Wall clock time and date at job start Sat Apr 11 2020 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47181 * 2 1 4 4 H 1.09000 * 109.47562 * 304.99711 * 3 2 1 5 5 C 1.53005 * 109.47165 * 185.00043 * 3 2 1 6 6 N 1.46492 * 109.47470 * 184.99907 * 5 3 2 7 7 C 1.34777 * 120.00289 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99588 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00194 * 180.02562 * 7 6 5 10 10 S 1.80994 * 109.47125 * 180.02562 * 9 7 6 11 11 C 1.76197 * 100.00125 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99854 * 359.97438 * 11 10 9 13 13 C 1.38801 * 120.00264 * 179.97438 * 11 10 9 14 14 N 1.31624 * 119.99836 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00109 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46741 * 60.00751 * 15 13 11 17 17 H 1.48497 * 109.47002 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47135 * 300.00780 * 15 13 11 19 19 N 1.46497 * 109.47074 * 65.00347 * 3 2 1 20 20 C 1.34775 * 119.99967 * 274.99677 * 19 3 2 21 21 O 1.21281 * 120.00089 * 359.97438 * 20 19 3 22 22 C 1.50700 * 119.99977 * 180.02562 * 20 19 3 23 23 C 1.53004 * 109.47149 * 180.02562 * 22 20 19 24 24 H 1.08999 * 110.34319 * 55.82957 * 23 22 20 25 25 C 1.51106 * 110.38535 * 293.54453 * 23 22 20 26 26 C 1.30528 * 111.10324 * 224.63445 * 25 23 22 27 27 C 1.51097 * 111.10203 * 0.02562 * 26 25 23 28 28 C 1.54631 * 110.48453 * 178.18525 * 23 22 20 29 29 H 1.09003 * 109.46634 * 300.00109 * 1 2 3 30 30 H 1.08998 * 109.46777 * 59.99601 * 1 2 3 31 31 H 1.08994 * 109.47300 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46634 * 239.99891 * 2 1 3 33 33 H 1.08998 * 109.46777 * 120.00399 * 2 1 3 34 34 H 1.08996 * 109.47062 * 305.00459 * 5 3 2 35 35 H 1.09002 * 109.46637 * 65.00030 * 5 3 2 36 36 H 0.97006 * 120.00182 * 0.02562 * 6 5 3 37 37 H 1.08999 * 109.46618 * 299.99881 * 9 7 6 38 38 H 1.08999 * 109.47032 * 59.99963 * 9 7 6 39 39 H 0.97003 * 120.00377 * 179.97438 * 14 13 11 40 40 H 0.96999 * 120.00006 * 95.00207 * 19 3 2 41 41 H 1.08996 * 109.47252 * 60.00445 * 22 20 19 42 42 H 1.09000 * 109.47195 * 299.99378 * 22 20 19 43 43 H 1.07997 * 124.44647 * 44.37373 * 25 23 22 44 44 H 1.07996 * 124.44406 * 179.97438 * 26 25 23 45 45 H 1.08998 * 110.38609 * 257.61953 * 27 26 25 46 46 H 1.09001 * 110.48258 * 135.29661 * 27 26 25 47 47 H 1.09002 * 111.03445 * 261.52495 * 28 23 22 48 48 H 1.09002 * 111.03910 * 25.46464 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 7 4.0632 2.8166 -0.0060 7 6 5.3859 3.0628 -0.0859 8 8 6.1636 2.1480 -0.2573 9 6 5.8985 4.4745 0.0379 10 16 7.7023 4.4766 -0.1110 11 6 8.0219 6.2004 0.0646 12 1 7.2031 6.8890 0.2126 13 6 9.3258 6.6734 0.0128 14 7 10.3235 5.8342 -0.1680 15 14 9.6644 8.5011 0.1984 16 1 9.1667 8.9652 1.5183 17 1 11.1262 8.7455 0.1063 18 1 8.9694 9.2455 -0.8824 19 7 1.6526 2.0974 1.2518 20 6 0.4353 2.6643 1.3670 21 8 -0.3391 2.6327 0.4342 22 6 0.0369 3.3386 2.6545 23 6 -1.3824 3.8943 2.5213 24 1 -2.0745 3.1018 2.2366 25 6 -1.4165 5.0129 1.5060 26 6 -2.1135 6.0253 1.9454 27 6 -2.6598 5.7509 3.3271 28 6 -1.8325 4.5523 3.8463 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9955 0.8310 0.6658 35 1 3.8499 1.0376 -1.0961 36 1 3.4412 3.5482 0.1315 37 1 5.4682 5.0879 -0.7538 38 1 5.6132 4.8809 1.0082 39 1 11.2348 6.1648 -0.2046 40 1 2.2721 2.1230 1.9977 41 1 0.7283 4.1541 2.8667 42 1 0.0682 2.6145 3.4687 43 1 -0.9250 4.9807 0.5449 44 1 -2.2774 6.9393 1.3940 45 1 -3.7160 5.4873 3.2724 46 1 -2.5187 6.6181 3.9722 47 1 -2.4526 3.8720 4.4301 48 1 -0.9741 4.8917 4.4261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738104626.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:16 Heat of formation + Delta-G solvation = -97.560909 kcal Electronic energy + Delta-G solvation = -26816.849686 eV Core-core repulsion = 22996.576645 eV Total energy + Delta-G solvation = -3820.273041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.35827 -40.52469 -39.32399 -37.46059 -34.96901 -34.57868 -33.63510 -32.10555 -31.42371 -29.76543 -29.03392 -27.64510 -26.33741 -24.32442 -22.40768 -21.65917 -21.43735 -21.20501 -19.88698 -19.57175 -18.09015 -17.83632 -17.57766 -16.99246 -16.87450 -16.75655 -16.56345 -16.43994 -15.84731 -15.62537 -14.90657 -14.80560 -14.63150 -14.47864 -14.40541 -13.99871 -13.59645 -13.44816 -13.16751 -12.99875 -12.86292 -12.84065 -12.77356 -12.65675 -12.64772 -12.46555 -12.19752 -12.05412 -11.95961 -11.79758 -11.73601 -11.60491 -11.12755 -10.98869 -10.67802 -10.27985 -10.16755 -9.99352 -9.76152 -8.66136 -8.34346 -6.12214 1.26737 1.42009 1.43944 1.46744 1.56331 1.59966 1.76262 2.15168 2.27467 2.33260 2.99767 3.31938 3.55693 3.67742 3.76072 3.91831 4.00084 4.04405 4.06671 4.14249 4.28653 4.38438 4.41074 4.50905 4.53159 4.56237 4.61493 4.68990 4.69921 4.80695 4.82245 4.94633 4.99808 5.03614 5.09345 5.12741 5.18484 5.30950 5.36646 5.41933 5.43608 5.46838 5.55988 5.72785 6.02104 6.19792 6.43445 6.61197 7.07032 7.20539 7.35742 8.74481 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010198 B = 0.002412 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.078621 B =11607.292981 C =13963.245707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.147 3.853 4 H 0.082 0.918 5 C 0.116 3.884 6 N -0.712 5.712 7 C 0.536 3.464 8 O -0.562 6.562 9 C -0.131 4.131 10 S -0.148 6.148 11 C -0.547 4.547 12 H 0.082 0.918 13 C 0.014 3.986 14 N -0.911 5.911 15 Si 0.997 3.003 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.264 1.264 19 N -0.721 5.721 20 C 0.513 3.487 21 O -0.562 6.562 22 C -0.130 4.130 23 C -0.050 4.050 24 H 0.073 0.927 25 C -0.161 4.161 26 C -0.183 4.183 27 C -0.102 4.102 28 C -0.118 4.118 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.412 0.588 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.271 0.729 40 H 0.412 0.588 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.123 0.877 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.943 -5.643 8.872 29.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.042 3.958 4 H 0.100 0.900 5 C -0.008 4.008 6 N -0.366 5.366 7 C 0.322 3.678 8 O -0.440 6.440 9 C -0.282 4.282 10 S 0.079 5.921 11 C -0.695 4.695 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.185 1.185 17 H -0.204 1.204 18 H -0.188 1.188 19 N -0.374 5.374 20 C 0.301 3.699 21 O -0.440 6.440 22 C -0.170 4.170 23 C -0.069 4.069 24 H 0.092 0.908 25 C -0.179 4.179 26 C -0.201 4.201 27 C -0.139 4.139 28 C -0.155 4.155 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.249 0.751 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.249 0.751 41 H 0.125 0.875 42 H 0.136 0.864 43 H 0.124 0.876 44 H 0.141 0.859 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.104 0.896 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -27.044 -7.235 7.905 29.090 hybrid contribution -0.261 2.231 0.107 2.248 sum -27.306 -5.004 8.012 28.893 Atomic orbital electron populations 1.21692 0.95175 1.00724 1.01733 1.21860 0.96431 0.94656 1.03718 1.21098 0.91745 0.94888 0.88086 0.89968 1.21699 0.92663 0.83110 1.03340 1.45703 1.05995 1.10459 1.74456 1.19993 0.82685 0.89753 0.75347 1.90704 1.57004 1.46988 1.49293 1.23375 1.01082 0.97115 1.06649 1.85546 0.99302 1.11841 1.95392 1.23168 0.96120 0.92590 1.57647 0.89990 1.26109 0.94748 1.04382 0.93856 1.70168 1.00032 1.37184 1.47312 0.85027 0.77348 0.76306 0.79468 1.18539 1.20423 1.18837 1.46090 1.17034 1.57706 1.16595 1.21053 0.81016 0.77430 0.90381 1.90721 1.51831 1.59652 1.41844 1.21772 0.98018 1.01953 0.95227 1.20764 0.95459 0.96455 0.94172 0.90847 1.23315 0.99962 0.95451 0.99155 1.23500 0.99431 0.98851 0.98321 1.21388 0.99843 0.98871 0.93783 1.22575 1.00380 0.96827 0.95725 0.93336 0.93872 0.92679 0.90037 0.90369 0.90423 0.90591 0.75132 0.87701 0.87034 0.91986 0.75144 0.87455 0.86405 0.87626 0.85920 0.90550 0.90375 0.89615 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.52 71.98 0.61 -1.62 16 2 C -0.13 -1.75 5.61 30.59 0.17 -1.58 16 3 C 0.15 2.22 2.42 44.99 0.11 2.32 16 4 H 0.08 1.53 7.58 -2.39 -0.02 1.51 16 5 C 0.12 2.19 5.23 86.38 0.45 2.64 16 6 N -0.71 -16.18 5.39 -463.07 -2.49 -18.67 16 7 C 0.54 18.58 7.85 87.66 0.69 19.26 16 8 O -0.56 -24.71 15.86 -3.03 -0.05 -24.76 16 9 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 10 S -0.15 -8.06 20.57 -56.49 -1.16 -9.22 16 11 C -0.55 -30.87 9.50 67.95 0.65 -30.22 16 12 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 13 C 0.01 0.79 5.49 84.86 0.47 1.25 16 14 N -0.91 -55.47 13.22 21.65 0.29 -55.18 16 15 Si 1.00 43.13 29.55 68.60 2.03 45.15 16 16 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 19 N -0.72 -8.89 4.47 -442.54 -1.98 -10.87 16 20 C 0.51 7.76 6.16 87.66 0.54 8.30 16 21 O -0.56 -12.47 11.82 -3.03 -0.04 -12.51 16 22 C -0.13 -1.33 5.12 29.85 0.15 -1.17 16 23 C -0.05 -0.67 2.54 -10.85 -0.03 -0.70 16 24 H 0.07 1.20 8.01 -2.39 -0.02 1.18 16 25 C -0.16 -2.81 9.19 26.26 0.24 -2.57 16 26 C -0.18 -2.83 10.78 26.26 0.28 -2.55 16 27 C -0.10 -1.17 6.81 30.52 0.21 -0.96 16 28 C -0.12 -1.14 6.71 31.70 0.21 -0.92 16 29 H 0.05 0.87 5.65 -2.39 -0.01 0.86 16 30 H 0.04 0.86 7.85 -2.39 -0.02 0.84 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.41 7.42 8.14 -92.70 -0.75 6.67 16 37 H 0.10 3.69 8.14 -2.40 -0.02 3.67 16 38 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 39 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.41 3.68 8.60 -92.71 -0.80 2.88 16 41 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.11 2.24 7.31 -2.91 -0.02 2.22 16 44 H 0.12 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.08 0.66 7.92 -2.39 -0.02 0.64 16 Total: -1.00 -77.33 403.21 1.20 -76.13 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.59 Total: 23.00 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 5.19 Total: -13.07 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -4.19 Total: -84.72 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.08 Total: -37.27 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.22 kcal Total: -77.33 1.20 -76.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738104626.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.431 kcal (2) G-P(sol) polarization free energy of solvation -77.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds