Wall clock time and date at job start Sat Apr 11 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46975 * 2 1 4 4 H 1.09000 * 109.47321 * 304.99972 * 3 2 1 5 5 C 1.53004 * 109.47023 * 185.00191 * 3 2 1 6 6 N 1.46499 * 109.47198 * 185.00121 * 5 3 2 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 3 8 8 O 1.21283 * 119.99990 * 359.71991 * 7 6 5 9 9 C 1.50698 * 119.99538 * 179.72653 * 7 6 5 10 10 S 1.81005 * 109.46906 * 179.97438 * 9 7 6 11 11 C 1.76201 * 99.99828 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00390 * 359.97438 * 11 10 9 13 13 C 1.38797 * 119.99869 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99970 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00277 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46837 * 90.00131 * 15 13 11 17 17 H 1.48499 * 109.47248 * 210.00232 * 15 13 11 18 18 H 1.48498 * 109.46779 * 330.00348 * 15 13 11 19 19 N 1.46494 * 109.47389 * 65.00406 * 3 2 1 20 20 C 1.34776 * 120.00207 * 275.00150 * 19 3 2 21 21 O 1.21287 * 120.00006 * 359.97438 * 20 19 3 22 22 C 1.50692 * 120.00397 * 179.97438 * 20 19 3 23 23 C 1.53005 * 109.47345 * 179.97438 * 22 20 19 24 24 H 1.08997 * 110.34477 * 304.16095 * 23 22 20 25 25 C 1.51100 * 110.38644 * 66.45158 * 23 22 20 26 26 C 1.30526 * 111.10246 * 135.25125 * 25 23 22 27 27 C 1.51100 * 111.10621 * 359.97438 * 26 25 23 28 28 C 1.54636 * 104.72759 * 343.57011 * 27 26 25 29 29 H 1.08995 * 109.47319 * 59.99681 * 1 2 3 30 30 H 1.09000 * 109.47243 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46778 * 299.99815 * 1 2 3 32 32 H 1.08998 * 109.46778 * 240.00185 * 2 1 3 33 33 H 1.08995 * 109.47319 * 120.00319 * 2 1 3 34 34 H 1.09009 * 109.46730 * 64.99908 * 5 3 2 35 35 H 1.08998 * 109.46846 * 305.00453 * 5 3 2 36 36 H 0.97001 * 119.99790 * 359.97438 * 6 5 3 37 37 H 1.09003 * 109.47112 * 299.99065 * 9 7 6 38 38 H 1.08993 * 109.47916 * 59.99687 * 9 7 6 39 39 H 0.97008 * 120.00004 * 179.97438 * 14 13 11 40 40 H 0.97000 * 120.00254 * 94.99110 * 19 3 2 41 41 H 1.09004 * 109.46942 * 299.99496 * 22 20 19 42 42 H 1.09002 * 109.47526 * 59.99806 * 22 20 19 43 43 H 1.07994 * 124.44656 * 315.22555 * 25 23 22 44 44 H 1.08003 * 124.44929 * 179.97438 * 26 25 23 45 45 H 1.09007 * 110.38317 * 102.37666 * 27 26 25 46 46 H 1.08997 * 110.39321 * 224.63754 * 27 26 25 47 47 H 1.08999 * 111.03053 * 266.59789 * 28 27 26 48 48 H 1.08996 * 111.03878 * 142.66361 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1258 6 7 4.0631 2.8168 -0.0060 7 6 5.3853 3.0636 -0.0920 8 8 6.1630 2.1488 -0.2635 9 6 5.8972 4.4761 0.0250 10 16 7.7007 4.4789 -0.1296 11 6 8.0194 6.2036 0.0388 12 1 7.2008 6.8922 0.1870 13 6 9.3228 6.6773 -0.0188 14 7 10.3207 5.8381 -0.1999 15 14 9.6608 8.5059 0.1590 16 1 9.8688 8.8336 1.5924 17 1 10.8793 8.8613 -0.6118 18 1 8.5031 9.2762 -0.3620 19 7 1.6526 2.0975 1.2518 20 6 0.4353 2.6643 1.3671 21 8 -0.3393 2.6326 0.4343 22 6 0.0364 3.3376 2.6549 23 6 -1.3824 3.8945 2.5212 24 1 -1.4468 4.5659 1.6650 25 6 -2.3793 2.7676 2.3827 26 6 -3.4230 2.9676 3.1406 27 6 -3.2958 4.2609 3.9115 28 6 -1.7967 4.6287 3.8178 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8498 1.0377 -1.0962 35 1 3.9954 0.8310 0.6658 36 1 3.4410 3.5483 0.1308 37 1 5.4634 5.0866 -0.7669 38 1 5.6155 4.8855 0.9951 39 1 11.2316 6.1693 -0.2406 40 1 2.2720 2.1230 1.9978 41 1 0.0675 2.6128 3.4685 42 1 0.7278 4.1529 2.8680 43 1 -2.2460 1.9096 1.7406 44 1 -4.2667 2.2967 3.2080 45 1 -3.9068 5.0382 3.4523 46 1 -3.5882 4.1138 4.9511 47 1 -1.2458 4.2466 4.6772 48 1 -1.6636 5.7057 3.7170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738104628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:22 Heat of formation + Delta-G solvation = -97.728688 kcal Electronic energy + Delta-G solvation = -26754.068371 eV Core-core repulsion = 22933.788055 eV Total energy + Delta-G solvation = -3820.280316 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.36284 -40.52225 -39.31480 -37.46158 -34.96687 -34.57407 -33.64453 -32.09902 -31.42048 -29.77538 -29.02080 -27.64296 -26.33947 -24.33618 -22.40022 -21.64900 -21.44422 -21.20934 -19.87480 -19.59076 -18.10977 -17.81475 -17.57003 -17.10336 -16.87226 -16.64764 -16.53531 -16.28050 -15.96610 -15.74136 -14.85712 -14.81041 -14.62322 -14.46961 -14.39449 -14.00474 -13.61423 -13.42201 -13.15894 -13.03110 -12.88785 -12.82604 -12.76131 -12.65548 -12.63429 -12.48537 -12.20044 -12.05004 -11.93067 -11.77786 -11.71929 -11.63920 -11.13685 -10.98430 -10.67440 -10.26960 -10.16273 -9.99935 -9.76099 -8.65638 -8.34200 -6.11864 1.27277 1.42302 1.42863 1.47380 1.57615 1.60596 1.76080 2.15212 2.27549 2.33665 3.00017 3.32390 3.55652 3.67598 3.76375 3.92216 4.00818 4.04166 4.05930 4.14283 4.29488 4.37977 4.40942 4.51769 4.53238 4.55715 4.60973 4.68755 4.69876 4.80515 4.82582 4.94220 5.00323 5.03020 5.08618 5.12856 5.17939 5.30997 5.36832 5.42639 5.43242 5.46416 5.55922 5.72281 6.03203 6.20368 6.44381 6.61104 7.07377 7.21257 7.35559 8.74800 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.002171 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.151492 B =12893.742085 C =14850.524519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.147 3.853 4 H 0.083 0.917 5 C 0.116 3.884 6 N -0.712 5.712 7 C 0.536 3.464 8 O -0.562 6.562 9 C -0.131 4.131 10 S -0.149 6.149 11 C -0.546 4.546 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.259 1.259 19 N -0.721 5.721 20 C 0.513 3.487 21 O -0.562 6.562 22 C -0.130 4.130 23 C -0.052 4.052 24 H 0.070 0.930 25 C -0.159 4.159 26 C -0.181 4.181 27 C -0.102 4.102 28 C -0.119 4.119 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.413 0.587 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.271 0.729 40 H 0.412 0.588 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.126 0.874 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.233 -6.226 9.142 30.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.042 3.958 4 H 0.101 0.899 5 C -0.008 4.008 6 N -0.366 5.366 7 C 0.322 3.678 8 O -0.440 6.440 9 C -0.282 4.282 10 S 0.078 5.922 11 C -0.693 4.693 12 H 0.100 0.900 13 C -0.192 4.192 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.183 1.183 19 N -0.374 5.374 20 C 0.301 3.699 21 O -0.441 6.441 22 C -0.170 4.170 23 C -0.071 4.071 24 H 0.088 0.912 25 C -0.177 4.177 26 C -0.199 4.199 27 C -0.139 4.139 28 C -0.156 4.156 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.249 0.751 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.249 0.751 41 H 0.128 0.872 42 H 0.133 0.867 43 H 0.126 0.874 44 H 0.144 0.856 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -27.332 -7.801 8.168 29.574 hybrid contribution -0.341 1.987 0.211 2.027 sum -27.673 -5.815 8.379 29.493 Atomic orbital electron populations 1.21703 0.95209 1.00694 1.01770 1.21860 0.96427 0.94727 1.03679 1.21096 0.91767 0.94838 0.88104 0.89891 1.21694 0.92636 0.83150 1.03318 1.45699 1.06037 1.10428 1.74431 1.20003 0.82681 0.89780 0.75326 1.90705 1.56993 1.47041 1.49304 1.23374 1.01031 0.97068 1.06710 1.85564 0.99426 1.11804 1.95410 1.23196 0.96143 0.92508 1.57498 0.89951 1.26119 0.94783 1.04403 0.93891 1.70182 1.00038 1.37113 1.47380 0.84966 0.78111 0.76293 0.78692 1.19193 1.20426 1.18301 1.46089 1.17023 1.57707 1.16592 1.21054 0.80951 0.77564 0.90310 1.90722 1.51718 1.59736 1.41890 1.21773 0.97961 1.02174 0.95054 1.20781 0.92510 0.95314 0.98503 0.91155 1.23291 0.96706 0.98824 0.98854 1.23495 0.98846 0.98539 0.99020 1.21394 0.96946 0.95114 1.00459 1.22577 0.95607 1.00717 0.96716 0.93806 0.92760 0.93281 0.90024 0.90464 0.90602 0.90466 0.75077 0.87651 0.86961 0.92017 0.75142 0.87207 0.86675 0.87363 0.85570 0.90767 0.90198 0.89673 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.52 71.98 0.61 -1.64 16 2 C -0.13 -1.77 5.61 30.60 0.17 -1.60 16 3 C 0.15 2.21 2.42 44.99 0.11 2.32 16 4 H 0.08 1.54 7.58 -2.39 -0.02 1.52 16 5 C 0.12 2.18 5.23 86.38 0.45 2.63 16 6 N -0.71 -16.00 5.39 -463.05 -2.49 -18.50 16 7 C 0.54 18.46 7.85 87.66 0.69 19.14 16 8 O -0.56 -24.68 15.86 -3.04 -0.05 -24.72 16 9 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 10 S -0.15 -8.10 20.57 -56.49 -1.16 -9.26 16 11 C -0.55 -30.64 9.50 67.95 0.65 -29.99 16 12 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 13 C 0.01 0.72 5.49 84.86 0.47 1.19 16 14 N -0.91 -55.36 13.22 21.65 0.29 -55.07 16 15 Si 1.00 43.03 29.55 68.60 2.03 45.06 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 18 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 19 N -0.72 -8.89 4.47 -442.55 -1.98 -10.87 16 20 C 0.51 7.77 6.16 87.65 0.54 8.31 16 21 O -0.56 -12.48 11.82 -3.05 -0.04 -12.51 16 22 C -0.13 -1.33 5.11 29.85 0.15 -1.18 16 23 C -0.05 -0.71 2.55 -10.85 -0.03 -0.74 16 24 H 0.07 1.22 8.01 -2.39 -0.02 1.20 16 25 C -0.16 -2.56 9.19 26.26 0.24 -2.32 16 26 C -0.18 -2.50 10.77 26.26 0.28 -2.22 16 27 C -0.10 -1.11 6.81 30.53 0.21 -0.90 16 28 C -0.12 -1.17 6.71 31.71 0.21 -0.96 16 29 H 0.04 0.87 7.85 -2.39 -0.02 0.85 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.89 5.65 -2.39 -0.01 0.88 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.41 7.25 8.14 -92.71 -0.75 6.50 16 37 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 38 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 39 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 40 H 0.41 3.68 8.60 -92.71 -0.80 2.88 16 41 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.11 2.09 7.31 -2.91 -0.02 2.06 16 44 H 0.13 1.50 8.06 -2.91 -0.02 1.48 16 45 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.08 0.65 7.91 -2.39 -0.02 0.63 16 48 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -77.15 403.20 1.20 -75.95 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.59 Total: 22.38 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 5.19 Total: -12.46 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -4.19 Total: -84.43 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.08 Total: -37.24 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Total: -77.15 1.20 -75.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738104628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.780 kcal (2) G-P(sol) polarization free energy of solvation -77.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds