Wall clock time and date at job start Sat Apr 11 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99661 * 269.99401 * 4 3 2 6 6 C 1.52997 * 109.47136 * 90.00560 * 5 4 3 7 7 N 1.46498 * 109.47506 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00264 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00297 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00057 * 179.97438 * 8 7 6 11 11 S 1.81001 * 109.47187 * 179.97438 * 10 8 7 12 12 C 1.76198 * 99.99925 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00216 * 359.97438 * 12 11 10 14 14 C 1.38796 * 120.00018 * 179.97438 * 12 11 10 15 15 N 1.31631 * 119.99977 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00253 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46874 * 60.00146 * 16 14 12 18 18 H 1.48496 * 109.47249 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47141 * 300.00078 * 16 14 12 20 20 C 1.34774 * 120.00336 * 90.00128 * 4 3 2 21 21 O 1.21274 * 120.00360 * 179.97438 * 20 4 3 22 22 C 1.50699 * 119.99645 * 359.97438 * 20 4 3 23 23 H 1.08998 * 115.55538 * 34.41709 * 22 20 4 24 24 C 1.53010 * 117.49779 * 248.74903 * 22 20 4 25 25 C 1.52996 * 117.49835 * 180.09373 * 22 20 4 26 26 C 1.52996 * 138.58508 * 336.58815 * 25 22 20 27 27 C 1.52993 * 138.58518 * 238.38302 * 25 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09000 * 109.47241 * 210.00440 * 5 4 3 36 36 H 1.09003 * 109.47625 * 330.00280 * 5 4 3 37 37 H 1.09000 * 109.46958 * 300.00053 * 6 5 4 38 38 H 1.09000 * 109.47408 * 59.99810 * 6 5 4 39 39 H 0.97000 * 119.99898 * 359.97438 * 7 6 5 40 40 H 1.09000 * 109.47153 * 299.99636 * 10 8 7 41 41 H 1.09003 * 109.47550 * 59.99376 * 10 8 7 42 42 H 0.97001 * 120.00216 * 179.97438 * 15 14 12 43 43 H 1.09000 * 117.49736 * 359.97438 * 24 22 20 44 44 H 1.08998 * 117.49919 * 145.02468 * 24 22 20 45 45 H 1.08999 * 117.49934 * 336.60180 * 26 25 22 46 46 H 1.08998 * 117.49962 * 121.62348 * 26 25 22 47 47 H 1.09004 * 117.50317 * 238.37437 * 27 25 22 48 48 H 1.08998 * 117.50316 * 23.37827 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.4932 -0.0001 1.7093 7 7 5.2256 -0.0003 2.9780 8 6 5.5632 -1.1675 3.5612 9 8 5.2602 -2.2178 3.0358 10 6 6.3171 -1.1676 4.8660 11 16 6.6189 -2.8742 5.3883 12 6 7.4890 -2.5844 6.8928 13 1 7.6792 -1.5730 7.2204 14 6 7.9301 -3.6558 7.6568 15 7 7.6980 -4.8885 7.2578 16 14 8.8533 -3.3487 9.2514 17 1 7.9913 -2.5757 10.1813 18 1 9.2127 -4.6482 9.8736 19 1 10.0901 -2.5778 8.9668 20 6 4.1785 1.4427 -1.1680 21 8 5.3912 1.4431 -1.1686 22 6 3.4244 1.4423 -2.4728 23 1 2.4866 1.9978 -2.4740 24 6 3.4973 0.1774 -3.3306 25 6 4.2460 1.4403 -3.7635 26 6 5.6460 1.8406 -4.2331 27 6 4.4154 2.3009 -5.0170 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 5.1903 1.9563 1.1372 36 1 3.6492 1.9562 2.0278 37 1 3.5408 -0.5140 1.8399 38 1 5.0820 -0.5139 0.9494 39 1 5.4683 0.8397 3.3981 40 1 7.2693 -0.6535 4.7355 41 1 5.7282 -0.6542 5.6260 42 1 8.0065 -5.6374 7.7915 43 1 4.0910 -0.6544 -2.9513 44 1 2.6076 -0.0990 -3.8963 45 1 6.1785 2.5895 -3.6469 46 1 6.2673 1.0652 -4.6813 47 1 4.2271 1.8285 -5.9812 48 1 4.1380 3.3527 -4.9468 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737854450.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:14 Heat of formation + Delta-G solvation = -17.857680 kcal Electronic energy + Delta-G solvation = -26637.768618 eV Core-core repulsion = 22820.951769 eV Total energy + Delta-G solvation = -3816.816849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.65670 -39.12757 -38.07262 -36.65602 -34.83113 -33.12557 -32.96211 -32.41248 -30.39377 -28.33998 -26.54196 -25.49771 -24.68360 -22.72127 -22.67303 -21.99566 -20.57847 -20.03225 -18.80496 -17.85508 -17.76021 -16.65667 -16.23530 -15.91897 -15.56554 -15.35617 -15.18252 -14.98096 -14.79932 -14.75395 -14.45379 -13.87960 -13.85179 -13.72290 -13.16148 -12.90789 -12.62882 -12.56452 -12.46321 -12.28663 -12.05628 -11.95565 -11.79740 -11.59336 -11.43526 -11.03503 -11.03040 -11.01040 -10.76035 -10.54750 -10.47513 -10.33741 -9.98516 -9.81417 -9.43465 -9.05942 -9.04854 -8.87529 -8.22245 -6.48309 -6.19878 -3.90495 2.16474 2.39828 3.10137 3.12186 3.24752 3.28834 3.31662 3.34668 3.40304 3.79352 3.89511 4.14207 4.22059 4.38470 4.43931 4.56054 4.62277 4.75395 4.79778 4.88573 4.99178 5.05377 5.14394 5.15038 5.18021 5.21073 5.23529 5.27294 5.31182 5.32306 5.39707 5.56802 5.60456 5.62751 5.67119 5.70041 5.72966 5.84884 5.89682 5.91618 5.99247 6.15240 6.17353 6.61146 7.00262 7.60783 7.70206 7.88692 8.36634 8.62717 9.25132 10.87483 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.001940 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.015997 B =14429.759252 C =15164.235712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.109 3.891 4 N -0.608 5.608 5 C 0.106 3.894 6 C 0.107 3.893 7 N -0.737 5.737 8 C 0.533 3.467 9 O -0.517 6.517 10 C -0.153 4.153 11 S -0.060 6.060 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.543 3.457 21 O -0.525 6.525 22 C -0.141 4.141 23 H 0.125 0.875 24 C -0.098 4.098 25 C -0.203 4.203 26 C -0.113 4.113 27 C -0.129 4.129 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.398 0.602 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.269 0.731 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.731 18.412 -21.562 31.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 C -0.014 4.014 4 N -0.341 5.341 5 C -0.017 4.017 6 C -0.018 4.018 7 N -0.392 5.392 8 C 0.319 3.681 9 O -0.391 6.391 10 C -0.303 4.303 11 S 0.167 5.833 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.199 1.199 20 C 0.331 3.669 21 O -0.400 6.400 22 C -0.162 4.162 23 H 0.142 0.858 24 C -0.135 4.135 25 C -0.204 4.204 26 C -0.150 4.150 27 C -0.166 4.166 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.558 16.463 -22.407 31.385 hybrid contribution 0.861 1.783 1.993 2.809 sum -13.697 18.246 -20.414 30.615 Atomic orbital electron populations 1.21693 0.94896 1.02346 1.01775 1.22079 0.96387 0.96759 1.03537 1.21783 0.78674 0.97563 1.03381 1.47784 1.06907 1.73986 1.05386 1.21603 0.98539 0.96632 0.84961 1.21652 0.97170 0.96669 0.86334 1.45852 1.60240 1.09016 1.24135 1.20304 0.78713 0.83106 0.85993 1.90704 1.53037 1.30997 1.64323 1.23528 1.02086 1.08508 0.96224 1.85403 1.73464 0.97262 1.27219 1.22829 1.42049 0.95472 1.08057 0.90963 1.24995 0.95819 0.94434 0.98365 1.70010 1.43943 0.98050 1.38296 0.86218 0.79811 0.77659 0.81775 1.19951 1.20818 1.19938 1.19746 0.87402 0.75573 0.84219 1.90730 1.13689 1.48498 1.87055 1.21989 1.00602 1.04862 0.88734 0.85782 1.22690 1.01405 0.90147 0.99284 1.21196 1.01675 1.01751 0.95763 1.22609 0.89111 1.02503 1.00749 1.22765 1.01665 0.98792 0.93386 0.92175 0.92666 0.92515 0.90934 0.91311 0.90068 0.90048 0.89127 0.89775 0.91398 0.91380 0.76831 0.89155 0.89183 0.92139 0.87895 0.87481 0.88192 0.88413 0.88291 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.42 16 2 C -0.15 -0.99 6.26 -26.73 -0.17 -1.16 16 3 C 0.11 0.63 5.28 -4.04 -0.02 0.61 16 4 N -0.61 -5.32 2.47 -173.69 -0.43 -5.75 16 5 C 0.11 0.99 5.56 -4.04 -0.02 0.96 16 6 C 0.11 1.36 6.00 -4.04 -0.02 1.33 16 7 N -0.74 -10.22 5.56 -60.30 -0.33 -10.56 16 8 C 0.53 10.28 7.85 -10.99 -0.09 10.19 16 9 O -0.52 -12.15 15.86 5.56 0.09 -12.06 16 10 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 11 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 12 C -0.54 -15.43 9.50 30.94 0.29 -15.13 16 13 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 14 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 15 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 16 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.54 5.88 7.46 -10.99 -0.08 5.80 16 21 O -0.52 -7.77 15.82 5.56 0.09 -7.68 16 22 C -0.14 -1.14 5.28 -91.77 -0.48 -1.62 16 23 H 0.12 0.70 6.44 -51.93 -0.33 0.37 16 24 C -0.10 -0.74 10.24 -26.69 -0.27 -1.02 16 25 C -0.20 -1.74 5.06 -154.48 -0.78 -2.52 16 26 C -0.11 -0.98 10.16 -26.73 -0.27 -1.25 16 27 C -0.13 -0.85 10.53 -26.73 -0.28 -1.13 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.62 6.26 -51.93 -0.33 0.30 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.34 5.99 -51.93 -0.31 0.03 16 34 H 0.08 0.38 7.89 -51.93 -0.41 -0.03 16 35 H 0.09 0.94 7.42 -51.93 -0.39 0.56 16 36 H 0.08 0.57 7.89 -51.93 -0.41 0.16 16 37 H 0.07 0.88 6.26 -51.93 -0.33 0.55 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.40 4.18 8.47 -40.82 -0.35 3.84 16 40 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 41 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 42 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 413.72 15.07 6.23 6.23 Total: -1.00 -37.24 413.72 -10.45 -47.70 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.89 Total: 1.37 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -1.71 Total: -6.26 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: -0.03 Total: -41.99 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.18 Total: -19.74 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -37.24 -10.45 -47.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737854450.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.838 kcal (2) G-P(sol) polarization free energy of solvation -37.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds