Wall clock time and date at job start Sat Apr 11 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46646 * 2 1 4 4 H 1.09000 * 109.47050 * 55.00158 * 3 2 1 5 5 C 1.52999 * 109.46626 * 174.99857 * 3 2 1 6 6 N 1.46504 * 109.46785 * 174.99920 * 5 3 2 7 7 C 1.34773 * 119.99895 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00530 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.00090 * 180.02562 * 7 6 5 10 10 S 1.81003 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.76195 * 99.99690 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00388 * 359.97438 * 11 10 9 13 13 C 1.38805 * 119.99808 * 180.02562 * 11 10 9 14 14 N 1.31633 * 119.99720 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00158 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47424 * 89.99638 * 15 13 11 17 17 H 1.48504 * 109.47464 * 210.00077 * 15 13 11 18 18 H 1.48508 * 109.47130 * 329.99601 * 15 13 11 19 19 N 1.46492 * 109.47363 * 295.00018 * 3 2 1 20 20 C 1.34781 * 119.99920 * 84.99933 * 19 3 2 21 21 O 1.21274 * 119.99803 * 0.02562 * 20 19 3 22 22 C 1.50697 * 119.99747 * 180.02562 * 20 19 3 23 23 C 1.53008 * 109.47135 * 180.02562 * 22 20 19 24 24 H 1.09000 * 110.34386 * 55.82830 * 23 22 20 25 25 C 1.51103 * 110.38244 * 293.54792 * 23 22 20 26 26 C 1.30532 * 111.10135 * 224.75134 * 25 23 22 27 27 C 1.51101 * 111.10520 * 359.97438 * 26 25 23 28 28 C 1.54631 * 110.38865 * 178.24526 * 23 22 20 29 29 H 1.09002 * 109.46731 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47394 * 299.99282 * 1 2 3 31 31 H 1.08990 * 109.47621 * 60.00181 * 1 2 3 32 32 H 1.08995 * 109.47505 * 240.00459 * 2 1 3 33 33 H 1.09000 * 109.47175 * 119.99975 * 2 1 3 34 34 H 1.08998 * 109.47903 * 294.99740 * 5 3 2 35 35 H 1.09002 * 109.47016 * 55.00506 * 5 3 2 36 36 H 0.96994 * 120.00002 * 0.02562 * 6 5 3 37 37 H 1.09000 * 109.47086 * 300.00446 * 9 7 6 38 38 H 1.09002 * 109.46844 * 60.00282 * 9 7 6 39 39 H 0.97007 * 119.99506 * 180.02562 * 14 13 11 40 40 H 0.96998 * 120.00176 * 265.00572 * 19 3 2 41 41 H 1.09006 * 109.47530 * 299.99941 * 22 20 19 42 42 H 1.08998 * 109.47252 * 60.00349 * 22 20 19 43 43 H 1.07995 * 124.45078 * 44.72390 * 25 23 22 44 44 H 1.08000 * 124.44507 * 180.02562 * 26 25 23 45 45 H 1.08999 * 110.38641 * 135.24980 * 27 26 25 46 46 H 1.09003 * 110.38717 * 257.51502 * 27 26 25 47 47 H 1.09002 * 111.03271 * 261.47755 * 28 23 22 48 48 H 1.08996 * 111.03737 * 25.40599 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5647 1.4444 0.1258 6 7 4.0628 2.8170 0.0060 7 6 5.3855 3.0631 0.0858 8 8 6.1634 2.1485 0.2564 9 6 5.8979 4.4751 -0.0368 10 16 7.7019 4.4773 0.1118 11 6 8.0211 6.2012 -0.0640 12 1 7.2024 6.8896 -0.2127 13 6 9.3250 6.6743 -0.0124 14 7 10.3230 5.8350 0.1674 15 14 9.6635 8.5019 -0.1980 16 1 9.6396 9.1481 1.1387 17 1 10.9984 8.6976 -0.8187 18 1 8.6217 9.1130 -1.0620 19 7 1.6523 2.0976 -1.2517 20 6 0.4349 2.6644 -1.3668 21 8 -0.3394 2.6326 -0.4340 22 6 0.0360 3.3377 -2.6547 23 6 -1.3828 3.8945 -2.5209 24 1 -1.4473 4.5658 -1.6646 25 6 -2.3797 2.7675 -2.3824 26 6 -3.4234 2.9674 -3.1403 27 6 -3.2969 4.2614 -3.9102 28 6 -1.7976 4.6291 -3.8169 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5137 -0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8498 1.0379 1.0960 35 1 3.9953 0.8313 -0.6659 36 1 3.4408 3.5485 -0.1308 37 1 5.6124 4.8823 -1.0067 38 1 5.4677 5.0878 0.7554 39 1 11.2342 6.1657 0.2038 40 1 2.2717 2.1232 -1.9977 41 1 0.7274 4.1531 -2.8678 42 1 0.0670 2.6130 -3.4683 43 1 -2.2460 1.9090 -1.7409 44 1 -4.2670 2.2964 -3.2076 45 1 -3.5872 4.1142 -4.9505 46 1 -3.9099 5.0374 -3.4518 47 1 -1.6647 5.7062 -3.7157 48 1 -1.2465 4.2476 -4.6764 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738104627.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:19 Heat of formation + Delta-G solvation = -97.706455 kcal Electronic energy + Delta-G solvation = -26755.340901 eV Core-core repulsion = 22935.061549 eV Total energy + Delta-G solvation = -3820.279352 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.36408 -40.52264 -39.31467 -37.46275 -34.96722 -34.57377 -33.64470 -32.09922 -31.41977 -29.77462 -29.02090 -27.64230 -26.34059 -24.33589 -22.40038 -21.64947 -21.44380 -21.20929 -19.87492 -19.59103 -18.11019 -17.81550 -17.56926 -17.10331 -16.87185 -16.64768 -16.53550 -16.28034 -15.96549 -15.74175 -14.85763 -14.81040 -14.62285 -14.46901 -14.39529 -14.00601 -13.61461 -13.42230 -13.15858 -13.03333 -12.89123 -12.82519 -12.76124 -12.65560 -12.63237 -12.48442 -12.20029 -12.04877 -11.93057 -11.77771 -11.71674 -11.63900 -11.13862 -10.98378 -10.67515 -10.26922 -10.16304 -9.99927 -9.76098 -8.65634 -8.34223 -6.11824 1.27323 1.42284 1.42848 1.47472 1.57583 1.60621 1.76085 2.15225 2.27572 2.33624 3.00023 3.32414 3.55692 3.67631 3.76281 3.92229 4.00777 4.04157 4.05927 4.14265 4.29502 4.37939 4.40846 4.51778 4.53245 4.55730 4.61019 4.68807 4.69866 4.80491 4.82534 4.94206 5.00271 5.03129 5.08576 5.12766 5.17986 5.30950 5.36850 5.42635 5.43242 5.46401 5.55907 5.72270 6.03180 6.20368 6.44417 6.61047 7.07360 7.21288 7.35518 8.74794 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012632 B = 0.002173 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.147047 B =12882.762109 C =14843.598969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.147 3.853 4 H 0.083 0.917 5 C 0.116 3.884 6 N -0.712 5.712 7 C 0.536 3.464 8 O -0.562 6.562 9 C -0.131 4.131 10 S -0.149 6.149 11 C -0.546 4.546 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.269 1.269 17 H -0.278 1.278 18 H -0.257 1.257 19 N -0.721 5.721 20 C 0.513 3.487 21 O -0.562 6.562 22 C -0.130 4.130 23 C -0.052 4.052 24 H 0.070 0.930 25 C -0.159 4.159 26 C -0.181 4.181 27 C -0.102 4.102 28 C -0.119 4.119 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.413 0.587 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.271 0.729 40 H 0.412 0.588 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.126 0.874 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.249 -6.216 -9.047 30.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.042 3.958 4 H 0.101 0.899 5 C -0.008 4.008 6 N -0.366 5.366 7 C 0.322 3.678 8 O -0.440 6.440 9 C -0.282 4.282 10 S 0.078 5.922 11 C -0.693 4.693 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.181 1.181 19 N -0.374 5.374 20 C 0.301 3.699 21 O -0.440 6.440 22 C -0.170 4.170 23 C -0.071 4.071 24 H 0.088 0.912 25 C -0.177 4.177 26 C -0.199 4.199 27 C -0.139 4.139 28 C -0.156 4.156 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.249 0.751 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.249 0.751 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.144 0.856 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -27.349 -7.793 -8.081 29.563 hybrid contribution -0.339 1.987 -0.204 2.026 sum -27.688 -5.806 -8.285 29.478 Atomic orbital electron populations 1.21701 0.95209 1.00694 1.01770 1.21861 0.96427 0.94728 1.03677 1.21096 0.91766 0.94839 0.88105 0.89882 1.21694 0.92637 0.83143 1.03321 1.45698 1.05999 1.10438 1.74463 1.20004 0.82681 0.89775 0.75333 1.90705 1.56996 1.47029 1.49316 1.23376 1.01027 0.97078 1.06701 1.85562 0.99373 1.11874 1.95390 1.23199 0.96108 0.92571 1.57470 0.89945 1.26121 0.94781 1.04390 0.93913 1.70183 1.00018 1.37080 1.47429 0.84966 0.77966 0.76294 0.78837 1.19478 1.20322 1.18119 1.46091 1.17023 1.57716 1.16594 1.21051 0.80949 0.77564 0.90307 1.90719 1.51728 1.59725 1.41877 1.21774 0.97962 1.02174 0.95057 1.20779 0.92506 0.95313 0.98511 0.91157 1.23293 0.96708 0.98824 0.98849 1.23497 0.98850 0.98537 0.99019 1.21396 0.96937 0.95114 1.00462 1.22577 0.95603 1.00715 0.96725 0.92762 0.93794 0.93289 0.90472 0.90017 0.90588 0.90479 0.75078 0.86976 0.87638 0.92018 0.75149 0.86679 0.87210 0.87362 0.85569 0.90218 0.90741 0.90049 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.51 71.98 0.61 -1.64 16 2 C -0.13 -1.77 5.61 30.60 0.17 -1.60 16 3 C 0.15 2.21 2.41 44.99 0.11 2.32 16 4 H 0.08 1.54 7.58 -2.39 -0.02 1.52 16 5 C 0.12 2.18 5.23 86.38 0.45 2.64 16 6 N -0.71 -16.00 5.39 -463.05 -2.49 -18.50 16 7 C 0.54 18.45 7.85 87.66 0.69 19.14 16 8 O -0.56 -24.67 15.86 -3.03 -0.05 -24.72 16 9 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 10 S -0.15 -8.10 20.57 -56.49 -1.16 -9.26 16 11 C -0.55 -30.63 9.50 67.96 0.65 -29.99 16 12 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 13 C 0.01 0.72 5.49 84.86 0.47 1.18 16 14 N -0.91 -55.36 13.22 21.65 0.29 -55.07 16 15 Si 1.00 43.03 29.55 68.60 2.03 45.05 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 17 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 19 N -0.72 -8.90 4.47 -442.55 -1.98 -10.88 16 20 C 0.51 7.78 6.16 87.66 0.54 8.32 16 21 O -0.56 -12.47 11.82 -3.01 -0.04 -12.51 16 22 C -0.13 -1.34 5.12 29.85 0.15 -1.19 16 23 C -0.05 -0.71 2.54 -10.85 -0.03 -0.74 16 24 H 0.07 1.22 8.01 -2.39 -0.02 1.20 16 25 C -0.16 -2.56 9.19 26.26 0.24 -2.32 16 26 C -0.18 -2.50 10.77 26.26 0.28 -2.22 16 27 C -0.10 -1.11 6.81 30.54 0.21 -0.90 16 28 C -0.12 -1.17 6.71 31.71 0.21 -0.96 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.87 7.85 -2.39 -0.02 0.85 16 31 H 0.05 0.89 5.65 -2.39 -0.01 0.88 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.41 7.25 8.14 -92.71 -0.75 6.50 16 37 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 38 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 39 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 40 H 0.41 3.69 8.60 -92.71 -0.80 2.89 16 41 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.11 2.09 7.31 -2.91 -0.02 2.06 16 44 H 0.13 1.50 8.06 -2.91 -0.02 1.48 16 45 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.08 0.65 7.91 -2.39 -0.02 0.63 16 Total: -1.00 -77.13 403.20 1.20 -75.93 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -0.59 Total: 22.41 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 5.19 Total: -12.46 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -4.19 Total: -84.44 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.08 Total: -37.23 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Total: -77.13 1.20 -75.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738104627.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.777 kcal (2) G-P(sol) polarization free energy of solvation -77.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds