Wall clock time and date at job start Sat Apr 11 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47167 * 2 1 4 4 H 1.08998 * 109.47050 * 304.99772 * 3 2 1 5 5 C 1.53000 * 109.47186 * 64.99777 * 3 2 1 6 6 C 1.50696 * 109.47122 * 184.99763 * 3 2 1 7 7 O 1.21278 * 119.99960 * 359.97438 * 6 3 2 8 8 N 1.34776 * 120.00040 * 180.02562 * 6 3 2 9 9 C 1.50242 * 130.83880 * 359.93525 * 8 6 3 10 10 H 1.08997 * 115.85944 * 0.41160 * 9 8 6 11 11 C 1.55840 * 101.05012 * 234.01506 * 9 8 6 12 12 C 1.54853 * 103.45030 * 327.06514 * 11 9 8 13 13 C 1.50239 * 130.83861 * 180.02562 * 8 6 3 14 14 H 1.09004 * 116.45687 * 359.95665 * 13 8 6 15 15 C 1.55845 * 101.05118 * 233.91942 * 13 8 6 16 16 H 1.08997 * 110.62542 * 208.57444 * 15 13 8 17 17 N 1.46497 * 110.62656 * 85.55199 * 15 13 8 18 18 C 1.34770 * 120.00166 * 154.99600 * 17 15 13 19 19 O 1.21276 * 120.00074 * 0.02562 * 18 17 15 20 20 C 1.50703 * 120.00118 * 179.97438 * 18 17 15 21 21 S 1.81003 * 109.47081 * 180.02562 * 20 18 17 22 22 C 1.76200 * 99.99962 * 180.02562 * 21 20 18 23 23 H 1.08006 * 120.00011 * 359.97438 * 22 21 20 24 24 C 1.38799 * 120.00138 * 180.02562 * 22 21 20 25 25 N 1.31631 * 119.99910 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99987 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47307 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47218 * 120.00213 * 26 24 22 29 29 H 1.48497 * 109.47316 * 239.99774 * 26 24 22 30 30 C 1.54853 * 103.44676 * 327.06335 * 15 13 8 31 31 H 1.08997 * 109.47214 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47279 * 300.00324 * 1 2 3 33 33 H 1.09003 * 109.46949 * 60.00063 * 1 2 3 34 34 H 1.08992 * 109.46909 * 239.99766 * 2 1 3 35 35 H 1.09000 * 109.46494 * 119.99691 * 2 1 3 36 36 H 1.08997 * 109.47315 * 179.97438 * 5 3 2 37 37 H 1.09002 * 109.47589 * 299.99934 * 5 3 2 38 38 H 1.09007 * 109.47172 * 59.99815 * 5 3 2 39 39 H 1.09002 * 110.62742 * 208.57132 * 11 9 8 40 40 H 1.09007 * 110.62711 * 85.55599 * 11 9 8 41 41 H 1.08997 * 110.62754 * 241.51082 * 12 11 9 42 42 H 1.08991 * 110.62474 * 118.48904 * 12 11 9 43 43 H 0.97003 * 120.00135 * 335.00397 * 17 15 13 44 44 H 1.08995 * 109.47523 * 300.01003 * 20 18 17 45 45 H 1.09001 * 109.46961 * 60.00657 * 20 18 17 46 46 H 0.96993 * 120.00091 * 180.02562 * 25 24 22 47 47 H 1.08994 * 110.62854 * 118.48493 * 30 15 13 48 48 H 1.08998 * 110.62373 * 241.35472 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5419 1.4443 -0.1238 7 8 4.1451 0.3951 -0.2036 8 7 4.2150 2.6117 -0.1447 9 6 3.7252 4.0298 -0.0636 10 1 2.6470 4.1554 0.0349 11 6 4.3738 4.6433 -1.3409 12 6 5.7095 3.8709 -1.4731 13 6 5.6859 2.8959 -0.2581 14 1 6.3431 2.0299 -0.3376 15 6 5.9127 3.7998 0.9910 16 1 6.7397 4.4892 0.8211 17 7 6.1568 2.9824 2.1820 18 6 6.8515 3.4921 3.2183 19 8 7.2742 4.6276 3.1651 20 6 7.1022 2.6515 4.4438 21 16 8.0537 3.6101 5.6487 22 6 8.1988 2.4204 6.9402 23 1 7.7572 1.4415 6.8249 24 6 8.8797 2.7414 8.1063 25 7 9.4175 3.9346 8.2472 26 14 9.0329 1.4803 9.4758 27 1 8.3462 0.2267 9.0734 28 1 10.4684 1.1989 9.7313 29 1 8.4054 2.0130 10.7118 30 6 4.5771 4.5721 1.1239 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.9990 3.1540 1.3075 37 1 0.5490 2.1253 1.3969 38 1 2.0699 1.5875 2.1492 39 1 4.5584 5.7088 -1.2039 40 1 3.7427 4.4709 -2.2128 41 1 6.5564 4.5533 -1.4016 42 1 5.7406 3.3155 -2.4104 43 1 5.8186 2.0743 2.2248 44 1 6.1494 2.3581 4.8843 45 1 7.6630 1.7597 4.1641 46 1 9.8937 4.1588 9.0619 47 1 4.0964 4.3470 2.0758 48 1 4.7422 5.6448 1.0225 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001740336417.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:01 Heat of formation + Delta-G solvation = -64.923889 kcal Electronic energy + Delta-G solvation = -27952.214020 eV Core-core repulsion = 24133.356227 eV Total energy + Delta-G solvation = -3818.857793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.40260 -39.26425 -38.46637 -35.69237 -34.10825 -32.42522 -31.95903 -30.43803 -30.19891 -29.50384 -27.94702 -25.73265 -25.46820 -23.58749 -22.47181 -21.24458 -20.25980 -20.06107 -19.22719 -17.88447 -17.56180 -16.55614 -16.43144 -15.88175 -15.73194 -15.12724 -14.88306 -14.80160 -14.64965 -14.07689 -13.95535 -13.80520 -13.47215 -13.16499 -13.06737 -12.93626 -12.69356 -12.58046 -12.55402 -12.37452 -12.00959 -11.85661 -11.78997 -11.62706 -11.48197 -11.19762 -11.11468 -11.06478 -11.01397 -10.99462 -10.80922 -10.66478 -9.89734 -9.79963 -9.40144 -9.20242 -9.07038 -8.82729 -8.23531 -6.49713 -6.21671 -3.91904 2.40808 2.52405 3.01579 3.06180 3.22054 3.28537 3.33500 3.68785 3.96748 4.14951 4.20835 4.29432 4.33306 4.45848 4.59937 4.63961 4.79071 4.83229 4.91781 4.97164 5.01818 5.07333 5.11400 5.13746 5.17134 5.18268 5.25298 5.31980 5.46756 5.52939 5.55092 5.59567 5.64631 5.66580 5.74128 5.77550 5.83649 5.86800 5.89701 5.94957 5.99006 6.05653 6.15872 6.63480 7.35619 7.60607 7.69508 7.93903 8.36078 8.59398 9.24086 10.85851 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.002654 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.930643 B =10546.472971 C =11927.590534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.104 4.104 4 H 0.093 0.907 5 C -0.152 4.152 6 C 0.542 3.458 7 O -0.541 6.541 8 N -0.628 5.628 9 C 0.119 3.881 10 H 0.122 0.878 11 C -0.132 4.132 12 C -0.129 4.129 13 C 0.121 3.879 14 H 0.123 0.877 15 C 0.136 3.864 16 H 0.107 0.893 17 N -0.730 5.730 18 C 0.535 3.465 19 O -0.517 6.517 20 C -0.154 4.154 21 S -0.060 6.060 22 C -0.534 4.534 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.868 5.868 26 Si 0.919 3.081 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 C -0.144 4.144 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.399 0.601 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.079 0.921 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.816 -1.249 -22.045 28.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.126 4.126 4 H 0.111 0.889 5 C -0.209 4.209 6 C 0.332 3.668 7 O -0.418 6.418 8 N -0.363 5.363 9 C 0.016 3.984 10 H 0.139 0.861 11 C -0.170 4.170 12 C -0.168 4.168 13 C 0.018 3.982 14 H 0.140 0.860 15 C 0.029 3.971 16 H 0.124 0.876 17 N -0.383 5.383 18 C 0.321 3.679 19 O -0.391 6.391 20 C -0.304 4.304 21 S 0.167 5.833 22 C -0.682 4.682 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.206 1.206 30 C -0.184 4.184 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.233 0.767 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.760 0.048 -22.044 27.692 hybrid contribution -0.564 -2.495 0.988 2.742 sum -17.325 -2.447 -21.057 27.377 Atomic orbital electron populations 1.21842 0.95420 1.01967 1.01834 1.21350 0.95379 0.94083 1.03546 1.21296 0.91380 0.99381 1.00506 0.88864 1.21979 1.02326 1.00726 0.95884 1.20329 0.89600 0.81685 0.75230 1.90720 1.70325 1.30480 1.50295 1.50582 1.07919 1.05484 1.72353 1.23872 0.99088 0.79770 0.95712 0.86075 1.22969 0.96578 1.00080 0.97399 1.22872 0.98220 0.97941 0.97751 1.23893 0.82481 0.97339 0.94520 0.85951 1.22312 0.97784 0.92757 0.84199 0.87560 1.46015 1.57940 1.17575 1.16806 1.20317 0.76550 0.87521 0.83516 1.90690 1.49442 1.18554 1.80462 1.23537 1.05479 1.03375 0.98052 1.85346 1.67705 1.19352 1.10894 1.22913 1.41167 1.01242 1.02923 0.90901 1.24993 0.94667 0.96013 0.97937 1.70025 1.33685 1.19423 1.27207 0.86114 0.78048 0.80580 0.80752 1.19604 1.20550 1.20572 1.23488 0.95711 1.00646 0.98508 0.92416 0.92337 0.92813 0.91236 0.91185 0.91703 0.91170 0.91852 0.89831 0.91104 0.89713 0.90738 0.76724 0.89347 0.89240 0.92250 0.90268 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.67 37.16 0.36 -0.58 16 2 C -0.11 -0.87 4.75 -26.73 -0.13 -1.00 16 3 C -0.10 -0.81 2.35 -91.78 -0.22 -1.03 16 4 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 5 C -0.15 -1.04 8.75 37.16 0.32 -0.72 16 6 C 0.54 5.86 7.34 -10.99 -0.08 5.78 16 7 O -0.54 -7.97 16.52 5.56 0.09 -7.88 16 8 N -0.63 -5.70 2.88 -146.25 -0.42 -6.12 16 9 C 0.12 0.80 4.09 -62.78 -0.26 0.54 16 10 H 0.12 0.60 6.19 -51.93 -0.32 0.28 16 11 C -0.13 -0.75 6.44 -24.24 -0.16 -0.91 16 12 C -0.13 -0.90 6.44 -24.26 -0.16 -1.05 16 13 C 0.12 1.14 4.87 -62.82 -0.31 0.83 16 14 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 15 C 0.14 1.50 2.80 -65.44 -0.18 1.32 16 16 H 0.11 1.30 7.23 -51.93 -0.38 0.92 16 17 N -0.73 -10.00 5.07 -51.40 -0.26 -10.26 16 18 C 0.53 9.89 7.85 -10.99 -0.09 9.80 16 19 O -0.52 -11.35 15.51 5.56 0.09 -11.26 16 20 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 21 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 22 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 23 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 24 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 26 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 C -0.14 -1.31 6.23 -24.21 -0.15 -1.46 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.65 7.95 -51.93 -0.41 0.23 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.41 5.15 -51.93 -0.27 0.14 16 37 H 0.07 0.39 6.57 -51.93 -0.34 0.05 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.40 7.82 -51.93 -0.41 0.00 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.54 7.81 -51.93 -0.41 0.13 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.40 5.08 8.66 -40.82 -0.35 4.73 16 44 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 45 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.08 0.84 7.98 -51.93 -0.41 0.42 16 48 H 0.09 0.75 7.82 -51.93 -0.41 0.34 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -35.50 394.65 -9.49 -44.99 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.82 Total: 1.83 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.61 Total: -4.47 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.05 Total: -41.91 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.18 Total: -19.14 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.50 -9.49 -44.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740336417.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.937 kcal (2) G-P(sol) polarization free energy of solvation -35.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds