Wall clock time and date at job start Sat Apr 11 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.46911 * 2 1 4 4 H 1.09006 * 109.47149 * 304.99719 * 3 2 1 5 5 C 1.52998 * 109.47546 * 64.99793 * 3 2 1 6 6 C 1.50707 * 109.47085 * 185.00159 * 3 2 1 7 7 O 1.21278 * 119.99842 * 331.41759 * 6 3 2 8 8 N 1.34773 * 120.00082 * 151.41689 * 6 3 2 9 9 C 1.46505 * 125.28398 * 5.18351 * 8 6 3 10 10 C 1.53904 * 108.26534 * 182.22733 * 9 8 6 11 11 H 1.08993 * 112.62215 * 250.43065 * 10 9 8 12 12 C 1.54262 * 108.19731 * 124.64471 * 10 9 8 13 13 C 1.53799 * 105.68323 * 248.22925 * 12 10 9 14 14 N 1.47290 * 106.09142 * 19.42671 * 13 12 10 15 15 C 1.34777 * 126.71259 * 148.13393 * 14 13 12 16 16 O 1.21277 * 119.99861 * 174.36717 * 15 14 13 17 17 C 1.50698 * 119.99914 * 354.37067 * 15 14 13 18 18 S 1.81001 * 109.47076 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99728 * 179.97438 * 18 17 15 20 20 H 1.07992 * 120.00616 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99722 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00091 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99810 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47361 * 89.99893 * 23 21 19 25 25 H 1.48504 * 109.47222 * 209.99599 * 23 21 19 26 26 H 1.48503 * 109.47413 * 329.99662 * 23 21 19 27 27 C 1.46713 * 106.57683 * 328.11817 * 14 13 12 28 28 H 1.09004 * 111.37488 * 269.90575 * 27 14 13 29 29 C 1.46664 * 125.28186 * 184.87822 * 8 6 3 30 30 H 1.08994 * 109.46883 * 60.00282 * 1 2 3 31 31 H 1.09001 * 109.47175 * 300.00031 * 1 2 3 32 32 H 1.09004 * 109.46915 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46658 * 120.00005 * 2 1 3 34 34 H 1.09000 * 109.47094 * 239.99418 * 2 1 3 35 35 H 1.09002 * 109.47208 * 180.84332 * 5 3 2 36 36 H 1.08999 * 109.47179 * 300.84830 * 5 3 2 37 37 H 1.09002 * 109.46926 * 60.84515 * 5 3 2 38 38 H 1.08995 * 109.71773 * 301.94804 * 9 8 6 39 39 H 1.08998 * 109.71780 * 62.51451 * 9 8 6 40 40 H 1.09003 * 110.20867 * 8.28732 * 12 10 9 41 41 H 1.08998 * 110.20572 * 130.17743 * 12 10 9 42 42 H 1.08998 * 110.71136 * 260.00369 * 13 12 10 43 43 H 1.09001 * 109.71456 * 138.31495 * 13 12 10 44 44 H 1.09003 * 109.47240 * 299.99773 * 17 15 14 45 45 H 1.09000 * 109.47343 * 59.99267 * 17 15 14 46 46 H 0.96991 * 120.00377 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.92213 * 282.27953 * 29 8 6 48 48 H 1.08996 * 109.91865 * 43.58482 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5420 1.4443 -0.1239 7 8 4.1865 0.5085 0.3001 8 7 4.1689 2.4858 -0.7058 9 6 3.5196 3.7185 -1.1590 10 6 4.5873 4.6141 -1.8120 11 1 4.8204 5.4939 -1.2123 12 6 4.1173 4.9614 -3.2396 13 6 5.0880 4.2342 -4.1853 14 7 5.7230 3.1748 -3.3829 15 6 6.1435 1.9726 -3.8239 16 8 6.7444 1.2292 -3.0775 17 6 5.8672 1.5523 -5.2444 18 16 6.5527 -0.0984 -5.5294 19 6 6.0980 -0.3315 -7.2157 20 1 5.5568 0.4414 -7.7409 21 6 6.4354 -1.5088 -7.8691 22 7 7.0955 -2.4508 -7.2291 23 14 5.9541 -1.7557 -9.6570 24 1 7.0383 -1.2488 -10.5361 25 1 5.7414 -3.2022 -9.9172 26 1 4.6998 -1.0124 -9.9392 27 6 5.8086 3.6842 -2.0097 28 1 6.7458 4.2144 -1.8403 29 6 5.6080 2.5638 -0.9778 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.9856 3.1587 1.3009 36 1 0.5497 2.1119 1.4041 37 1 2.0822 1.5964 2.1483 38 1 2.7445 3.4796 -1.8871 39 1 3.0768 4.2353 -0.3076 40 1 3.0932 4.6207 -3.3922 41 1 4.1862 6.0361 -3.4077 42 1 5.8446 4.9214 -4.5640 43 1 4.5335 3.7944 -5.0144 44 1 4.7907 1.5335 -5.4149 45 1 6.3312 2.2614 -5.9300 46 1 7.3317 -3.2733 -7.6858 47 1 6.1472 2.7992 -0.0603 48 1 5.9605 1.6168 -1.3864 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739363365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:45 Heat of formation + Delta-G solvation = -96.605850 kcal Electronic energy + Delta-G solvation = -28362.772424 eV Core-core repulsion = 24542.540798 eV Total energy + Delta-G solvation = -3820.231626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.13382 -40.65910 -39.12618 -36.52965 -36.39769 -34.62213 -33.14647 -32.07840 -30.78186 -29.98140 -28.48027 -27.68008 -26.44982 -24.76077 -24.25175 -22.22236 -21.44532 -20.56083 -20.00735 -19.55671 -18.40268 -17.95748 -17.44637 -16.94002 -16.88180 -16.61601 -16.41968 -15.87570 -15.82587 -15.65989 -14.85398 -14.70515 -14.59013 -14.45999 -14.39829 -13.86715 -13.81300 -13.54337 -13.40361 -13.24482 -13.12337 -13.02322 -12.94569 -12.90641 -12.64298 -12.63763 -12.52813 -12.18956 -11.98574 -11.76579 -11.75297 -11.70075 -11.58910 -11.17245 -10.86788 -10.75191 -10.31406 -9.76129 -9.63567 -8.72763 -8.37508 -6.17403 1.20068 1.40688 1.42023 1.49117 1.53658 1.55353 1.95199 2.05162 2.24293 2.96570 3.03519 3.27418 3.37853 3.59461 3.62549 3.77088 3.88370 3.93490 4.09211 4.17204 4.18198 4.29083 4.32626 4.34344 4.41269 4.44193 4.51272 4.53120 4.65197 4.70269 4.75955 4.77951 4.84217 4.90576 4.95855 5.03575 5.07279 5.14698 5.15778 5.25060 5.29120 5.33950 5.37583 5.44202 5.53322 6.16185 6.36523 6.47693 7.02914 7.08676 7.10923 8.71975 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.003241 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.468609 B = 8638.270092 C = 9906.202818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.095 4.095 4 H 0.113 0.887 5 C -0.134 4.134 6 C 0.515 3.485 7 O -0.597 6.597 8 N -0.612 5.612 9 C 0.095 3.905 10 C -0.089 4.089 11 H 0.152 0.848 12 C -0.114 4.114 13 C 0.087 3.913 14 N -0.612 5.612 15 C 0.547 3.453 16 O -0.560 6.560 17 C -0.117 4.117 18 S -0.158 6.158 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.913 5.913 23 Si 1.002 2.998 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.256 1.256 27 C 0.128 3.872 28 H 0.110 0.890 29 C 0.073 3.927 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.271 0.729 47 H 0.071 0.929 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.011 24.236 12.083 31.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.117 4.117 4 H 0.131 0.869 5 C -0.191 4.191 6 C 0.305 3.695 7 O -0.478 6.478 8 N -0.345 5.345 9 C -0.026 4.026 10 C -0.108 4.108 11 H 0.170 0.830 12 C -0.152 4.152 13 C -0.035 4.035 14 N -0.347 5.347 15 C 0.336 3.664 16 O -0.438 6.438 17 C -0.268 4.268 18 S 0.070 5.930 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.823 3.177 24 H -0.191 1.191 25 H -0.204 1.204 26 H -0.179 1.179 27 C 0.024 3.976 28 H 0.128 0.872 29 C -0.050 4.050 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.120 0.880 45 H 0.127 0.873 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.733 22.368 13.392 29.946 hybrid contribution 0.049 -0.484 -1.767 1.833 sum -14.685 21.884 11.625 28.804 Atomic orbital electron populations 1.21779 0.92373 1.02549 1.03283 1.21398 0.98014 0.94515 1.01184 1.21359 0.88072 0.99274 1.02946 0.86921 1.21765 1.03668 1.00368 0.93290 1.21336 0.91781 0.80181 0.76173 1.90693 1.69417 1.37159 1.50519 1.48334 1.08390 1.18257 1.59535 1.22575 0.96013 0.83372 1.00675 1.23027 0.91311 0.97984 0.98473 0.83044 1.22611 0.98990 1.02939 0.90655 1.22567 0.96753 0.88748 0.95397 1.48300 1.60995 1.14630 1.10778 1.19758 0.77865 0.80263 0.88530 1.90646 1.41781 1.53699 1.57711 1.23284 1.05191 1.02034 0.96305 1.85726 1.75259 1.15805 1.16248 1.23178 1.43072 1.06484 0.96535 0.89774 1.26197 0.94267 0.94261 1.04564 1.70199 1.38082 1.07422 1.39229 0.84909 0.79236 0.77735 0.75818 1.19080 1.20359 1.17930 1.22399 1.01375 0.93294 0.80528 0.87217 1.22265 0.82763 1.01610 0.98401 0.91508 0.90325 0.92506 0.92801 0.94716 0.90505 0.88412 0.93691 0.90113 0.87895 0.89083 0.86118 0.88974 0.90327 0.88043 0.87321 0.91982 0.91050 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.67 71.99 0.70 -1.48 16 2 C -0.11 -2.66 4.89 30.60 0.15 -2.51 16 3 C -0.10 -1.93 2.23 -11.54 -0.03 -1.96 16 4 H 0.11 1.70 7.05 -2.38 -0.02 1.69 16 5 C -0.13 -1.80 8.95 71.98 0.64 -1.16 16 6 C 0.51 15.86 6.90 87.66 0.60 16.46 16 7 O -0.60 -25.71 16.56 -3.02 -0.05 -25.76 16 8 N -0.61 -15.61 3.31 -818.40 -2.71 -18.31 16 9 C 0.09 1.19 5.89 86.68 0.51 1.71 16 10 C -0.09 -0.83 4.13 -9.46 -0.04 -0.86 16 11 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 12 C -0.11 -0.75 6.53 31.29 0.20 -0.55 16 13 C 0.09 1.30 6.84 86.50 0.59 1.90 16 14 N -0.61 -16.13 3.24 -789.29 -2.56 -18.69 16 15 C 0.55 21.75 7.62 87.66 0.67 22.42 16 16 O -0.56 -28.10 13.58 -3.02 -0.04 -28.14 16 17 C -0.12 -4.90 5.05 71.24 0.36 -4.54 16 18 S -0.16 -9.17 20.57 -56.49 -1.16 -10.34 16 19 C -0.54 -31.87 9.50 67.96 0.65 -31.23 16 20 H 0.08 4.53 7.80 -2.91 -0.02 4.51 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -57.72 13.22 21.65 0.29 -57.44 16 23 Si 1.00 44.22 29.55 68.60 2.03 46.25 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 27 C 0.13 2.67 3.94 45.76 0.18 2.85 16 28 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 29 C 0.07 2.19 6.30 86.56 0.55 2.74 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.86 6.55 -2.39 -0.02 0.85 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 1.45 8.02 -2.39 -0.02 1.43 16 34 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 0.74 7.47 -2.39 -0.02 0.73 16 36 H 0.10 0.82 6.53 -2.39 -0.02 0.80 16 37 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.90 6.35 -2.39 -0.02 0.89 16 39 H 0.10 0.67 7.47 -2.39 -0.02 0.65 16 40 H 0.09 0.50 6.98 -2.39 -0.02 0.49 16 41 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 1.25 7.34 -2.39 -0.02 1.24 16 44 H 0.10 3.91 8.00 -2.39 -0.02 3.90 16 45 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 46 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 47 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.06 2.69 5.02 -2.39 -0.01 2.68 16 Total: -1.00 -94.16 389.60 2.95 -91.22 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.95 Total: 16.28 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 6.20 Total: 4.93 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -4.98 Total: -94.44 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -0.09 Total: -53.90 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.16 Total: -10.34 kcal Total: -94.16 2.95 -91.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739363365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.389 kcal (2) G-P(sol) polarization free energy of solvation -94.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds