Wall clock time and date at job start Sat Apr 11 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99661 * 269.99401 * 4 3 2 6 6 C 1.52997 * 109.47136 * 90.00560 * 5 4 3 7 7 N 1.46498 * 109.47506 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00264 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00297 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00057 * 179.97438 * 8 7 6 11 11 S 1.81001 * 109.47187 * 179.97438 * 10 8 7 12 12 C 1.76198 * 99.99925 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00216 * 359.97438 * 12 11 10 14 14 C 1.38796 * 120.00018 * 179.97438 * 12 11 10 15 15 N 1.31631 * 119.99977 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00253 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46874 * 60.00146 * 16 14 12 18 18 H 1.48496 * 109.47249 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47141 * 300.00078 * 16 14 12 20 20 C 1.34774 * 120.00336 * 90.00128 * 4 3 2 21 21 O 1.21274 * 120.00360 * 179.97438 * 20 4 3 22 22 C 1.50699 * 119.99645 * 359.97438 * 20 4 3 23 23 H 1.08998 * 115.55538 * 34.41709 * 22 20 4 24 24 C 1.53010 * 117.49779 * 248.74903 * 22 20 4 25 25 C 1.52996 * 117.49835 * 180.09373 * 22 20 4 26 26 C 1.52996 * 138.58508 * 336.58815 * 25 22 20 27 27 C 1.52993 * 138.58518 * 238.38302 * 25 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09000 * 109.47241 * 210.00440 * 5 4 3 36 36 H 1.09003 * 109.47625 * 330.00280 * 5 4 3 37 37 H 1.09000 * 109.46958 * 300.00053 * 6 5 4 38 38 H 1.09000 * 109.47408 * 59.99810 * 6 5 4 39 39 H 0.97000 * 119.99898 * 359.97438 * 7 6 5 40 40 H 1.09000 * 109.47153 * 299.99636 * 10 8 7 41 41 H 1.09003 * 109.47550 * 59.99376 * 10 8 7 42 42 H 0.97001 * 120.00216 * 179.97438 * 15 14 12 43 43 H 1.09000 * 117.49736 * 359.97438 * 24 22 20 44 44 H 1.08998 * 117.49919 * 145.02468 * 24 22 20 45 45 H 1.08999 * 117.49934 * 336.60180 * 26 25 22 46 46 H 1.08998 * 117.49962 * 121.62348 * 26 25 22 47 47 H 1.09004 * 117.50317 * 238.37437 * 27 25 22 48 48 H 1.08998 * 117.50316 * 23.37827 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.4932 -0.0001 1.7093 7 7 5.2256 -0.0003 2.9780 8 6 5.5632 -1.1675 3.5612 9 8 5.2602 -2.2178 3.0358 10 6 6.3171 -1.1676 4.8660 11 16 6.6189 -2.8742 5.3883 12 6 7.4890 -2.5844 6.8928 13 1 7.6792 -1.5730 7.2204 14 6 7.9301 -3.6558 7.6568 15 7 7.6980 -4.8885 7.2578 16 14 8.8533 -3.3487 9.2514 17 1 7.9913 -2.5757 10.1813 18 1 9.2127 -4.6482 9.8736 19 1 10.0901 -2.5778 8.9668 20 6 4.1785 1.4427 -1.1680 21 8 5.3912 1.4431 -1.1686 22 6 3.4244 1.4423 -2.4728 23 1 2.4866 1.9978 -2.4740 24 6 3.4973 0.1774 -3.3306 25 6 4.2460 1.4403 -3.7635 26 6 5.6460 1.8406 -4.2331 27 6 4.4154 2.3009 -5.0170 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 5.1903 1.9563 1.1372 36 1 3.6492 1.9562 2.0278 37 1 3.5408 -0.5140 1.8399 38 1 5.0820 -0.5139 0.9494 39 1 5.4683 0.8397 3.3981 40 1 7.2693 -0.6535 4.7355 41 1 5.7282 -0.6542 5.6260 42 1 8.0065 -5.6374 7.7915 43 1 4.0910 -0.6544 -2.9513 44 1 2.6076 -0.0990 -3.8963 45 1 6.1785 2.5895 -3.6469 46 1 6.2673 1.0652 -4.6813 47 1 4.2271 1.8285 -5.9812 48 1 4.1380 3.3527 -4.9468 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737854450.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:13 Heat of formation + Delta-G solvation = -42.254903 kcal Electronic energy + Delta-G solvation = -26638.826561 eV Core-core repulsion = 22820.951769 eV Total energy + Delta-G solvation = -3817.874792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.45179 -40.59707 -38.75493 -37.48157 -36.02326 -34.59379 -33.87932 -33.58352 -31.73997 -29.57195 -27.67722 -27.10036 -25.59472 -23.44687 -23.29999 -22.60653 -21.94014 -20.80625 -19.87041 -19.48497 -18.50893 -17.93724 -17.45213 -16.99116 -16.88666 -16.77921 -16.21883 -15.90885 -15.87342 -15.57966 -15.41791 -15.33079 -14.89153 -14.75031 -14.42257 -14.33223 -13.63664 -13.54648 -13.35636 -13.18265 -13.01904 -12.91883 -12.86502 -12.66158 -12.62940 -12.38400 -12.31355 -12.11604 -11.76524 -11.60974 -11.17407 -11.13689 -11.11862 -11.07057 -10.94226 -10.73202 -10.30031 -10.21557 -9.84763 -8.68794 -8.35254 -6.14116 1.21753 1.36501 1.43667 1.44975 1.53880 1.55275 1.73757 2.26454 2.36919 2.70963 2.79206 2.98662 3.29578 3.31216 3.51182 3.75692 3.80801 3.86878 3.95565 4.01227 4.07278 4.17329 4.27452 4.30179 4.38213 4.45016 4.48230 4.56395 4.59370 4.68638 4.71885 4.74583 4.77667 4.78609 4.87081 4.95421 4.99577 5.00797 5.18460 5.25463 5.28151 5.30065 5.40759 5.45193 5.54489 6.18861 6.28156 6.42869 7.05567 7.08876 7.18041 8.73783 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.001940 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.015997 B =14429.759252 C =15164.235712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.147 4.147 3 C 0.106 3.894 4 N -0.603 5.603 5 C 0.113 3.887 6 C 0.114 3.886 7 N -0.710 5.710 8 C 0.533 3.467 9 O -0.567 6.567 10 C -0.128 4.128 11 S -0.154 6.154 12 C -0.547 4.547 13 H 0.084 0.916 14 C 0.012 3.988 15 N -0.912 5.912 16 Si 1.000 3.000 17 H -0.260 1.260 18 H -0.279 1.279 19 H -0.263 1.263 20 C 0.533 3.467 21 O -0.575 6.575 22 C -0.137 4.137 23 H 0.157 0.843 24 C -0.093 4.093 25 C -0.228 4.228 26 C -0.139 4.139 27 C -0.100 4.100 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.419 0.581 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.271 0.729 43 H 0.079 0.921 44 H 0.136 0.864 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.116 0.884 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.434 21.527 -21.385 34.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.186 4.186 3 C -0.015 4.015 4 N -0.334 5.334 5 C -0.011 4.011 6 C -0.012 4.012 7 N -0.365 5.365 8 C 0.319 3.681 9 O -0.445 6.445 10 C -0.279 4.279 11 S 0.073 5.927 12 C -0.694 4.694 13 H 0.102 0.898 14 C -0.193 4.193 15 N -0.548 5.548 16 Si 0.822 3.178 17 H -0.185 1.185 18 H -0.204 1.204 19 H -0.187 1.187 20 C 0.323 3.677 21 O -0.454 6.454 22 C -0.158 4.158 23 H 0.174 0.826 24 C -0.130 4.130 25 C -0.228 4.228 26 C -0.175 4.175 27 C -0.137 4.137 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.257 0.743 40 H 0.127 0.873 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.154 0.846 45 H 0.101 0.899 46 H 0.112 0.888 47 H 0.135 0.865 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.304 19.647 -22.233 33.855 hybrid contribution 1.353 0.858 1.854 2.450 sum -14.951 20.505 -20.380 32.548 Atomic orbital electron populations 1.21662 0.93489 1.02138 1.03000 1.22030 0.97543 0.97100 1.01884 1.22049 0.76491 0.97277 1.05721 1.47899 1.08227 1.72713 1.04576 1.21559 0.99236 0.93998 0.86263 1.21680 0.96011 0.98994 0.84494 1.45551 1.58634 1.08324 1.23956 1.20139 0.78504 0.83768 0.85651 1.90693 1.55242 1.33113 1.65476 1.23360 1.03726 1.03381 0.97438 1.85613 1.74097 1.04528 1.28431 1.23173 1.42048 0.96223 1.08000 0.89767 1.26164 0.96641 0.93973 1.02512 1.70184 1.45287 0.99237 1.40090 0.84979 0.78495 0.77838 0.76528 1.18465 1.20398 1.18744 1.20357 0.87063 0.74608 0.85669 1.90707 1.15970 1.50895 1.87854 1.22077 1.01232 1.05471 0.86982 0.82558 1.22728 1.01954 0.89177 0.99160 1.21460 1.01473 1.02857 0.97037 1.22589 0.89930 1.02733 1.02297 1.22845 0.98477 0.99240 0.93088 0.93172 0.90810 0.91878 0.93425 0.92254 0.87553 0.87895 0.90094 0.86004 0.91433 0.94944 0.74347 0.87267 0.86610 0.91986 0.90254 0.84592 0.89941 0.88814 0.86547 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.15 -1.74 6.26 30.60 0.19 -1.55 16 3 C 0.11 0.92 5.28 86.38 0.46 1.38 16 4 N -0.60 -9.66 2.47 -821.82 -2.03 -11.70 16 5 C 0.11 1.93 5.56 86.38 0.48 2.41 16 6 C 0.11 2.87 6.00 86.38 0.52 3.39 16 7 N -0.71 -18.98 5.56 -463.07 -2.57 -21.55 16 8 C 0.53 20.63 7.85 87.66 0.69 21.31 16 9 O -0.57 -27.69 15.86 -3.04 -0.05 -27.74 16 10 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 11 S -0.15 -8.72 20.57 -56.49 -1.16 -9.89 16 12 C -0.55 -31.58 9.50 67.95 0.65 -30.94 16 13 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 14 C 0.01 0.68 5.49 84.86 0.47 1.14 16 15 N -0.91 -56.72 13.22 21.65 0.29 -56.43 16 16 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 17 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 18 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 20 C 0.53 11.38 7.46 87.66 0.65 12.03 16 21 O -0.58 -17.77 15.82 -3.01 -0.05 -17.82 16 22 C -0.14 -2.00 5.28 -11.54 -0.06 -2.06 16 23 H 0.16 1.19 6.44 -2.39 -0.02 1.17 16 24 C -0.09 -1.33 10.24 30.62 0.31 -1.01 16 25 C -0.23 -3.70 5.06 -52.16 -0.26 -3.96 16 26 C -0.14 -2.49 10.16 30.59 0.31 -2.18 16 27 C -0.10 -1.13 10.53 30.59 0.32 -0.81 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.05 0.80 6.26 -2.39 -0.01 0.79 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.11 0.44 5.99 -2.39 -0.01 0.43 16 34 H 0.10 0.53 7.89 -2.39 -0.02 0.51 16 35 H 0.08 1.60 7.42 -2.39 -0.02 1.59 16 36 H 0.12 1.21 7.89 -2.39 -0.02 1.19 16 37 H 0.07 1.76 6.26 -2.39 -0.01 1.74 16 38 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.42 7.78 8.47 -92.71 -0.79 6.99 16 40 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 41 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 42 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 47 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -86.58 413.72 2.50 -84.08 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.17 Total: 21.11 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 5.87 Total: -6.07 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -4.32 Total: -89.68 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -0.10 Total: -45.56 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.89 kcal Total: -86.58 2.50 -84.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737854450.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.828 kcal (2) G-P(sol) polarization free energy of solvation -86.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds