Wall clock time and date at job start Sat Apr 11 2020 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47362 * 2 1 4 4 H 1.08994 * 109.99636 * 55.17678 * 3 2 1 5 5 C 1.54325 * 109.87690 * 294.08331 * 3 2 1 6 6 H 1.09004 * 110.72218 * 21.31766 * 5 3 2 7 7 N 1.46509 * 110.71593 * 144.41123 * 5 3 2 8 8 C 1.34773 * 119.99530 * 202.55488 * 7 5 3 9 9 O 1.21277 * 120.00654 * 0.02562 * 8 7 5 10 10 C 1.50705 * 119.99629 * 180.02562 * 8 7 5 11 11 S 1.81003 * 109.47152 * 180.02562 * 10 8 7 12 12 C 1.76199 * 99.99884 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00130 * 359.97438 * 12 11 10 14 14 C 1.38805 * 119.99765 * 179.72365 * 12 11 10 15 15 N 1.31625 * 119.99799 * 0.27200 * 14 12 11 16 16 Si 1.86803 * 119.99687 * 180.27384 * 14 12 11 17 17 H 1.48492 * 109.47023 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46796 * 119.99927 * 16 14 12 19 19 H 1.48498 * 109.46661 * 239.99640 * 16 14 12 20 20 C 1.55153 * 103.10252 * 262.86492 * 5 3 2 21 21 C 1.54912 * 101.58264 * 324.41129 * 20 5 3 22 22 N 1.47422 * 104.82827 * 37.00748 * 21 20 5 23 23 C 1.34782 * 125.64376 * 155.84641 * 22 21 20 24 24 O 1.21282 * 120.00130 * 174.93648 * 23 22 21 25 25 C 1.50700 * 119.99943 * 354.93597 * 23 22 21 26 26 H 1.09001 * 115.55050 * 34.41771 * 25 23 22 27 27 C 1.52999 * 117.49973 * 248.74784 * 25 23 22 28 28 C 1.53003 * 117.49781 * 180.08497 * 25 23 22 29 29 H 1.08998 * 117.49938 * 0.02562 * 28 25 23 30 30 C 1.52991 * 117.50028 * 214.97881 * 28 25 23 31 31 H 1.08998 * 109.46922 * 65.68672 * 1 2 3 32 32 H 1.09002 * 109.47703 * 185.69094 * 1 2 3 33 33 H 1.09003 * 109.47080 * 305.69147 * 1 2 3 34 34 H 1.08994 * 109.47254 * 239.99013 * 2 1 3 35 35 H 1.09002 * 109.46885 * 119.99655 * 2 1 3 36 36 H 0.96993 * 119.99679 * 22.56684 * 7 5 3 37 37 H 1.09003 * 109.47009 * 60.00616 * 10 8 7 38 38 H 1.09006 * 109.47249 * 300.00409 * 10 8 7 39 39 H 0.97003 * 119.99466 * 179.97438 * 15 14 12 40 40 H 1.08995 * 111.00635 * 82.48758 * 20 5 3 41 41 H 1.09002 * 111.00193 * 206.33417 * 20 5 3 42 42 H 1.08996 * 110.36428 * 155.84907 * 21 20 5 43 43 H 1.09005 * 110.36435 * 278.06222 * 21 20 5 44 44 H 1.09002 * 117.49639 * 359.97438 * 27 25 23 45 45 H 1.08997 * 117.50195 * 145.02423 * 27 25 23 46 46 H 1.08996 * 109.47433 * 60.00212 * 30 28 25 47 47 H 1.09001 * 109.47284 * 180.02562 * 30 28 25 48 48 H 1.09001 * 109.47431 * 300.00022 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6129 1.9889 0.8408 5 6 1.6566 2.1346 -1.3250 6 1 0.8198 1.6222 -1.7997 7 7 1.3366 3.5463 -1.0986 8 6 0.5629 4.2114 -1.9792 9 8 0.1313 3.6413 -2.9588 10 6 0.2342 5.6636 -1.7467 11 16 -0.8142 6.2680 -3.0927 12 6 -1.0369 7.9391 -2.5804 13 1 -0.5763 8.2904 -1.6689 14 6 -1.8001 8.8053 -3.3509 15 7 -2.3619 8.3770 -4.4616 16 14 -2.0299 10.5790 -2.8117 17 1 -1.3008 10.8076 -1.5385 18 1 -1.4953 11.4876 -3.8577 19 1 -3.4757 10.8519 -2.6109 20 6 2.9432 1.9937 -2.1806 21 6 4.0491 2.1410 -1.1058 22 7 3.5123 1.4560 0.0842 23 6 4.2458 0.9280 1.0841 24 8 3.6955 0.4670 2.0617 25 6 5.7496 0.9103 0.9874 26 1 6.1980 1.7639 0.4790 27 6 6.4308 -0.4494 0.8201 28 6 6.5253 0.2955 2.1541 29 1 5.9480 -0.0966 2.9914 30 6 7.8713 0.9254 2.5175 31 1 -0.3633 0.4231 -0.9365 32 1 -0.3634 -1.0226 0.1019 33 1 -0.3633 0.5996 0.8347 34 1 1.8933 -0.5139 -0.8898 35 1 1.8933 -0.5138 0.8900 36 1 1.6816 4.0021 -0.3150 37 1 1.1561 6.2443 -1.7151 38 1 -0.2945 5.7693 -0.7993 39 1 -2.8955 8.9823 -4.9998 40 1 2.9899 1.0149 -2.6577 41 1 3.0093 2.7910 -2.9210 42 1 4.9682 1.6589 -1.4388 43 1 4.2305 3.1939 -0.8899 44 1 5.7913 -1.3312 0.7804 45 1 7.3277 -0.4903 0.2020 46 1 7.7219 1.9702 2.7898 47 1 8.3080 0.3889 3.3599 48 1 8.5435 0.8656 1.6615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736184427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:52 Heat of formation + Delta-G solvation = -56.473770 kcal Electronic energy + Delta-G solvation = -27306.278919 eV Core-core repulsion = 23487.787551 eV Total energy + Delta-G solvation = -3818.491369 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94896 -39.49824 -38.14855 -36.75672 -34.03510 -33.67797 -32.45342 -31.15551 -29.22967 -29.15249 -27.60402 -25.53714 -24.97173 -23.38466 -22.90051 -21.33820 -20.41995 -20.28560 -19.17540 -17.96206 -17.70715 -16.89836 -16.32900 -16.06815 -15.63739 -14.99071 -14.82777 -14.68707 -14.53662 -14.36144 -13.89464 -13.85373 -13.61638 -13.49889 -13.24525 -13.16124 -13.06711 -12.59943 -12.41029 -12.33047 -11.98045 -11.96439 -11.80732 -11.74618 -11.55853 -11.36839 -11.08926 -11.04539 -10.80028 -10.77478 -10.71806 -10.48303 -10.01235 -9.83013 -9.48313 -9.10716 -9.02296 -8.94003 -8.26781 -6.52964 -6.24422 -3.94967 2.17755 2.53220 2.96058 2.99628 3.19893 3.26114 3.30518 3.40895 3.64334 3.95850 4.17883 4.24256 4.31156 4.35392 4.39849 4.70608 4.72051 4.77590 4.89845 4.93967 4.95701 5.07758 5.11074 5.12605 5.19530 5.24304 5.28491 5.33968 5.37367 5.44484 5.50948 5.58551 5.63185 5.68093 5.74395 5.80452 5.85174 5.87482 5.89759 5.93645 5.99144 6.10395 6.20210 6.54935 7.19122 7.57466 7.60774 7.87986 8.32996 8.52415 9.21324 10.83013 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.002178 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.709812 B =12854.888916 C =13660.454626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.133 3.867 4 H 0.084 0.916 5 C 0.137 3.863 6 H 0.114 0.886 7 N -0.731 5.731 8 C 0.535 3.465 9 O -0.514 6.514 10 C -0.154 4.154 11 S -0.059 6.059 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.144 4.144 21 C 0.099 3.901 22 N -0.613 5.613 23 C 0.561 3.439 24 O -0.538 6.538 25 C -0.189 4.189 26 H 0.122 0.878 27 C -0.147 4.147 28 C -0.122 4.122 29 H 0.117 0.883 30 C -0.124 4.124 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.756 -17.401 10.873 27.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.030 3.970 4 H 0.102 0.898 5 C 0.031 3.969 6 H 0.131 0.869 7 N -0.386 5.386 8 C 0.322 3.678 9 O -0.388 6.388 10 C -0.305 4.305 11 S 0.167 5.833 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.184 4.184 21 C -0.024 4.024 22 N -0.347 5.347 23 C 0.350 3.650 24 O -0.415 6.415 25 C -0.210 4.210 26 H 0.140 0.860 27 C -0.185 4.185 28 C -0.140 4.140 29 H 0.135 0.865 30 C -0.181 4.181 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.665 -18.571 9.660 27.391 hybrid contribution 0.527 2.215 1.689 2.835 sum 18.192 -16.356 11.349 26.968 Atomic orbital electron populations 1.21798 0.94574 1.02134 1.02530 1.21778 0.96627 0.95149 1.03221 1.21987 0.79938 0.97319 0.97781 0.89810 1.21935 0.98277 0.82698 0.93960 0.86859 1.46039 1.53954 1.10822 1.27736 1.20325 0.76855 0.88493 0.82162 1.90706 1.51091 1.68982 1.27992 1.23541 1.05476 0.94153 1.07293 1.85386 1.61139 1.10401 1.26329 1.22903 1.37579 0.95773 1.12075 0.90884 1.24997 0.94764 0.99297 0.94558 1.70024 1.31166 1.35915 1.13142 0.86116 0.78121 0.82625 0.78633 1.19624 1.20560 1.20548 1.23229 0.93846 1.03889 0.97389 1.22399 0.97788 0.97368 0.84830 1.48633 1.06666 1.57423 1.22000 1.19314 0.87699 0.76845 0.81153 1.90694 1.73073 1.47036 1.30714 1.22284 0.91444 1.00007 1.07267 0.85974 1.23114 1.01976 0.93329 1.00066 1.22404 0.97688 1.01430 0.92524 0.86490 1.21404 0.94142 1.00765 1.01807 0.92008 0.92248 0.92381 0.91562 0.90312 0.76744 0.89216 0.89187 0.92222 0.89625 0.88810 0.90222 0.90982 0.88299 0.87723 0.91875 0.91615 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.64 37.16 0.36 -1.11 16 2 C -0.13 -1.28 5.45 -26.73 -0.15 -1.43 16 3 C 0.13 1.35 2.59 -66.70 -0.17 1.18 16 4 H 0.08 0.93 7.98 -51.93 -0.41 0.52 16 5 C 0.14 1.50 2.64 -66.09 -0.17 1.33 16 6 H 0.11 1.41 5.71 -51.93 -0.30 1.12 16 7 N -0.73 -9.07 5.12 -52.03 -0.27 -9.33 16 8 C 0.54 9.31 7.85 -10.98 -0.09 9.22 16 9 O -0.51 -10.88 15.55 5.56 0.09 -10.79 16 10 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 11 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 12 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16 13 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 14 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 15 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 16 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.14 -1.33 6.77 -24.58 -0.17 -1.50 16 21 C 0.10 0.76 6.50 -2.53 -0.02 0.74 16 22 N -0.61 -5.82 3.09 -162.67 -0.50 -6.32 16 23 C 0.56 5.99 7.36 -10.98 -0.08 5.91 16 24 O -0.54 -7.55 15.31 5.56 0.09 -7.47 16 25 C -0.19 -1.46 5.01 -91.77 -0.46 -1.92 16 26 H 0.12 0.76 7.61 -51.93 -0.40 0.37 16 27 C -0.15 -0.94 9.88 -26.69 -0.26 -1.21 16 28 C -0.12 -0.89 5.92 -90.58 -0.54 -1.42 16 29 H 0.12 1.04 7.67 -51.93 -0.40 0.64 16 30 C -0.12 -0.66 10.19 37.15 0.38 -0.28 16 31 H 0.06 0.63 6.61 -51.93 -0.34 0.29 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.90 6.79 -51.93 -0.35 0.55 16 36 H 0.40 4.11 8.57 -40.82 -0.35 3.76 16 37 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 38 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 0.48 7.48 -51.93 -0.39 0.09 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.48 8.05 -51.93 -0.42 0.06 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.06 0.26 7.90 -51.93 -0.41 -0.15 16 LS Contribution 404.73 15.07 6.10 6.10 Total: -1.00 -34.51 404.73 -9.91 -44.41 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.96 Total: 2.10 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -0.95 Total: -6.00 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -0.04 Total: -40.78 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.17 Total: -18.26 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.51 -9.91 -44.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736184427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.060 kcal (2) G-P(sol) polarization free energy of solvation -34.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds