Wall clock time and date at job start Sat Apr 11 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00164 * 2 1 4 4 H 1.09005 * 109.46814 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47551 * 119.99870 * 3 2 1 6 6 C 1.53003 * 109.47170 * 185.51760 * 5 3 2 7 7 C 1.52995 * 109.46986 * 239.99974 * 3 2 1 8 8 C 1.50697 * 109.47440 * 66.46779 * 7 3 2 9 9 O 1.21286 * 119.99803 * 355.96798 * 8 7 3 10 10 N 1.34777 * 120.00177 * 176.23452 * 8 7 3 11 11 C 1.46501 * 119.99904 * 179.72377 * 10 8 7 12 12 H 1.09002 * 112.85178 * 336.20491 * 11 10 8 13 13 C 1.53786 * 113.61602 * 107.50552 * 11 10 8 14 14 C 1.53779 * 87.07892 * 89.11433 * 13 11 10 15 15 H 1.09001 * 113.69602 * 270.87624 * 14 13 11 16 16 N 1.46502 * 113.61437 * 139.98300 * 14 13 11 17 17 C 1.34774 * 120.00060 * 107.50176 * 16 14 13 18 18 O 1.21279 * 120.00060 * 0.02562 * 17 16 14 19 19 C 1.50698 * 119.99997 * 180.02562 * 17 16 14 20 20 S 1.81008 * 109.47140 * 180.02562 * 19 17 16 21 21 C 1.76195 * 100.00081 * 179.97438 * 20 19 17 22 22 H 1.08006 * 119.99861 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00147 * 179.97438 * 21 20 19 24 24 N 1.31631 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00074 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47335 * 60.00053 * 25 23 21 27 27 H 1.48500 * 109.47066 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47081 * 300.00060 * 25 23 21 29 29 C 1.53777 * 87.08081 * 25.43659 * 14 13 11 30 30 H 1.07996 * 119.99915 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00042 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.00044 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.47312 * 305.51604 * 5 3 2 34 34 H 1.08996 * 109.47043 * 65.51468 * 5 3 2 35 35 H 1.09004 * 109.46952 * 174.54989 * 6 5 3 36 36 H 1.08993 * 109.47143 * 294.55170 * 6 5 3 37 37 H 1.08994 * 109.47048 * 54.55887 * 6 5 3 38 38 H 1.09000 * 109.47230 * 306.46699 * 7 3 2 39 39 H 1.09007 * 109.47239 * 186.46453 * 7 3 2 40 40 H 0.96999 * 120.00381 * 359.73133 * 10 8 7 41 41 H 1.08993 * 113.61875 * 203.66586 * 13 11 10 42 42 H 1.09000 * 113.61115 * 334.57232 * 13 11 10 43 43 H 0.96996 * 119.99994 * 287.50584 * 16 14 13 44 44 H 1.09002 * 109.47028 * 299.99988 * 19 17 16 45 45 H 1.09003 * 109.47444 * 59.99991 * 19 17 16 46 46 H 0.96996 * 120.00545 * 180.02562 * 24 23 21 47 47 H 1.09004 * 113.61354 * 220.01743 * 29 14 13 48 48 H 1.09002 * 113.61773 * 89.11399 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 3.6019 2.7653 1.3204 7 6 2.9431 1.3861 -1.2492 8 6 2.0694 1.4663 -2.4745 9 8 0.8641 1.3858 -2.3661 10 7 2.6277 1.6221 -3.6912 11 6 1.7787 1.6940 -4.8830 12 1 0.8095 1.2156 -4.7417 13 6 1.6890 3.1036 -5.4914 14 6 2.9250 2.7352 -6.3288 15 1 3.8709 2.9660 -5.8387 16 7 2.8655 3.2233 -7.7089 17 6 3.6469 4.2516 -8.0943 18 8 4.3996 4.7726 -7.2987 19 6 3.5853 4.7541 -9.5137 20 16 4.7438 6.1297 -9.7176 21 6 4.4723 6.5091 -11.4167 22 1 3.7554 5.9393 -11.9894 23 6 5.1788 7.5409 -12.0189 24 7 6.0522 8.2357 -11.3209 25 14 4.8915 7.9427 -13.8204 26 1 3.4686 8.3160 -14.0235 27 1 5.7631 9.0767 -14.2198 28 1 5.2148 6.7543 -14.6502 29 6 2.4939 1.2671 -6.1756 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 2.3294 1.2305 2.1365 34 1 3.7141 0.6173 1.2012 35 1 4.1505 2.8579 2.2577 36 1 4.2901 2.8828 0.4834 37 1 2.8344 3.5376 1.2709 38 1 3.5720 0.4978 -1.3090 39 1 3.5728 2.2741 -1.1933 40 1 3.5917 1.6866 -3.7779 41 1 0.7907 3.2659 -6.0868 42 1 1.8712 3.9020 -4.7720 43 1 2.2638 2.8064 -8.3452 44 1 3.8549 3.9482 -10.1964 45 1 2.5737 5.0946 -9.7351 46 1 6.5457 8.9570 -11.7416 47 1 3.3258 0.5829 -6.0087 48 1 1.8155 0.9272 -6.9582 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737441919.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:01 Heat of formation + Delta-G solvation = -76.292878 kcal Electronic energy + Delta-G solvation = -26093.304260 eV Core-core repulsion = 22273.953471 eV Total energy + Delta-G solvation = -3819.350790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.53965 -40.55776 -39.21553 -37.45031 -35.17042 -34.58091 -33.60508 -33.03393 -30.88614 -30.25092 -27.68044 -26.73990 -26.42502 -24.97130 -22.33716 -21.88667 -21.54998 -20.65671 -20.44290 -19.75975 -18.33412 -17.80725 -17.49771 -16.91744 -16.87360 -16.46186 -16.36740 -15.96777 -15.90798 -15.38307 -14.99194 -14.77582 -14.59531 -14.54636 -14.39693 -13.98782 -13.83369 -13.56345 -13.34900 -13.17639 -13.15982 -13.10835 -12.86433 -12.72573 -12.60933 -12.45921 -11.93694 -11.87731 -11.78767 -11.56862 -11.55637 -11.34194 -11.12658 -10.93002 -10.84790 -10.27620 -10.15796 -10.01308 -9.88810 -8.66176 -8.34284 -6.12338 1.27789 1.44059 1.47541 1.54035 1.57360 1.60469 1.72819 2.20976 2.27125 2.33949 2.99774 3.32476 3.41997 3.57121 3.79809 3.84964 3.90990 3.91811 3.97911 4.06304 4.32067 4.33274 4.42486 4.48986 4.51842 4.55860 4.60395 4.65201 4.72733 4.77162 4.82959 4.90347 4.98751 5.00611 5.02951 5.07045 5.16303 5.22634 5.36381 5.41813 5.47518 5.51409 5.66709 5.83597 6.06464 6.19782 6.53402 6.60086 7.06977 7.26826 7.33067 8.74594 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026126 B = 0.001635 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.478647 B =17119.172615 C =17880.884539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C -0.043 4.043 4 H 0.057 0.943 5 C -0.110 4.110 6 C -0.158 4.158 7 C -0.132 4.132 8 C 0.509 3.491 9 O -0.568 6.568 10 N -0.711 5.711 11 C 0.129 3.871 12 H 0.101 0.899 13 C -0.164 4.164 14 C 0.116 3.884 15 H 0.097 0.903 16 N -0.702 5.702 17 C 0.535 3.465 18 O -0.566 6.566 19 C -0.131 4.131 20 S -0.152 6.152 21 C -0.548 4.548 22 H 0.083 0.917 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.263 1.263 27 H -0.279 1.279 28 H -0.262 1.262 29 C -0.128 4.128 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.412 0.588 41 H 0.100 0.900 42 H 0.054 0.946 43 H 0.418 0.582 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.271 0.729 47 H 0.095 0.905 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.691 -21.034 20.269 30.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.169 4.169 3 C -0.062 4.062 4 H 0.076 0.924 5 C -0.147 4.147 6 C -0.215 4.215 7 C -0.172 4.172 8 C 0.297 3.703 9 O -0.447 6.447 10 N -0.363 5.363 11 C 0.022 3.978 12 H 0.119 0.881 13 C -0.205 4.205 14 C 0.011 3.989 15 H 0.115 0.885 16 N -0.355 5.355 17 C 0.321 3.679 18 O -0.444 6.444 19 C -0.283 4.283 20 S 0.075 5.925 21 C -0.696 4.696 22 H 0.101 0.899 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.187 1.187 27 H -0.204 1.204 28 H -0.186 1.186 29 C -0.167 4.167 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.249 0.751 41 H 0.119 0.881 42 H 0.073 0.927 43 H 0.255 0.745 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.080 0.920 47 H 0.114 0.886 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.180 -20.110 21.679 30.681 hybrid contribution -0.793 0.115 -2.219 2.359 sum -8.973 -19.994 19.461 29.309 Atomic orbital electron populations 1.23727 0.96556 1.01008 1.00565 1.22877 0.95828 0.98055 1.00145 1.20130 0.96373 0.95736 0.94002 0.92442 1.21495 0.98749 0.98267 0.96229 1.21872 1.00654 0.96561 1.02449 1.21827 0.98393 1.06422 0.90537 1.21257 0.89091 0.74559 0.85365 1.90707 1.16630 1.50559 1.86780 1.45756 1.10861 1.74098 1.05540 1.21541 0.95680 0.95983 0.84607 0.88109 1.23968 0.99339 0.97913 0.99232 1.22676 0.98962 0.95582 0.81665 0.88510 1.45741 1.42775 1.33941 1.13024 1.20087 0.79380 0.79781 0.88700 1.90680 1.40451 1.58254 1.55033 1.23398 1.05089 1.02854 0.96931 1.85555 1.52920 1.39034 1.14951 1.23183 1.28644 1.21832 0.95928 0.89908 1.26118 0.93928 0.94722 1.04339 1.70172 1.24870 1.20828 1.38866 0.85014 0.78667 0.78132 0.76245 1.18742 1.20425 1.18608 1.23667 1.01642 0.94533 0.96834 0.88457 0.90239 0.86543 0.91905 0.90281 0.91975 0.91798 0.93572 0.86259 0.87047 0.75113 0.88124 0.92747 0.74473 0.87086 0.87376 0.92001 0.88648 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 13.21 67.79 0.90 -2.32 16 2 C -0.15 -2.26 7.79 25.65 0.20 -2.06 16 3 C -0.04 -0.58 1.80 -11.54 -0.02 -0.60 16 4 H 0.06 1.05 7.61 -2.38 -0.02 1.03 16 5 C -0.11 -1.07 5.38 30.59 0.16 -0.90 16 6 C -0.16 -1.52 9.55 71.98 0.69 -0.83 16 7 C -0.13 -1.44 5.05 29.85 0.15 -1.29 16 8 C 0.51 8.76 7.62 87.66 0.67 9.43 16 9 O -0.57 -14.16 13.74 -3.05 -0.04 -14.20 16 10 N -0.71 -9.94 5.26 -440.03 -2.32 -12.25 16 11 C 0.13 1.94 4.32 45.52 0.20 2.14 16 12 H 0.10 1.75 7.46 -2.39 -0.02 1.73 16 13 C -0.16 -3.11 7.68 31.12 0.24 -2.87 16 14 C 0.12 2.25 4.12 45.52 0.19 2.44 16 15 H 0.10 2.27 7.46 -2.39 -0.02 2.25 16 16 N -0.70 -15.97 5.35 -440.05 -2.36 -18.33 16 17 C 0.53 18.83 7.85 87.66 0.69 19.52 16 18 O -0.57 -25.33 15.46 -3.03 -0.05 -25.37 16 19 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 20 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 21 C -0.55 -31.06 9.50 67.95 0.65 -30.41 16 22 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 23 C 0.01 0.78 5.49 84.86 0.47 1.24 16 24 N -0.91 -55.71 13.22 21.65 0.29 -55.42 16 25 Si 1.00 43.23 29.55 68.60 2.03 45.26 16 26 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 29 C -0.13 -1.47 7.58 31.12 0.24 -1.23 16 30 H 0.10 1.50 8.06 -2.91 -0.02 1.48 16 31 H 0.08 1.63 7.83 -2.91 -0.02 1.61 16 32 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.06 0.53 6.71 -2.39 -0.02 0.51 16 37 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.11 0.93 6.42 -2.38 -0.02 0.91 16 40 H 0.41 4.03 8.70 -92.71 -0.81 3.22 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.42 6.51 8.73 -92.71 -0.81 5.70 16 44 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 45 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 46 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 47 H 0.09 0.89 8.14 -2.38 -0.02 0.88 16 48 H 0.12 0.95 8.12 -2.39 -0.02 0.93 16 Total: -1.00 -81.01 410.27 1.58 -79.44 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.66 Total: 22.76 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 5.84 Total: -12.38 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -4.39 Total: -86.01 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.09 Total: -39.58 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -81.01 1.58 -79.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737441919.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.145 kcal (2) G-P(sol) polarization free energy of solvation -81.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds