Wall clock time and date at job start Sat Apr 11 2020 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47362 * 2 1 4 4 H 1.08994 * 109.99636 * 55.17678 * 3 2 1 5 5 C 1.54325 * 109.87690 * 294.08331 * 3 2 1 6 6 H 1.09004 * 110.72218 * 21.31766 * 5 3 2 7 7 N 1.46509 * 110.71593 * 144.41123 * 5 3 2 8 8 C 1.34773 * 119.99530 * 202.55488 * 7 5 3 9 9 O 1.21277 * 120.00654 * 0.02562 * 8 7 5 10 10 C 1.50705 * 119.99629 * 180.02562 * 8 7 5 11 11 S 1.81003 * 109.47152 * 180.02562 * 10 8 7 12 12 C 1.76199 * 99.99884 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00130 * 359.97438 * 12 11 10 14 14 C 1.38805 * 119.99765 * 179.72365 * 12 11 10 15 15 N 1.31625 * 119.99799 * 0.27200 * 14 12 11 16 16 Si 1.86803 * 119.99687 * 180.27384 * 14 12 11 17 17 H 1.48492 * 109.47023 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46796 * 119.99927 * 16 14 12 19 19 H 1.48498 * 109.46661 * 239.99640 * 16 14 12 20 20 C 1.55153 * 103.10252 * 262.86492 * 5 3 2 21 21 C 1.54912 * 101.58264 * 324.41129 * 20 5 3 22 22 N 1.47422 * 104.82827 * 37.00748 * 21 20 5 23 23 C 1.34782 * 125.64376 * 155.84641 * 22 21 20 24 24 O 1.21282 * 120.00130 * 174.93648 * 23 22 21 25 25 C 1.50700 * 119.99943 * 354.93597 * 23 22 21 26 26 H 1.09001 * 115.55050 * 34.41771 * 25 23 22 27 27 C 1.52999 * 117.49973 * 248.74784 * 25 23 22 28 28 C 1.53003 * 117.49781 * 180.08497 * 25 23 22 29 29 H 1.08998 * 117.49938 * 0.02562 * 28 25 23 30 30 C 1.52991 * 117.50028 * 214.97881 * 28 25 23 31 31 H 1.08998 * 109.46922 * 65.68672 * 1 2 3 32 32 H 1.09002 * 109.47703 * 185.69094 * 1 2 3 33 33 H 1.09003 * 109.47080 * 305.69147 * 1 2 3 34 34 H 1.08994 * 109.47254 * 239.99013 * 2 1 3 35 35 H 1.09002 * 109.46885 * 119.99655 * 2 1 3 36 36 H 0.96993 * 119.99679 * 22.56684 * 7 5 3 37 37 H 1.09003 * 109.47009 * 60.00616 * 10 8 7 38 38 H 1.09006 * 109.47249 * 300.00409 * 10 8 7 39 39 H 0.97003 * 119.99466 * 179.97438 * 15 14 12 40 40 H 1.08995 * 111.00635 * 82.48758 * 20 5 3 41 41 H 1.09002 * 111.00193 * 206.33417 * 20 5 3 42 42 H 1.08996 * 110.36428 * 155.84907 * 21 20 5 43 43 H 1.09005 * 110.36435 * 278.06222 * 21 20 5 44 44 H 1.09002 * 117.49639 * 359.97438 * 27 25 23 45 45 H 1.08997 * 117.50195 * 145.02423 * 27 25 23 46 46 H 1.08996 * 109.47433 * 60.00212 * 30 28 25 47 47 H 1.09001 * 109.47284 * 180.02562 * 30 28 25 48 48 H 1.09001 * 109.47431 * 300.00022 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6129 1.9889 0.8408 5 6 1.6566 2.1346 -1.3250 6 1 0.8198 1.6222 -1.7997 7 7 1.3366 3.5463 -1.0986 8 6 0.5629 4.2114 -1.9792 9 8 0.1313 3.6413 -2.9588 10 6 0.2342 5.6636 -1.7467 11 16 -0.8142 6.2680 -3.0927 12 6 -1.0369 7.9391 -2.5804 13 1 -0.5763 8.2904 -1.6689 14 6 -1.8001 8.8053 -3.3509 15 7 -2.3619 8.3770 -4.4616 16 14 -2.0299 10.5790 -2.8117 17 1 -1.3008 10.8076 -1.5385 18 1 -1.4953 11.4876 -3.8577 19 1 -3.4757 10.8519 -2.6109 20 6 2.9432 1.9937 -2.1806 21 6 4.0491 2.1410 -1.1058 22 7 3.5123 1.4560 0.0842 23 6 4.2458 0.9280 1.0841 24 8 3.6955 0.4670 2.0617 25 6 5.7496 0.9103 0.9874 26 1 6.1980 1.7639 0.4790 27 6 6.4308 -0.4494 0.8201 28 6 6.5253 0.2955 2.1541 29 1 5.9480 -0.0966 2.9914 30 6 7.8713 0.9254 2.5175 31 1 -0.3633 0.4231 -0.9365 32 1 -0.3634 -1.0226 0.1019 33 1 -0.3633 0.5996 0.8347 34 1 1.8933 -0.5139 -0.8898 35 1 1.8933 -0.5138 0.8900 36 1 1.6816 4.0021 -0.3150 37 1 1.1561 6.2443 -1.7151 38 1 -0.2945 5.7693 -0.7993 39 1 -2.8955 8.9823 -4.9998 40 1 2.9899 1.0149 -2.6577 41 1 3.0093 2.7910 -2.9210 42 1 4.9682 1.6589 -1.4388 43 1 4.2305 3.1939 -0.8899 44 1 5.7913 -1.3312 0.7804 45 1 7.3277 -0.4903 0.2020 46 1 7.7219 1.9702 2.7898 47 1 8.3080 0.3889 3.3599 48 1 8.5435 0.8656 1.6615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001736184427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:52 Heat of formation + Delta-G solvation = -78.443790 kcal Electronic energy + Delta-G solvation = -27307.231611 eV Core-core repulsion = 23487.787551 eV Total energy + Delta-G solvation = -3819.444060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.82022 -40.59755 -39.13661 -37.49815 -35.14932 -34.58253 -34.54143 -32.20316 -30.46133 -29.70128 -28.49233 -27.64792 -25.76418 -24.18852 -23.68076 -22.01384 -21.55706 -21.14953 -19.99407 -19.74880 -18.58525 -17.94178 -17.70512 -16.89338 -16.87372 -16.59763 -16.27116 -16.00260 -15.29167 -15.23640 -15.04810 -14.80306 -14.59984 -14.40975 -14.31552 -14.13443 -13.96318 -13.67178 -13.66661 -13.15532 -12.92670 -12.91980 -12.78907 -12.76017 -12.65282 -12.61940 -12.49798 -12.31470 -12.16347 -11.71579 -11.57532 -11.34250 -11.15692 -11.03426 -10.96071 -10.78721 -10.26701 -10.17087 -9.76238 -8.65186 -8.34822 -6.11843 1.26399 1.41101 1.41194 1.46661 1.57446 1.59172 1.78654 2.21113 2.28000 2.84224 2.99536 3.18477 3.31797 3.47179 3.63213 3.77896 3.82779 3.88822 3.94014 3.99883 4.12956 4.16576 4.22653 4.30056 4.33169 4.42375 4.49278 4.52310 4.55168 4.71096 4.72828 4.85155 4.87511 4.94485 4.94885 4.99519 5.02149 5.06335 5.11448 5.18425 5.21806 5.34900 5.42417 5.42707 5.47728 6.20262 6.39812 6.45713 7.07113 7.07857 7.20215 8.74407 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.002178 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.709812 B =12854.888916 C =13660.454626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.138 3.862 4 H 0.074 0.926 5 C 0.136 3.864 6 H 0.099 0.901 7 N -0.707 5.707 8 C 0.542 3.458 9 O -0.556 6.556 10 C -0.132 4.132 11 S -0.145 6.145 12 C -0.546 4.546 13 H 0.081 0.919 14 C 0.013 3.987 15 N -0.910 5.910 16 Si 0.997 3.003 17 H -0.258 1.258 18 H -0.273 1.273 19 H -0.275 1.275 20 C -0.139 4.139 21 C 0.102 3.898 22 N -0.610 5.610 23 C 0.555 3.445 24 O -0.580 6.580 25 C -0.193 4.193 26 H 0.144 0.856 27 C -0.133 4.133 28 C -0.130 4.130 29 H 0.092 0.908 30 C -0.119 4.119 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.412 0.588 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.271 0.729 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.131 0.869 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.184 -16.898 11.760 29.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.034 3.966 4 H 0.092 0.908 5 C 0.030 3.970 6 H 0.117 0.883 7 N -0.360 5.360 8 C 0.328 3.672 9 O -0.434 6.434 10 C -0.283 4.283 11 S 0.082 5.918 12 C -0.693 4.693 13 H 0.099 0.901 14 C -0.191 4.191 15 N -0.547 5.547 16 Si 0.819 3.181 17 H -0.182 1.182 18 H -0.199 1.199 19 H -0.200 1.200 20 C -0.178 4.178 21 C -0.020 4.020 22 N -0.343 5.343 23 C 0.346 3.654 24 O -0.460 6.460 25 C -0.213 4.213 26 H 0.162 0.838 27 C -0.171 4.171 28 C -0.149 4.149 29 H 0.111 0.889 30 C -0.176 4.176 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.249 0.751 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.149 0.851 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 20.136 -18.077 10.573 29.052 hybrid contribution -0.194 1.932 1.486 2.445 sum 19.942 -16.145 12.059 28.351 Atomic orbital electron populations 1.21773 0.94463 1.02648 1.01885 1.21690 0.96656 0.94848 1.02833 1.21841 0.80803 0.97183 0.96730 0.90823 1.21998 0.98921 0.81220 0.94834 0.88288 1.45750 1.52076 1.11332 1.26865 1.19948 0.77222 0.87756 0.82283 1.90700 1.53130 1.69522 1.29999 1.23384 1.04787 0.95579 1.04523 1.85527 1.63824 1.11352 1.31083 1.23231 1.37667 0.96080 1.12360 0.90055 1.26101 0.94230 1.04360 0.94457 1.70180 1.32110 1.37784 1.14582 0.84930 0.78238 0.76248 0.78687 1.18154 1.19881 1.20039 1.23191 0.93044 1.04277 0.97325 1.22520 0.98057 0.98052 0.83335 1.48665 1.06183 1.57105 1.22341 1.19887 0.88993 0.75998 0.80558 1.90678 1.74084 1.48878 1.32380 1.22335 0.89281 1.01615 1.08119 0.83788 1.23201 1.02281 0.92083 0.99500 1.22418 0.98319 1.01996 0.92146 0.88928 1.21394 0.93150 1.00458 1.02644 0.92664 0.91243 0.92904 0.90683 0.91784 0.75118 0.87142 0.87594 0.92007 0.88361 0.89821 0.87537 0.90094 0.89310 0.85092 0.92029 0.91220 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.64 71.98 0.69 -2.18 16 2 C -0.12 -2.36 5.45 30.59 0.17 -2.19 16 3 C 0.14 2.68 2.59 45.25 0.12 2.80 16 4 H 0.07 1.60 7.98 -2.39 -0.02 1.58 16 5 C 0.14 2.83 2.64 46.18 0.12 2.95 16 6 H 0.10 2.45 5.71 -2.38 -0.01 2.43 16 7 N -0.71 -16.59 5.12 -436.90 -2.24 -18.82 16 8 C 0.54 18.55 7.85 87.66 0.69 19.24 16 9 O -0.56 -23.88 15.55 -3.02 -0.05 -23.92 16 10 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 11 S -0.14 -7.84 20.57 -56.49 -1.16 -9.00 16 12 C -0.55 -30.68 9.50 67.96 0.65 -30.03 16 13 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 14 C 0.01 0.75 5.49 84.86 0.47 1.22 16 15 N -0.91 -55.24 13.22 21.65 0.29 -54.96 16 16 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 17 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 20 C -0.14 -2.29 6.77 31.99 0.22 -2.08 16 21 C 0.10 1.27 6.50 86.86 0.56 1.84 16 22 N -0.61 -10.49 3.09 -786.97 -2.43 -12.93 16 23 C 0.55 11.19 7.36 87.66 0.65 11.84 16 24 O -0.58 -16.37 15.31 -3.04 -0.05 -16.42 16 25 C -0.19 -2.54 5.01 -11.54 -0.06 -2.59 16 26 H 0.14 1.25 7.61 -2.39 -0.02 1.24 16 27 C -0.13 -1.38 9.88 30.62 0.30 -1.08 16 28 C -0.13 -1.70 5.92 -10.77 -0.06 -1.77 16 29 H 0.09 1.68 7.67 -2.39 -0.02 1.66 16 30 C -0.12 -1.01 10.19 71.98 0.73 -0.27 16 31 H 0.05 1.13 6.61 -2.39 -0.02 1.12 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.47 6.79 -2.39 -0.02 1.46 16 36 H 0.41 7.64 8.57 -92.71 -0.79 6.84 16 37 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 38 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 39 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.11 0.83 7.48 -2.39 -0.02 0.82 16 43 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.13 0.69 8.05 -2.39 -0.02 0.67 16 46 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.07 0.40 7.90 -2.39 -0.02 0.38 16 Total: -1.00 -77.55 404.73 2.23 -75.32 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.16 Total: 22.34 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 5.68 Total: -6.86 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -4.38 Total: -86.70 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -0.09 Total: -40.34 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.16 Total: -9.00 kcal Total: -77.55 2.23 -75.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736184427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.123 kcal (2) G-P(sol) polarization free energy of solvation -77.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds