Wall clock time and date at job start Sat Apr 11 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46975 * 2 1 4 4 H 1.09000 * 109.47321 * 304.99972 * 3 2 1 5 5 C 1.53004 * 109.47023 * 185.00191 * 3 2 1 6 6 N 1.46499 * 109.47198 * 185.00121 * 5 3 2 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 3 8 8 O 1.21283 * 119.99990 * 359.71991 * 7 6 5 9 9 C 1.50698 * 119.99538 * 179.72653 * 7 6 5 10 10 S 1.81005 * 109.46906 * 179.97438 * 9 7 6 11 11 C 1.76201 * 99.99828 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00390 * 359.97438 * 11 10 9 13 13 C 1.38797 * 119.99869 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99970 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00277 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46837 * 90.00131 * 15 13 11 17 17 H 1.48499 * 109.47248 * 210.00232 * 15 13 11 18 18 H 1.48498 * 109.46779 * 330.00348 * 15 13 11 19 19 N 1.46494 * 109.47389 * 65.00406 * 3 2 1 20 20 C 1.34776 * 120.00207 * 275.00150 * 19 3 2 21 21 O 1.21287 * 120.00006 * 359.97438 * 20 19 3 22 22 C 1.50692 * 120.00397 * 179.97438 * 20 19 3 23 23 C 1.53005 * 109.47345 * 179.97438 * 22 20 19 24 24 H 1.08997 * 110.34477 * 304.16095 * 23 22 20 25 25 C 1.51100 * 110.38644 * 66.45158 * 23 22 20 26 26 C 1.30526 * 111.10246 * 135.25125 * 25 23 22 27 27 C 1.51100 * 111.10621 * 359.97438 * 26 25 23 28 28 C 1.54636 * 104.72759 * 343.57011 * 27 26 25 29 29 H 1.08995 * 109.47319 * 59.99681 * 1 2 3 30 30 H 1.09000 * 109.47243 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46778 * 299.99815 * 1 2 3 32 32 H 1.08998 * 109.46778 * 240.00185 * 2 1 3 33 33 H 1.08995 * 109.47319 * 120.00319 * 2 1 3 34 34 H 1.09009 * 109.46730 * 64.99908 * 5 3 2 35 35 H 1.08998 * 109.46846 * 305.00453 * 5 3 2 36 36 H 0.97001 * 119.99790 * 359.97438 * 6 5 3 37 37 H 1.09003 * 109.47112 * 299.99065 * 9 7 6 38 38 H 1.08993 * 109.47916 * 59.99687 * 9 7 6 39 39 H 0.97008 * 120.00004 * 179.97438 * 14 13 11 40 40 H 0.97000 * 120.00254 * 94.99110 * 19 3 2 41 41 H 1.09004 * 109.46942 * 299.99496 * 22 20 19 42 42 H 1.09002 * 109.47526 * 59.99806 * 22 20 19 43 43 H 1.07994 * 124.44656 * 315.22555 * 25 23 22 44 44 H 1.08003 * 124.44929 * 179.97438 * 26 25 23 45 45 H 1.09007 * 110.38317 * 102.37666 * 27 26 25 46 46 H 1.08997 * 110.39321 * 224.63754 * 27 26 25 47 47 H 1.08999 * 111.03053 * 266.59789 * 28 27 26 48 48 H 1.08996 * 111.03878 * 142.66361 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1258 6 7 4.0631 2.8168 -0.0060 7 6 5.3853 3.0636 -0.0920 8 8 6.1630 2.1488 -0.2635 9 6 5.8972 4.4761 0.0250 10 16 7.7007 4.4789 -0.1296 11 6 8.0194 6.2036 0.0388 12 1 7.2008 6.8922 0.1870 13 6 9.3228 6.6773 -0.0188 14 7 10.3207 5.8381 -0.1999 15 14 9.6608 8.5059 0.1590 16 1 9.8688 8.8336 1.5924 17 1 10.8793 8.8613 -0.6118 18 1 8.5031 9.2762 -0.3620 19 7 1.6526 2.0975 1.2518 20 6 0.4353 2.6643 1.3671 21 8 -0.3393 2.6326 0.4343 22 6 0.0364 3.3376 2.6549 23 6 -1.3824 3.8945 2.5212 24 1 -1.4468 4.5659 1.6650 25 6 -2.3793 2.7676 2.3827 26 6 -3.4230 2.9676 3.1406 27 6 -3.2958 4.2609 3.9115 28 6 -1.7967 4.6287 3.8178 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8498 1.0377 -1.0962 35 1 3.9954 0.8310 0.6658 36 1 3.4410 3.5483 0.1308 37 1 5.4634 5.0866 -0.7669 38 1 5.6155 4.8855 0.9951 39 1 11.2316 6.1693 -0.2406 40 1 2.2720 2.1230 1.9978 41 1 0.0675 2.6128 3.4685 42 1 0.7278 4.1529 2.8680 43 1 -2.2460 1.9096 1.7406 44 1 -4.2667 2.2967 3.2080 45 1 -3.9068 5.0382 3.4523 46 1 -3.5882 4.1138 4.9511 47 1 -1.2458 4.2466 4.6772 48 1 -1.6636 5.7057 3.7170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738104628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:23 Heat of formation + Delta-G solvation = -74.914230 kcal Electronic energy + Delta-G solvation = -26753.079062 eV Core-core repulsion = 22933.788055 eV Total energy + Delta-G solvation = -3819.291007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.64254 -39.32020 -38.62906 -36.59822 -33.83056 -32.98753 -32.45072 -31.52724 -30.09010 -29.25109 -27.95856 -25.78364 -25.48653 -23.46688 -21.69412 -20.87514 -20.65009 -20.29635 -19.03267 -17.96046 -17.29065 -16.92649 -16.32200 -16.29039 -15.82299 -15.57714 -15.46021 -15.03903 -14.82425 -14.24382 -14.03360 -13.86097 -13.62895 -13.39122 -12.99356 -12.95328 -12.63794 -12.43833 -12.27816 -12.21004 -12.16346 -11.82694 -11.79194 -11.58749 -11.50034 -11.32384 -11.10250 -11.09014 -11.08087 -11.04749 -10.78081 -9.98158 -9.84430 -9.50449 -9.29983 -9.19152 -9.09680 -8.98205 -8.26894 -6.52919 -6.23995 -3.94839 2.01353 2.39703 2.81649 2.99644 3.05016 3.20647 3.26281 3.30265 3.66375 4.18130 4.19628 4.27129 4.35866 4.50060 4.63038 4.71471 4.82497 4.88599 5.03757 5.06292 5.09703 5.11227 5.15022 5.20490 5.26564 5.30160 5.46920 5.48295 5.50305 5.54126 5.59703 5.62483 5.74944 5.75484 5.81897 5.84641 5.87529 5.93563 6.09864 6.13522 6.21902 6.30381 6.51320 6.62052 7.20510 7.57198 7.61920 7.97371 8.32859 8.54023 9.21397 10.83359 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.002171 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.151492 B =12893.742085 C =14850.524519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.135 3.865 4 H 0.096 0.904 5 C 0.113 3.887 6 N -0.739 5.739 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.728 5.728 20 C 0.514 3.486 21 O -0.530 6.530 22 C -0.136 4.136 23 C -0.052 4.052 24 H 0.090 0.910 25 C -0.141 4.141 26 C -0.182 4.182 27 C -0.100 4.100 28 C -0.123 4.123 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.399 0.601 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.403 0.597 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.755 -7.477 7.658 28.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.030 3.970 4 H 0.114 0.886 5 C -0.012 4.012 6 N -0.394 5.394 7 C 0.318 3.682 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.381 5.381 20 C 0.301 3.699 21 O -0.406 6.406 22 C -0.175 4.175 23 C -0.071 4.071 24 H 0.108 0.892 25 C -0.159 4.159 26 C -0.200 4.200 27 C -0.137 4.137 28 C -0.161 4.161 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.237 0.763 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.143 0.857 44 H 0.138 0.862 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.803 -9.056 6.662 28.146 hybrid contribution -0.629 2.467 0.685 2.637 sum -26.432 -6.589 7.347 28.215 Atomic orbital electron populations 1.21788 0.94622 1.00596 1.03007 1.21880 0.97177 0.95200 1.02798 1.21314 0.93517 0.94317 0.87888 0.88641 1.21592 0.91550 0.84692 1.03342 1.45987 1.07848 1.08837 1.76762 1.20326 0.81351 0.91148 0.75367 1.90712 1.55426 1.46183 1.46694 1.23528 1.06874 0.95127 1.04876 1.85401 0.91990 1.10916 1.95001 1.22859 0.95470 0.92345 1.57715 0.90936 1.24998 0.95080 0.98985 0.94548 1.70019 0.99517 1.34578 1.46141 0.86164 0.78001 0.82985 0.78330 1.20261 1.20736 1.19695 1.46165 1.17022 1.58173 1.16761 1.20664 0.81256 0.78010 0.89988 1.90724 1.50781 1.58508 1.40593 1.21755 0.98374 1.01457 0.95960 1.20812 0.91941 0.95892 0.98456 0.89194 1.23308 0.95614 0.98629 0.98349 1.23260 0.99149 0.98071 0.99557 1.21338 0.96523 0.95828 0.99994 1.22569 0.95857 1.00427 0.97214 0.92113 0.93576 0.92497 0.90684 0.91521 0.90075 0.90966 0.76737 0.89242 0.89267 0.92166 0.76289 0.88798 0.88525 0.85700 0.86178 0.90894 0.91370 0.90853 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.52 37.16 0.32 -0.91 16 2 C -0.13 -1.01 5.61 -26.73 -0.15 -1.16 16 3 C 0.13 1.11 2.42 -67.93 -0.16 0.95 16 4 H 0.10 0.93 7.58 -51.93 -0.39 0.54 16 5 C 0.11 1.16 5.23 -4.04 -0.02 1.13 16 6 N -0.74 -9.04 5.39 -60.29 -0.32 -9.36 16 7 C 0.53 9.44 7.85 -10.99 -0.09 9.35 16 8 O -0.52 -11.28 15.86 5.55 0.09 -11.20 16 9 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 10 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 11 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 12 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -25.94 13.22 55.49 0.73 -25.20 16 15 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 N -0.73 -5.21 4.47 -53.81 -0.24 -5.45 16 20 C 0.51 4.24 6.16 -10.99 -0.07 4.18 16 21 O -0.53 -5.95 11.82 5.55 0.07 -5.89 16 22 C -0.14 -0.84 5.11 -27.88 -0.14 -0.98 16 23 C -0.05 -0.39 2.55 -90.70 -0.23 -0.62 16 24 H 0.09 0.79 8.01 -51.93 -0.42 0.38 16 25 C -0.14 -1.17 9.19 -35.70 -0.33 -1.49 16 26 C -0.18 -1.35 10.77 -35.70 -0.38 -1.73 16 27 C -0.10 -0.63 6.81 -26.83 -0.18 -0.81 16 28 C -0.12 -0.74 6.71 -25.00 -0.17 -0.90 16 29 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.53 5.65 -51.93 -0.29 0.24 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.40 4.05 8.14 -40.82 -0.33 3.72 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 38 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.40 2.35 8.60 -40.82 -0.35 2.00 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.13 1.16 7.31 -52.49 -0.38 0.78 16 44 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 45 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.39 7.91 -51.93 -0.41 -0.02 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 403.20 15.07 6.08 6.08 Total: -1.00 -34.57 403.20 -10.05 -44.62 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -8.03 Total: 2.59 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.19 Total: -8.58 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.17 Total: -40.02 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.15 Total: -17.08 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.57 -10.05 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738104628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.289 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds