 16 19 N -0.91 -26.90 10.56 55.49 0.59 -26.31 16 20 Si 0.90 22.73 29.56 -169.99 -5.03 17.70 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 C 0.12 1.47 2.81 -67.93 -0.19 1.28 16 25 C -0.16 -1.79 9.13 37.16 0.34 -1.46 16 26 C -0.17 -1.92 8.27 37.16 0.31 -1.61 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.09 7.57 -51.93 -0.39 0.70 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.15 1.41 7.60 -52.49 -0.40 1.02 16 34 H 0.07 1.36 6.32 -51.93 -0.33 1.03 16 35 H 0.08 2.03 7.37 -51.93 -0.38 1.65 16 36 H 0.04 0.95 8.04 -51.93 -0.42 0.53 16 37 H 0.04 0.81 5.14 -51.93 -0.27 0.54 16 38 H 0.03 0.79 7.33 -51.93 -0.38 0.41 16 39 H 0.04 1.16 7.31 -51.93 -0.38 0.78 16 40 H -0.01 -0.12 7.83 -51.93 -0.41 -0.52 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.10 1.02 4.19 -51.93 -0.22 0.80 16 43 H 0.07 0.85 6.59 -51.93 -0.34 0.50 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.95 6.10 -51.93 -0.32 0.63 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -34.12 395.93 -8.51 -42.63 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.58 Total: -1.59 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 1.23 Total: 5.95 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.34 Total: -52.36 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.29 Total: -17.60 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.03 Total: 17.70 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.47 Total: -0.70 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.12 -8.51 -42.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734552034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.519 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds