Wall clock time and date at job start Sat Apr 11 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00205 * 2 1 4 4 H 1.09003 * 109.46921 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47222 * 120.00212 * 3 2 1 6 6 C 1.52998 * 109.47016 * 295.14268 * 5 3 2 7 7 C 1.52999 * 109.47181 * 240.00335 * 3 2 1 8 8 C 1.50707 * 109.46968 * 173.92049 * 7 3 2 9 9 O 1.21284 * 119.99975 * 353.84298 * 8 7 3 10 10 N 1.34769 * 120.00213 * 173.84420 * 8 7 3 11 11 C 1.47072 * 136.05638 * 4.87410 * 10 8 7 12 12 C 1.53497 * 87.98435 * 207.08834 * 11 10 8 13 13 C 1.47069 * 136.06245 * 184.50167 * 10 8 7 14 14 H 1.09000 * 113.47082 * 267.69953 * 13 10 8 15 15 C 1.53005 * 113.46303 * 38.13319 * 13 10 8 16 16 N 1.46501 * 109.47022 * 184.68593 * 15 13 10 17 17 C 1.34776 * 120.00151 * 184.97421 * 16 15 13 18 18 O 1.21286 * 119.99802 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00061 * 180.02562 * 17 16 15 20 20 S 1.81004 * 109.46972 * 180.02562 * 19 17 16 21 21 C 1.76196 * 99.99811 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00235 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00168 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99509 * 359.97438 * 23 21 20 25 25 Si 1.86790 * 120.00207 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47479 * 359.97438 * 25 23 21 27 27 H 1.48507 * 109.47365 * 119.99752 * 25 23 21 28 28 H 1.48503 * 109.47090 * 239.99498 * 25 23 21 29 29 H 1.07997 * 120.00183 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99875 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99609 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47516 * 175.14064 * 5 3 2 33 33 H 1.09003 * 109.46805 * 55.13482 * 5 3 2 34 34 H 1.09002 * 109.46983 * 295.21809 * 6 5 3 35 35 H 1.08996 * 109.47446 * 175.21924 * 6 5 3 36 36 H 1.09005 * 109.47546 * 55.21291 * 6 5 3 37 37 H 1.08998 * 109.46966 * 293.91530 * 7 3 2 38 38 H 1.08993 * 109.47123 * 53.92083 * 7 3 2 39 39 H 1.09005 * 113.46804 * 321.86447 * 11 10 8 40 40 H 1.08994 * 113.46703 * 92.24422 * 11 10 8 41 41 H 1.08992 * 114.20926 * 87.52206 * 12 11 10 42 42 H 1.09007 * 114.20344 * 220.34862 * 12 11 10 43 43 H 1.08996 * 109.47270 * 304.68712 * 15 13 10 44 44 H 1.09000 * 109.46786 * 64.69295 * 15 13 10 45 45 H 0.96997 * 119.99506 * 4.97962 * 16 15 13 46 46 H 1.09003 * 109.46977 * 300.00021 * 19 17 16 47 47 H 1.08992 * 109.47149 * 60.00031 * 19 17 16 48 48 H 0.97003 * 119.99722 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3861 1.2492 6 6 2.0567 1.4271 2.4955 7 6 2.9431 1.3861 -1.2493 8 6 3.5812 2.7492 -1.3268 9 8 3.2696 3.6107 -0.5320 10 7 4.4980 3.0110 -2.2792 11 6 5.0577 2.2950 -3.4356 12 6 6.3368 3.1256 -3.2621 13 6 5.3745 4.1407 -2.6236 14 1 4.9316 4.8303 -3.3422 15 6 5.9591 4.8526 -1.4020 16 7 6.7228 6.0241 -1.8387 17 6 7.4145 6.7512 -0.9391 18 8 7.4051 6.4355 0.2319 19 6 8.1997 7.9566 -1.3881 20 16 9.0126 8.7138 0.0409 21 6 9.8340 10.0567 -0.7505 22 1 9.7364 10.1965 -1.8170 23 6 10.6073 10.9345 -0.0035 24 7 10.7266 10.7638 1.2963 25 14 11.4775 12.3586 -0.8423 26 1 11.1845 12.3297 -2.2978 27 1 10.9981 13.6405 -0.2658 28 1 12.9423 12.2378 -0.6302 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 3.5524 2.2890 1.2068 33 1 3.5924 0.5115 1.2938 34 1 1.4684 2.3447 2.4929 35 1 2.6823 1.3991 3.3876 36 1 1.3874 0.5666 2.4938 37 1 3.7203 0.6237 -1.1965 38 1 2.3311 1.2205 -2.1358 39 1 5.2044 1.2297 -3.2571 40 1 4.5307 2.4973 -4.3679 41 1 7.0598 2.6938 -2.5702 42 1 6.7814 3.4625 -4.1986 43 1 5.1497 5.1708 -0.7450 44 1 6.6169 4.1700 -0.8640 45 1 6.7306 6.2764 -2.7752 46 1 8.9529 7.6498 -2.1139 47 1 7.5252 8.6789 -1.8478 48 1 11.2668 11.3775 1.8184 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738639789.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:37 Heat of formation + Delta-G solvation = -56.130242 kcal Electronic energy + Delta-G solvation = -26461.769979 eV Core-core repulsion = 22643.293507 eV Total energy + Delta-G solvation = -3818.476472 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.71244 -40.53764 -39.43660 -37.44861 -35.77810 -34.58793 -32.69019 -32.27914 -31.43167 -30.09250 -28.79481 -27.63550 -25.66512 -24.11502 -23.14583 -22.38127 -21.94841 -20.51205 -20.06521 -19.58507 -18.13590 -17.79138 -17.66162 -16.88667 -16.80887 -16.64247 -16.34658 -15.92718 -15.78923 -15.56962 -15.30086 -14.93330 -14.74747 -14.66726 -14.44568 -14.00472 -13.87523 -13.56119 -13.51520 -13.35895 -13.16536 -12.93543 -12.88765 -12.81751 -12.60039 -12.43893 -12.16202 -12.06869 -11.76467 -11.68363 -11.64013 -11.51976 -11.16259 -11.04884 -10.72850 -10.27549 -10.22995 -10.16971 -9.75597 -8.68467 -8.34985 -6.13815 1.23526 1.37875 1.41857 1.45712 1.56256 1.56809 1.61806 1.76757 2.26700 2.36812 2.99369 3.29864 3.31630 3.53577 3.70779 3.75731 3.95379 3.99738 4.00223 4.04540 4.09913 4.29540 4.35800 4.39215 4.46675 4.49139 4.52158 4.53861 4.60406 4.67876 4.69382 4.77817 4.92677 4.96384 4.99411 5.01384 5.07432 5.16929 5.26035 5.35153 5.36697 5.40193 5.41942 5.75731 5.94210 6.19904 6.45447 6.73744 7.06155 7.14446 7.21146 8.74682 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.001852 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.535480 B =15112.352141 C =16146.110972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.145 4.145 3 C -0.046 4.046 4 H 0.058 0.942 5 C -0.119 4.119 6 C -0.147 4.147 7 C -0.115 4.115 8 C 0.527 3.473 9 O -0.583 6.583 10 N -0.652 5.652 11 C 0.106 3.894 12 C -0.138 4.138 13 C 0.117 3.883 14 H 0.119 0.881 15 C 0.123 3.877 16 N -0.704 5.704 17 C 0.532 3.468 18 O -0.571 6.571 19 C -0.125 4.125 20 S -0.159 6.159 21 C -0.544 4.544 22 H 0.086 0.914 23 C 0.011 3.989 24 N -0.913 5.913 25 Si 1.002 2.998 26 H -0.254 1.254 27 H -0.276 1.276 28 H -0.273 1.273 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.124 0.876 43 H 0.038 0.962 44 H 0.054 0.946 45 H 0.421 0.579 46 H 0.118 0.882 47 H 0.111 0.889 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.953 -26.243 -16.730 35.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.163 4.163 3 C -0.065 4.065 4 H 0.076 0.924 5 C -0.156 4.156 6 C -0.204 4.204 7 C -0.155 4.155 8 C 0.319 3.681 9 O -0.462 6.462 10 N -0.388 5.388 11 C -0.014 4.014 12 C -0.176 4.176 13 C 0.013 3.987 14 H 0.136 0.864 15 C -0.002 4.002 16 N -0.360 5.360 17 C 0.318 3.682 18 O -0.449 6.449 19 C -0.276 4.276 20 S 0.068 5.932 21 C -0.692 4.692 22 H 0.104 0.896 23 C -0.194 4.194 24 N -0.550 5.550 25 Si 0.823 3.177 26 H -0.178 1.178 27 H -0.201 1.201 28 H -0.199 1.199 29 H 0.105 0.895 30 H 0.132 0.868 31 H 0.145 0.855 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.121 0.879 40 H 0.133 0.867 41 H 0.108 0.892 42 H 0.143 0.857 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.259 0.741 46 H 0.136 0.864 47 H 0.129 0.871 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.262 -26.350 -14.066 34.499 hybrid contribution 0.419 1.767 -1.176 2.163 sum -16.843 -24.583 -15.242 33.471 Atomic orbital electron populations 1.24009 0.96012 1.02287 1.00474 1.22868 0.95895 0.97391 1.00105 1.20110 0.96607 0.96204 0.93550 0.92375 1.21561 0.98104 1.01459 0.94515 1.21719 0.99815 1.01533 0.97372 1.21639 1.00552 0.92686 1.00587 1.21059 0.76972 0.90963 0.79099 1.90739 1.62481 1.50135 1.42895 1.50017 1.39647 1.20121 1.29002 1.23251 0.90871 0.99272 0.88055 1.23617 0.95871 0.95182 1.02930 1.23140 0.90008 0.91641 0.93950 0.86373 1.21354 0.94301 0.86949 0.97560 1.45480 1.50011 1.28802 1.11675 1.20206 0.78826 0.83685 0.85516 1.90710 1.63668 1.70688 1.19815 1.23343 1.02606 0.97957 1.03723 1.85699 1.61516 1.33890 1.12085 1.23246 1.34976 1.13913 0.97029 0.89601 1.26179 0.96682 1.01002 0.95493 1.70208 1.39118 1.38345 1.07288 0.84862 0.77539 0.76492 0.78766 1.17774 1.20100 1.19882 0.89467 0.86791 0.85470 0.93871 0.90954 0.94264 0.93002 0.91335 0.86651 0.86538 0.87904 0.86744 0.89233 0.85748 0.94356 0.92772 0.74140 0.86406 0.87052 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 14.32 67.78 0.97 -1.13 16 2 C -0.14 -1.64 7.67 25.64 0.20 -1.44 16 3 C -0.05 -0.75 1.79 -11.54 -0.02 -0.77 16 4 H 0.06 1.25 7.47 -2.39 -0.02 1.24 16 5 C -0.12 -2.38 5.20 30.59 0.16 -2.22 16 6 C -0.15 -2.85 9.80 71.98 0.71 -2.15 16 7 C -0.12 -1.48 4.98 29.85 0.15 -1.33 16 8 C 0.53 11.23 7.51 87.66 0.66 11.89 16 9 O -0.58 -18.84 13.89 -3.04 -0.04 -18.89 16 10 N -0.65 -10.15 3.56 -833.21 -2.97 -13.12 16 11 C 0.11 0.52 8.41 83.17 0.70 1.22 16 12 C -0.14 -1.01 8.03 31.02 0.25 -0.76 16 13 C 0.12 1.78 4.07 41.88 0.17 1.95 16 14 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 15 C 0.12 3.30 5.48 86.38 0.47 3.78 16 16 N -0.70 -18.61 5.55 -463.05 -2.57 -21.18 16 17 C 0.53 20.72 7.85 87.66 0.69 21.40 16 18 O -0.57 -28.74 15.86 -3.05 -0.05 -28.79 16 19 C -0.13 -5.01 6.16 71.24 0.44 -4.58 16 20 S -0.16 -9.05 20.57 -56.49 -1.16 -10.21 16 21 C -0.54 -31.31 9.50 67.95 0.65 -30.66 16 22 H 0.09 4.54 7.80 -2.91 -0.02 4.52 16 23 C 0.01 0.63 5.49 84.86 0.47 1.09 16 24 N -0.91 -56.97 13.22 21.65 0.29 -56.68 16 25 Si 1.00 43.86 29.55 68.60 2.03 45.88 16 26 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 27 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 H 0.09 1.11 7.83 -2.91 -0.02 1.08 16 30 H 0.11 0.87 8.06 -2.91 -0.02 0.84 16 31 H 0.13 0.99 8.06 -2.91 -0.02 0.96 16 32 H 0.04 1.19 6.20 -2.39 -0.01 1.17 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.09 7.23 -2.38 -0.02 1.08 16 37 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 0.13 8.14 -2.38 -0.02 0.11 16 40 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.09 0.91 7.96 -2.39 -0.02 0.89 16 42 H 0.12 0.24 8.14 -2.38 -0.02 0.22 16 43 H 0.04 1.37 7.12 -2.39 -0.02 1.36 16 44 H 0.05 1.64 7.89 -2.39 -0.02 1.62 16 45 H 0.42 7.16 8.48 -92.71 -0.79 6.37 16 46 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 47 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 48 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -89.96 411.76 2.32 -87.64 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.15 Total: 19.06 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 6.65 Total: -3.71 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -5.25 Total: -90.98 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -0.09 Total: -47.68 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.16 Total: -10.21 kcal Total: -89.96 2.32 -87.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738639789.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.509 kcal (2) G-P(sol) polarization free energy of solvation -89.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds