Wall clock time and date at job start Sat Apr 11 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42893 * 114.00509 * 2 1 4 4 C 1.50698 * 109.47811 * 180.02562 * 3 2 1 5 5 S 1.70444 * 124.59086 * 270.02847 * 4 3 2 6 6 C 1.75514 * 92.44446 * 179.97438 * 5 4 3 7 7 C 1.32766 * 110.57646 * 359.97438 * 6 5 4 8 8 C 1.36006 * 124.59116 * 89.71925 * 4 3 2 9 9 C 1.47194 * 123.46394 * 359.97438 * 8 4 3 10 10 O 1.21639 * 120.00086 * 306.40340 * 9 8 4 11 11 N 1.34783 * 120.00165 * 126.39541 * 9 8 4 12 12 C 1.46501 * 119.99928 * 183.90501 * 11 9 8 13 13 C 1.52999 * 109.46867 * 90.00170 * 12 11 9 14 14 N 1.46501 * 109.46867 * 179.97438 * 13 12 11 15 15 C 1.46510 * 119.99834 * 270.00139 * 14 13 12 16 16 C 1.36930 * 120.00155 * 90.00145 * 14 13 12 17 17 H 1.07994 * 120.00322 * 24.26229 * 16 14 13 18 18 C 1.38822 * 119.99856 * 204.26450 * 16 14 13 19 19 N 1.31613 * 120.00083 * 8.83573 * 18 16 14 20 20 Si 1.86805 * 119.99656 * 188.83739 * 18 16 14 21 21 H 1.48494 * 109.47253 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46913 * 120.00210 * 20 18 16 23 23 H 1.48500 * 109.46819 * 239.99721 * 20 18 16 24 24 C 1.46501 * 119.99684 * 3.90842 * 11 9 8 25 25 C 1.52998 * 109.46814 * 122.12583 * 24 11 9 26 26 C 1.53006 * 109.46803 * 242.12152 * 24 11 9 27 27 H 1.09000 * 109.47301 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47155 * 299.99950 * 1 2 3 29 29 H 1.09001 * 109.47340 * 59.99859 * 1 2 3 30 30 H 1.09007 * 109.47012 * 300.00482 * 3 2 1 31 31 H 1.09003 * 109.47066 * 59.99593 * 3 2 1 32 32 H 1.07996 * 124.71248 * 180.02562 * 6 5 4 33 33 H 1.07998 * 123.46270 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.46778 * 210.00296 * 12 11 9 35 35 H 1.08996 * 109.47089 * 330.00086 * 12 11 9 36 36 H 1.09002 * 109.47525 * 299.99669 * 13 12 11 37 37 H 1.08996 * 109.47335 * 60.00067 * 13 12 11 38 38 H 1.09001 * 109.47309 * 95.07784 * 15 14 13 39 39 H 1.08996 * 109.46881 * 215.07365 * 15 14 13 40 40 H 1.09001 * 109.46889 * 335.07888 * 15 14 13 41 41 H 0.96999 * 119.99852 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.47364 * 2.12390 * 24 11 9 43 43 H 1.08999 * 109.47313 * 59.99775 * 25 24 11 44 44 H 1.09007 * 109.46481 * 179.97438 * 25 24 11 45 45 H 1.08999 * 109.47087 * 299.99292 * 25 24 11 46 46 H 1.09003 * 109.46731 * 60.00677 * 26 24 11 47 47 H 1.08998 * 109.46809 * 179.97438 * 26 24 11 48 48 H 1.08999 * 109.47354 * 300.00243 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5125 1.1864 -0.0006 5 16 4.4777 1.1091 1.4021 6 6 5.9587 0.9916 0.4676 7 6 5.6927 1.0127 -0.8330 8 6 4.2814 1.1202 -1.1206 9 6 3.7319 1.1566 -2.4856 10 8 2.8603 0.3732 -2.8115 11 7 4.1943 2.0582 -3.3744 12 6 3.5889 2.1518 -4.7052 13 6 2.4363 3.1574 -4.6715 14 7 1.8313 3.2514 -6.0025 15 6 2.3343 4.2317 -6.9682 16 6 0.7958 2.4232 -6.3440 17 1 0.1707 1.9947 -5.5746 18 6 0.5495 2.1342 -7.6793 19 7 1.4080 2.5103 -8.6032 20 14 -1.0005 1.2114 -8.1646 21 1 -1.7953 0.9047 -6.9483 22 1 -1.8088 2.0510 -9.0848 23 1 -0.6297 -0.0546 -8.8466 24 6 5.3023 2.9445 -3.0096 25 6 6.4546 2.7535 -3.9979 26 6 4.8281 4.3985 -3.0539 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8463 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 6.9488 0.9123 0.8916 33 1 6.4532 0.9520 -1.5974 34 1 4.3393 2.4830 -5.4232 35 1 3.2094 1.1739 -5.0013 36 1 1.6860 2.8262 -3.9536 37 1 2.8158 4.1353 -4.3754 38 1 3.0662 3.7561 -7.6211 39 1 1.5057 4.6105 -7.5664 40 1 2.8054 5.0578 -6.4354 41 1 1.2361 2.3080 -9.5361 42 1 5.6435 2.7041 -2.0027 43 1 6.1133 2.9939 -5.0048 44 1 7.2788 3.4133 -3.7267 45 1 6.7924 1.7177 -3.9663 46 1 4.0072 4.5345 -2.3498 47 1 5.6523 5.0579 -2.7821 48 1 4.4868 4.6389 -4.0608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734552034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:45 Heat of formation + Delta-G solvation = -33.904197 kcal Electronic energy + Delta-G solvation = -28935.606491 eV Core-core repulsion = 25118.093813 eV Total energy + Delta-G solvation = -3817.512678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.46301 -39.12899 -38.16731 -37.76459 -37.09892 -33.71502 -32.55215 -32.26183 -30.32628 -28.32849 -28.07151 -27.90420 -26.87358 -25.45697 -24.13441 -23.18232 -22.36455 -21.28141 -19.59940 -18.85458 -18.59801 -17.89587 -17.53295 -17.18578 -16.93273 -16.48659 -16.03757 -15.94713 -15.57496 -15.44617 -15.04621 -14.96674 -14.54680 -14.52217 -14.18134 -13.99266 -13.79090 -13.62084 -13.27784 -13.24579 -13.17268 -12.89169 -12.81986 -12.79124 -12.73607 -12.42833 -12.41122 -12.17523 -12.08510 -12.05096 -12.00406 -11.71893 -11.42422 -10.91621 -10.75839 -10.72035 -9.95551 -9.79988 -9.28104 -8.78179 -7.88161 -5.37905 -0.23993 0.53646 0.91685 1.13639 1.39440 1.41507 1.51970 1.81862 2.11541 2.47424 2.88252 3.26166 3.56754 3.65703 3.72371 3.90596 3.91685 4.12938 4.16314 4.21282 4.33097 4.38742 4.41500 4.44919 4.49914 4.54109 4.54976 4.70775 4.75469 4.80242 4.81862 4.85323 4.95368 4.98885 5.04119 5.08407 5.11471 5.25501 5.29704 5.39160 5.40437 5.57149 5.63975 5.70933 6.05144 6.29425 6.46592 7.11992 7.17682 7.81367 8.23265 9.14463 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003804 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.448561 B = 7358.936886 C = 9025.804917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.401 6.401 3 C 0.132 3.868 4 C -0.202 4.202 5 S 0.247 5.753 6 C -0.205 4.205 7 C -0.127 4.127 8 C -0.146 4.146 9 C 0.561 3.439 10 O -0.576 6.576 11 N -0.591 5.591 12 C 0.115 3.885 13 C 0.149 3.851 14 N -0.615 5.615 15 C 0.179 3.821 16 C -0.264 4.264 17 H 0.053 0.947 18 C -0.044 4.044 19 N -0.932 5.932 20 Si 0.964 3.036 21 H -0.275 1.275 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.115 3.885 25 C -0.160 4.160 26 C -0.163 4.163 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.027 0.973 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.211 0.789 33 H 0.166 0.834 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.009 0.991 39 H 0.018 0.982 40 H 0.034 0.966 41 H 0.250 0.750 42 H 0.119 0.881 43 H 0.046 0.954 44 H 0.100 0.900 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.097 0.903 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.267 2.995 23.624 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.321 6.321 3 C 0.054 3.946 4 C -0.322 4.322 5 S 0.514 5.486 6 C -0.340 4.340 7 C -0.155 4.155 8 C -0.165 4.165 9 C 0.349 3.651 10 O -0.456 6.456 11 N -0.323 5.323 12 C -0.011 4.011 13 C 0.022 3.978 14 N -0.339 5.339 15 C 0.035 3.965 16 C -0.395 4.395 17 H 0.071 0.929 18 C -0.240 4.240 19 N -0.579 5.579 20 Si 0.792 3.208 21 H -0.200 1.200 22 H -0.207 1.207 23 H -0.217 1.217 24 C 0.013 3.987 25 C -0.218 4.218 26 C -0.220 4.220 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.228 0.772 33 H 0.183 0.817 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.035 0.965 37 H 0.091 0.909 38 H 0.027 0.973 39 H 0.037 0.963 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.136 0.864 43 H 0.065 0.935 44 H 0.119 0.881 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.116 0.884 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.610 2.471 24.826 27.954 hybrid contribution -1.188 -0.661 -2.838 3.147 sum 11.421 1.809 21.987 24.843 Atomic orbital electron populations 1.22892 0.79368 1.03911 1.00523 1.87927 1.21386 1.27271 1.95467 1.20733 0.87119 0.85604 1.01143 1.24182 0.99822 1.08933 0.99225 1.82682 0.94006 1.67692 1.04230 1.25952 1.03920 1.07930 0.96200 1.21233 0.92557 1.03873 0.97854 1.20259 0.95087 1.09047 0.92060 1.18361 0.81460 0.80117 0.85194 1.90843 1.33395 1.41684 1.79641 1.48208 1.34950 1.35742 1.13370 1.21931 0.96200 0.99989 0.82932 1.21298 0.92843 0.97314 0.86363 1.44139 1.37802 1.39743 1.12188 1.20596 0.96533 0.88868 0.90540 1.19402 1.05518 1.22959 0.91606 0.92875 1.25739 1.01269 1.00529 0.96416 1.70187 1.36221 1.51327 1.00141 0.85255 0.79674 0.78035 0.77832 1.20007 1.20736 1.21687 1.21744 0.85736 0.89948 1.01255 1.22166 0.97898 1.02812 0.98939 1.22279 1.02484 0.95246 1.02036 0.88416 0.91302 0.95389 0.94365 0.89266 0.77208 0.81695 0.90508 0.94715 0.96480 0.90912 0.97287 0.96346 0.94748 0.94057 0.86358 0.93501 0.88097 0.92493 0.93098 0.88426 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.98 16 2 O -0.40 -12.88 10.69 -148.98 -1.59 -14.47 16 3 C 0.13 3.71 5.80 71.24 0.41 4.12 16 4 C -0.20 -5.23 5.97 25.17 0.15 -5.08 16 5 S 0.25 3.90 22.97 -56.49 -1.30 2.60 16 6 C -0.20 -2.67 11.12 66.64 0.74 -1.93 16 7 C -0.13 -2.40 7.95 22.67 0.18 -2.22 16 8 C -0.15 -4.11 4.96 -19.87 -0.10 -4.21 16 9 C 0.56 21.07 6.64 86.59 0.57 21.65 16 10 O -0.58 -28.10 16.25 -4.16 -0.07 -28.17 16 11 N -0.59 -19.83 2.40 -801.92 -1.92 -21.75 16 12 C 0.11 4.84 5.24 86.38 0.45 5.29 16 13 C 0.15 6.68 5.76 86.38 0.50 7.18 16 14 N -0.61 -32.92 2.92 -726.92 -2.12 -35.04 16 15 C 0.18 9.02 9.01 127.77 1.15 10.17 16 16 C -0.26 -15.82 9.66 84.04 0.81 -15.01 16 17 H 0.05 3.27 7.84 -2.91 -0.02 3.25 16 18 C -0.04 -2.61 5.18 84.87 0.44 -2.17 16 19 N -0.93 -56.66 10.56 21.65 0.23 -56.43 16 20 Si 0.96 48.12 29.56 68.60 2.03 50.15 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 24 C 0.12 2.61 2.81 44.99 0.13 2.74 16 25 C -0.16 -3.16 9.13 71.98 0.66 -2.50 16 26 C -0.16 -3.42 8.27 71.98 0.60 -2.83 16 27 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 1.28 7.57 -2.38 -0.02 1.27 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.21 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.17 2.57 7.60 -2.91 -0.02 2.55 16 34 H 0.08 3.10 6.32 -2.39 -0.02 3.09 16 35 H 0.03 1.80 7.37 -2.39 -0.02 1.79 16 36 H 0.02 0.83 8.04 -2.39 -0.02 0.81 16 37 H 0.07 2.80 5.14 -2.39 -0.01 2.79 16 38 H 0.01 0.48 7.33 -2.39 -0.02 0.46 16 39 H 0.02 0.98 7.31 -2.39 -0.02 0.96 16 40 H 0.03 1.43 7.83 -2.39 -0.02 1.41 16 41 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 42 H 0.12 2.22 4.19 -2.39 -0.01 2.21 16 43 H 0.05 1.12 6.59 -2.39 -0.02 1.11 16 44 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.05 1.29 6.10 -2.39 -0.01 1.27 16 Total: -1.00 -80.64 395.93 4.14 -76.50 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.95 Total: 9.41 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 7.94 Total: 17.20 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -3.82 Total: -113.23 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -1.66 Total: -42.64 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.30 Total: 2.60 kcal Total: -80.64 4.14 -76.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734552034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.596 kcal (2) G-P(sol) polarization free energy of solvation -80.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds