Wall clock time and date at job start Sat Apr 11 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46646 * 2 1 4 4 H 1.09000 * 109.47050 * 55.00158 * 3 2 1 5 5 C 1.52999 * 109.46626 * 174.99857 * 3 2 1 6 6 N 1.46504 * 109.46785 * 174.99920 * 5 3 2 7 7 C 1.34773 * 119.99895 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00530 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.00090 * 180.02562 * 7 6 5 10 10 S 1.81003 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.76195 * 99.99690 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00388 * 359.97438 * 11 10 9 13 13 C 1.38805 * 119.99808 * 180.02562 * 11 10 9 14 14 N 1.31633 * 119.99720 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00158 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47424 * 89.99638 * 15 13 11 17 17 H 1.48504 * 109.47464 * 210.00077 * 15 13 11 18 18 H 1.48508 * 109.47130 * 329.99601 * 15 13 11 19 19 N 1.46492 * 109.47363 * 295.00018 * 3 2 1 20 20 C 1.34781 * 119.99920 * 84.99933 * 19 3 2 21 21 O 1.21274 * 119.99803 * 0.02562 * 20 19 3 22 22 C 1.50697 * 119.99747 * 180.02562 * 20 19 3 23 23 C 1.53008 * 109.47135 * 180.02562 * 22 20 19 24 24 H 1.09000 * 110.34386 * 55.82830 * 23 22 20 25 25 C 1.51103 * 110.38244 * 293.54792 * 23 22 20 26 26 C 1.30532 * 111.10135 * 224.75134 * 25 23 22 27 27 C 1.51101 * 111.10520 * 359.97438 * 26 25 23 28 28 C 1.54631 * 110.38865 * 178.24526 * 23 22 20 29 29 H 1.09002 * 109.46731 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47394 * 299.99282 * 1 2 3 31 31 H 1.08990 * 109.47621 * 60.00181 * 1 2 3 32 32 H 1.08995 * 109.47505 * 240.00459 * 2 1 3 33 33 H 1.09000 * 109.47175 * 119.99975 * 2 1 3 34 34 H 1.08998 * 109.47903 * 294.99740 * 5 3 2 35 35 H 1.09002 * 109.47016 * 55.00506 * 5 3 2 36 36 H 0.96994 * 120.00002 * 0.02562 * 6 5 3 37 37 H 1.09000 * 109.47086 * 300.00446 * 9 7 6 38 38 H 1.09002 * 109.46844 * 60.00282 * 9 7 6 39 39 H 0.97007 * 119.99506 * 180.02562 * 14 13 11 40 40 H 0.96998 * 120.00176 * 265.00572 * 19 3 2 41 41 H 1.09006 * 109.47530 * 299.99941 * 22 20 19 42 42 H 1.08998 * 109.47252 * 60.00349 * 22 20 19 43 43 H 1.07995 * 124.45078 * 44.72390 * 25 23 22 44 44 H 1.08000 * 124.44507 * 180.02562 * 26 25 23 45 45 H 1.08999 * 110.38641 * 135.24980 * 27 26 25 46 46 H 1.09003 * 110.38717 * 257.51502 * 27 26 25 47 47 H 1.09002 * 111.03271 * 261.47755 * 28 23 22 48 48 H 1.08996 * 111.03737 * 25.40599 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5647 1.4444 0.1258 6 7 4.0628 2.8170 0.0060 7 6 5.3855 3.0631 0.0858 8 8 6.1634 2.1485 0.2564 9 6 5.8979 4.4751 -0.0368 10 16 7.7019 4.4773 0.1118 11 6 8.0211 6.2012 -0.0640 12 1 7.2024 6.8896 -0.2127 13 6 9.3250 6.6743 -0.0124 14 7 10.3230 5.8350 0.1674 15 14 9.6635 8.5019 -0.1980 16 1 9.6396 9.1481 1.1387 17 1 10.9984 8.6976 -0.8187 18 1 8.6217 9.1130 -1.0620 19 7 1.6523 2.0976 -1.2517 20 6 0.4349 2.6644 -1.3668 21 8 -0.3394 2.6326 -0.4340 22 6 0.0360 3.3377 -2.6547 23 6 -1.3828 3.8945 -2.5209 24 1 -1.4473 4.5658 -1.6646 25 6 -2.3797 2.7675 -2.3824 26 6 -3.4234 2.9674 -3.1403 27 6 -3.2969 4.2614 -3.9102 28 6 -1.7976 4.6291 -3.8169 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5137 -0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8498 1.0379 1.0960 35 1 3.9953 0.8313 -0.6659 36 1 3.4408 3.5485 -0.1308 37 1 5.6124 4.8823 -1.0067 38 1 5.4677 5.0878 0.7554 39 1 11.2342 6.1657 0.2038 40 1 2.2717 2.1232 -1.9977 41 1 0.7274 4.1531 -2.8678 42 1 0.0670 2.6130 -3.4683 43 1 -2.2460 1.9090 -1.7409 44 1 -4.2670 2.2964 -3.2076 45 1 -3.5872 4.1142 -4.9505 46 1 -3.9099 5.0374 -3.4518 47 1 -1.6647 5.7062 -3.7157 48 1 -1.2465 4.2476 -4.6764 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738104627.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:20 Heat of formation + Delta-G solvation = -74.899220 kcal Electronic energy + Delta-G solvation = -26754.351905 eV Core-core repulsion = 22935.061549 eV Total energy + Delta-G solvation = -3819.290356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.64358 -39.32027 -38.62896 -36.59924 -33.83094 -32.98752 -32.45067 -31.52706 -30.08968 -29.24989 -27.95853 -25.78432 -25.48615 -23.46669 -21.69408 -20.87502 -20.64978 -20.29621 -19.03262 -17.96079 -17.29137 -16.92612 -16.32150 -16.29020 -15.82303 -15.57707 -15.45981 -15.03866 -14.82417 -14.24423 -14.03400 -13.86074 -13.62906 -13.39151 -12.99443 -12.95383 -12.63788 -12.43956 -12.27868 -12.20955 -12.16305 -11.82677 -11.79247 -11.58651 -11.49902 -11.32385 -11.10204 -11.08860 -11.08323 -11.04615 -10.78106 -9.98203 -9.84441 -9.50424 -9.29958 -9.19125 -9.09650 -8.98217 -8.26889 -6.52930 -6.24040 -3.94823 2.01358 2.39745 2.81645 2.99802 3.04916 3.20785 3.26324 3.30044 3.66362 4.18132 4.19704 4.27076 4.35911 4.50079 4.63054 4.71462 4.82476 4.88522 5.03843 5.06339 5.09715 5.11182 5.15030 5.20529 5.26579 5.30145 5.46970 5.48331 5.50339 5.54199 5.59682 5.62481 5.74887 5.75494 5.81883 5.84632 5.87559 5.93593 6.09849 6.13530 6.21905 6.30396 6.51309 6.62052 7.20510 7.57166 7.61945 7.97377 8.32828 8.54041 9.21359 10.83329 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012632 B = 0.002173 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.147047 B =12882.762109 C =14843.598969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.135 3.865 4 H 0.096 0.904 5 C 0.113 3.887 6 N -0.739 5.739 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.728 5.728 20 C 0.514 3.486 21 O -0.530 6.530 22 C -0.136 4.136 23 C -0.053 4.053 24 H 0.090 0.910 25 C -0.141 4.141 26 C -0.182 4.182 27 C -0.100 4.100 28 C -0.123 4.123 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.399 0.601 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.403 0.597 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.764 -7.468 -7.568 28.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.030 3.970 4 H 0.114 0.886 5 C -0.012 4.012 6 N -0.394 5.394 7 C 0.318 3.682 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.381 5.381 20 C 0.301 3.699 21 O -0.406 6.406 22 C -0.175 4.175 23 C -0.071 4.071 24 H 0.108 0.892 25 C -0.159 4.159 26 C -0.200 4.200 27 C -0.137 4.137 28 C -0.161 4.161 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.233 0.767 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.237 0.763 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.143 0.857 44 H 0.138 0.862 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -25.812 -9.048 -6.581 28.132 hybrid contribution -0.630 2.467 -0.680 2.636 sum -26.441 -6.581 -7.261 28.199 Atomic orbital electron populations 1.21787 0.94624 1.00596 1.03006 1.21881 0.97176 0.95200 1.02797 1.21313 0.93516 0.94318 0.87891 0.88639 1.21592 0.91552 0.84687 1.03343 1.45985 1.07810 1.08846 1.76792 1.20326 0.81353 0.91142 0.75375 1.90711 1.55430 1.46169 1.46706 1.23530 1.06873 0.95137 1.04864 1.85399 0.91932 1.10984 1.94985 1.22861 0.95435 0.92409 1.57690 0.90937 1.25000 0.95076 0.98981 0.94563 1.70020 0.99497 1.34540 1.46192 0.86163 0.77817 0.83011 0.78476 1.20256 1.20741 1.19702 1.46167 1.17023 1.58180 1.16762 1.20661 0.81254 0.78009 0.89985 1.90720 1.50793 1.58499 1.40582 1.21756 0.98372 1.01459 0.95962 1.20810 0.91940 0.95890 0.98465 0.89198 1.23311 0.95617 0.98630 0.98342 1.23261 0.99153 0.98069 0.99557 1.21340 0.96517 0.95825 0.99997 1.22568 0.95851 1.00426 0.97221 0.93578 0.92107 0.92503 0.91523 0.90683 0.90071 0.90968 0.76738 0.89267 0.89247 0.92167 0.76292 0.88524 0.88798 0.85702 0.86179 0.91386 0.90874 0.90739 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.51 37.16 0.32 -0.91 16 2 C -0.13 -1.01 5.61 -26.73 -0.15 -1.16 16 3 C 0.13 1.11 2.41 -67.93 -0.16 0.95 16 4 H 0.10 0.93 7.58 -51.93 -0.39 0.54 16 5 C 0.11 1.16 5.23 -4.04 -0.02 1.13 16 6 N -0.74 -9.04 5.39 -60.29 -0.32 -9.36 16 7 C 0.53 9.44 7.85 -10.98 -0.09 9.35 16 8 O -0.52 -11.28 15.86 5.56 0.09 -11.20 16 9 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 10 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 11 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 12 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 15 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 N -0.73 -5.22 4.47 -53.81 -0.24 -5.46 16 20 C 0.51 4.25 6.16 -10.98 -0.07 4.18 16 21 O -0.53 -5.95 11.82 5.56 0.07 -5.88 16 22 C -0.14 -0.84 5.12 -27.88 -0.14 -0.98 16 23 C -0.05 -0.39 2.54 -90.71 -0.23 -0.62 16 24 H 0.09 0.79 8.01 -51.93 -0.42 0.38 16 25 C -0.14 -1.17 9.19 -35.70 -0.33 -1.49 16 26 C -0.18 -1.35 10.77 -35.70 -0.38 -1.73 16 27 C -0.10 -0.63 6.81 -26.82 -0.18 -0.81 16 28 C -0.12 -0.74 6.71 -25.00 -0.17 -0.91 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 31 H 0.06 0.53 5.65 -51.93 -0.29 0.24 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.40 4.05 8.14 -40.82 -0.33 3.72 16 37 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 38 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.40 2.35 8.60 -40.82 -0.35 2.00 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.13 1.16 7.31 -52.49 -0.38 0.78 16 44 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.39 7.91 -51.93 -0.41 -0.02 16 LS Contribution 403.20 15.07 6.08 6.08 Total: -1.00 -34.56 403.20 -10.05 -44.62 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.03 Total: 2.60 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -1.19 Total: -8.59 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.17 Total: -40.02 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.15 Total: -17.08 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.56 -10.05 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738104627.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.281 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds