Wall clock time and date at job start Sat Apr 11 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00164 * 2 1 4 4 H 1.09005 * 109.46814 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47551 * 119.99870 * 3 2 1 6 6 C 1.53003 * 109.47170 * 185.51760 * 5 3 2 7 7 C 1.52995 * 109.46986 * 239.99974 * 3 2 1 8 8 C 1.50697 * 109.47440 * 66.46779 * 7 3 2 9 9 O 1.21286 * 119.99803 * 355.96798 * 8 7 3 10 10 N 1.34777 * 120.00177 * 176.23452 * 8 7 3 11 11 C 1.46501 * 119.99904 * 179.72377 * 10 8 7 12 12 H 1.09002 * 112.85178 * 336.20491 * 11 10 8 13 13 C 1.53786 * 113.61602 * 107.50552 * 11 10 8 14 14 C 1.53779 * 87.07892 * 89.11433 * 13 11 10 15 15 H 1.09001 * 113.69602 * 270.87624 * 14 13 11 16 16 N 1.46502 * 113.61437 * 139.98300 * 14 13 11 17 17 C 1.34774 * 120.00060 * 107.50176 * 16 14 13 18 18 O 1.21279 * 120.00060 * 0.02562 * 17 16 14 19 19 C 1.50698 * 119.99997 * 180.02562 * 17 16 14 20 20 S 1.81008 * 109.47140 * 180.02562 * 19 17 16 21 21 C 1.76195 * 100.00081 * 179.97438 * 20 19 17 22 22 H 1.08006 * 119.99861 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00147 * 179.97438 * 21 20 19 24 24 N 1.31631 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00074 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47335 * 60.00053 * 25 23 21 27 27 H 1.48500 * 109.47066 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47081 * 300.00060 * 25 23 21 29 29 C 1.53777 * 87.08081 * 25.43659 * 14 13 11 30 30 H 1.07996 * 119.99915 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00042 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.00044 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.47312 * 305.51604 * 5 3 2 34 34 H 1.08996 * 109.47043 * 65.51468 * 5 3 2 35 35 H 1.09004 * 109.46952 * 174.54989 * 6 5 3 36 36 H 1.08993 * 109.47143 * 294.55170 * 6 5 3 37 37 H 1.08994 * 109.47048 * 54.55887 * 6 5 3 38 38 H 1.09000 * 109.47230 * 306.46699 * 7 3 2 39 39 H 1.09007 * 109.47239 * 186.46453 * 7 3 2 40 40 H 0.96999 * 120.00381 * 359.73133 * 10 8 7 41 41 H 1.08993 * 113.61875 * 203.66586 * 13 11 10 42 42 H 1.09000 * 113.61115 * 334.57232 * 13 11 10 43 43 H 0.96996 * 119.99994 * 287.50584 * 16 14 13 44 44 H 1.09002 * 109.47028 * 299.99988 * 19 17 16 45 45 H 1.09003 * 109.47444 * 59.99991 * 19 17 16 46 46 H 0.96996 * 120.00545 * 180.02562 * 24 23 21 47 47 H 1.09004 * 113.61354 * 220.01743 * 29 14 13 48 48 H 1.09002 * 113.61773 * 89.11399 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 3.6019 2.7653 1.3204 7 6 2.9431 1.3861 -1.2492 8 6 2.0694 1.4663 -2.4745 9 8 0.8641 1.3858 -2.3661 10 7 2.6277 1.6221 -3.6912 11 6 1.7787 1.6940 -4.8830 12 1 0.8095 1.2156 -4.7417 13 6 1.6890 3.1036 -5.4914 14 6 2.9250 2.7352 -6.3288 15 1 3.8709 2.9660 -5.8387 16 7 2.8655 3.2233 -7.7089 17 6 3.6469 4.2516 -8.0943 18 8 4.3996 4.7726 -7.2987 19 6 3.5853 4.7541 -9.5137 20 16 4.7438 6.1297 -9.7176 21 6 4.4723 6.5091 -11.4167 22 1 3.7554 5.9393 -11.9894 23 6 5.1788 7.5409 -12.0189 24 7 6.0522 8.2357 -11.3209 25 14 4.8915 7.9427 -13.8204 26 1 3.4686 8.3160 -14.0235 27 1 5.7631 9.0767 -14.2198 28 1 5.2148 6.7543 -14.6502 29 6 2.4939 1.2671 -6.1756 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 2.3294 1.2305 2.1365 34 1 3.7141 0.6173 1.2012 35 1 4.1505 2.8579 2.2577 36 1 4.2901 2.8828 0.4834 37 1 2.8344 3.5376 1.2709 38 1 3.5720 0.4978 -1.3090 39 1 3.5728 2.2741 -1.1933 40 1 3.5917 1.6866 -3.7779 41 1 0.7907 3.2659 -6.0868 42 1 1.8712 3.9020 -4.7720 43 1 2.2638 2.8064 -8.3452 44 1 3.8549 3.9482 -10.1964 45 1 2.5737 5.0946 -9.7351 46 1 6.5457 8.9570 -11.7416 47 1 3.3258 0.5829 -6.0087 48 1 1.8155 0.9272 -6.9582 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737441919.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:02 Heat of formation + Delta-G solvation = -51.863530 kcal Electronic energy + Delta-G solvation = -26092.244924 eV Core-core repulsion = 22273.953471 eV Total energy + Delta-G solvation = -3818.291454 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.71638 -39.52855 -38.17026 -36.80721 -34.16148 -32.68019 -32.44643 -32.40090 -30.02081 -29.06487 -26.00776 -25.84711 -25.50192 -24.11773 -21.74192 -21.01518 -20.46914 -19.86233 -19.79449 -17.83185 -17.59298 -16.64965 -16.34720 -16.06459 -15.71547 -15.35077 -14.94980 -14.81767 -14.79478 -14.18449 -14.12410 -14.07184 -13.76375 -13.36118 -13.18699 -13.04584 -12.79401 -12.71690 -12.60369 -12.26152 -12.09845 -11.95398 -11.93391 -11.42899 -11.06967 -11.06451 -11.05166 -11.02648 -10.85751 -10.80821 -10.72332 -10.13920 -9.83624 -9.47620 -9.39196 -9.25738 -9.07597 -8.87367 -8.26165 -6.51826 -6.22939 -3.93805 2.17626 2.41839 2.83954 3.02131 3.02914 3.22509 3.26719 3.30480 3.70774 4.16075 4.19273 4.30010 4.38672 4.41956 4.43353 4.69912 4.79615 4.82721 4.93587 5.03014 5.05707 5.09943 5.12186 5.13349 5.25808 5.33355 5.40750 5.46422 5.50565 5.55050 5.59554 5.65942 5.68414 5.75190 5.81408 5.83639 5.86843 5.91047 5.97884 6.11718 6.29576 6.47774 6.62394 6.67664 7.22237 7.57817 7.67761 7.99446 8.33558 8.57414 9.22262 10.84423 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026126 B = 0.001635 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.478647 B =17119.172615 C =17880.884539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.157 4.157 3 C -0.043 4.043 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.157 4.157 7 C -0.137 4.137 8 C 0.514 3.486 9 O -0.530 6.530 10 N -0.717 5.717 11 C 0.124 3.876 12 H 0.107 0.893 13 C -0.164 4.164 14 C 0.127 3.873 15 H 0.113 0.887 16 N -0.728 5.728 17 C 0.533 3.467 18 O -0.518 6.518 19 C -0.155 4.155 20 S -0.060 6.060 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 C -0.153 4.153 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.402 0.598 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.399 0.601 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.079 0.921 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.316 -18.837 21.279 29.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C -0.062 4.062 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.215 4.215 7 C -0.177 4.177 8 C 0.301 3.699 9 O -0.406 6.406 10 N -0.368 5.368 11 C 0.018 3.982 12 H 0.125 0.875 13 C -0.204 4.204 14 C 0.021 3.979 15 H 0.131 0.869 16 N -0.382 5.382 17 C 0.319 3.681 18 O -0.392 6.392 19 C -0.305 4.305 20 S 0.166 5.834 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 C -0.192 4.192 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.236 0.764 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.233 0.767 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.784 -17.863 22.691 29.909 hybrid contribution -0.840 -0.504 -2.624 2.801 sum -8.625 -18.367 20.066 28.538 Atomic orbital electron populations 1.23712 0.95949 1.01363 0.98897 1.22656 0.95995 0.97141 1.01664 1.20148 0.96420 0.96941 0.92710 0.90067 1.21545 0.98791 0.97732 0.97313 1.21862 1.00806 0.96975 1.01814 1.21793 0.98795 1.04629 0.92511 1.20732 0.89270 0.75439 0.84437 1.90715 1.14911 1.48723 1.86232 1.45768 1.10292 1.74865 1.05924 1.21633 0.95459 0.97261 0.83858 0.87534 1.23956 0.99448 0.97496 0.99524 1.22477 0.99331 0.92948 0.83161 0.86915 1.45981 1.44377 1.36038 1.11760 1.20359 0.79021 0.78851 0.89833 1.90690 1.38049 1.56289 1.54198 1.23547 1.06649 1.05421 0.94922 1.85383 1.49288 1.34575 1.14108 1.22829 1.28414 1.21455 0.95801 0.90973 1.24988 0.94472 0.95053 0.99029 1.70003 1.23632 1.20107 1.36550 0.86224 0.78357 0.78064 0.82850 1.19936 1.20796 1.19941 1.23748 1.01177 0.96944 0.97353 0.89195 0.88609 0.88078 0.91570 0.91778 0.92606 0.92432 0.92540 0.88711 0.88437 0.76384 0.88821 0.90605 0.76662 0.89206 0.89205 0.92116 0.90220 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 13.21 29.02 0.38 -1.02 16 2 C -0.16 -1.23 7.79 -36.02 -0.28 -1.51 16 3 C -0.04 -0.31 1.80 -91.78 -0.17 -0.47 16 4 H 0.08 0.71 7.61 -51.93 -0.40 0.31 16 5 C -0.12 -0.64 5.38 -26.73 -0.14 -0.79 16 6 C -0.16 -0.84 9.55 37.16 0.35 -0.49 16 7 C -0.14 -0.86 5.05 -27.89 -0.14 -1.00 16 8 C 0.51 4.67 7.62 -10.99 -0.08 4.59 16 9 O -0.53 -6.60 13.74 5.55 0.08 -6.52 16 10 N -0.72 -5.55 5.26 -53.01 -0.28 -5.83 16 11 C 0.12 1.05 4.32 -67.12 -0.29 0.76 16 12 H 0.11 1.01 7.46 -51.93 -0.39 0.62 16 13 C -0.16 -1.64 7.68 -25.92 -0.20 -1.84 16 14 C 0.13 1.34 4.12 -67.12 -0.28 1.06 16 15 H 0.11 1.37 7.46 -51.93 -0.39 0.98 16 16 N -0.73 -9.08 5.35 -53.02 -0.28 -9.37 16 17 C 0.53 9.61 7.85 -10.99 -0.09 9.52 16 18 O -0.52 -11.41 15.46 5.56 0.09 -11.32 16 19 C -0.15 -3.06 6.16 36.00 0.22 -2.83 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 22 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.04 13.22 55.49 0.73 -25.30 16 25 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 29 C -0.15 -1.13 7.58 -25.92 -0.20 -1.32 16 30 H 0.09 0.69 8.06 -52.49 -0.42 0.26 16 31 H 0.10 0.90 7.83 -52.49 -0.41 0.49 16 32 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.29 6.71 -51.93 -0.35 -0.06 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.50 6.42 -51.93 -0.33 0.16 16 40 H 0.40 2.35 8.70 -40.82 -0.36 1.99 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.40 3.80 8.73 -40.82 -0.36 3.44 16 44 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 45 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.10 0.61 8.12 -51.93 -0.42 0.19 16 LS Contribution 410.27 15.07 6.18 6.18 Total: -1.00 -35.73 410.27 -9.44 -45.16 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -8.01 Total: 2.82 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -0.70 Total: -8.25 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.17 Total: -40.50 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.16 Total: -17.84 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.73 -9.44 -45.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737441919.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.700 kcal (2) G-P(sol) polarization free energy of solvation -35.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds