Wall clock time and date at job start Sat Apr 11 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00172 * 2 1 4 4 H 1.09001 * 109.46692 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47291 * 240.00400 * 3 2 1 6 6 C 1.52994 * 109.47164 * 64.99757 * 5 3 2 7 7 C 1.52995 * 109.46719 * 120.00120 * 3 2 1 8 8 C 1.50709 * 109.46799 * 185.00199 * 7 3 2 9 9 O 1.21271 * 119.99774 * 359.97438 * 8 7 3 10 10 N 1.34776 * 119.99773 * 180.02562 * 8 7 3 11 11 C 1.46500 * 119.99541 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46740 * 179.97438 * 11 10 8 13 13 C 1.53501 * 114.20620 * 184.99715 * 12 11 10 14 14 N 1.47065 * 87.98741 * 220.15007 * 13 12 11 15 15 C 1.34775 * 136.05752 * 207.08848 * 14 13 12 16 16 O 1.21276 * 119.99984 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00022 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47116 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00013 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 179.72368 * 19 18 17 22 22 N 1.31626 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47145 * 60.00107 * 23 21 19 25 25 H 1.48496 * 109.47291 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47229 * 300.00299 * 23 21 19 27 27 C 1.47067 * 87.88377 * 27.34414 * 14 13 12 28 28 H 1.08000 * 120.00149 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00038 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99744 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47034 * 184.99960 * 5 3 2 32 32 H 1.09004 * 109.47044 * 304.99768 * 5 3 2 33 33 H 1.09000 * 109.47640 * 299.99960 * 6 5 3 34 34 H 1.09004 * 109.47131 * 60.00065 * 6 5 3 35 35 H 1.09002 * 109.46965 * 180.02562 * 6 5 3 36 36 H 1.09000 * 109.47536 * 65.00427 * 7 3 2 37 37 H 1.09003 * 109.47742 * 304.99789 * 7 3 2 38 38 H 0.97004 * 120.00382 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.47448 * 60.00063 * 11 10 8 40 40 H 1.08992 * 109.47028 * 299.99605 * 11 10 8 41 41 H 1.09001 * 113.28594 * 318.06464 * 12 11 10 42 42 H 1.09001 * 113.46643 * 105.36708 * 13 12 11 43 43 H 1.09004 * 113.51834 * 334.94152 * 13 12 11 44 44 H 1.09001 * 109.47434 * 59.99478 * 17 15 14 45 45 H 1.08999 * 109.47072 * 299.99957 * 17 15 14 46 46 H 0.97004 * 120.00604 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.47005 * 87.43764 * 27 14 13 48 48 H 1.09003 * 113.46723 * 217.87945 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3862 -1.2493 6 6 2.0564 1.4308 -2.4953 7 6 2.9431 1.3860 1.2492 8 6 3.6020 2.7399 1.3127 9 8 3.3894 3.5591 0.4442 10 7 4.4284 3.0399 2.3343 11 6 5.0684 4.3562 2.3963 12 6 5.9482 4.4371 3.6455 13 6 6.5783 5.8165 3.8833 14 7 7.8118 5.1257 4.2884 15 6 8.8558 5.3977 5.0962 16 8 8.9004 6.4511 5.6956 17 6 9.9682 4.3934 5.2538 18 16 11.2130 5.0458 6.3943 19 6 12.3597 3.7080 6.3936 20 1 12.1656 2.8307 5.7946 21 6 13.5157 3.7844 7.1580 22 7 13.7551 4.8560 7.8839 23 14 14.7311 2.3659 7.1578 24 1 15.2285 2.1404 5.7769 25 1 15.8733 2.6926 8.0487 26 1 14.0574 1.1367 7.6481 27 6 7.4079 4.0104 3.4191 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.5540 2.2878 -1.2056 32 1 3.5906 0.5105 -1.2952 33 1 1.4455 0.5291 -2.5390 34 1 1.4089 2.3065 -2.4493 35 1 2.6831 1.4881 -3.3853 36 1 3.7085 0.6112 1.2056 37 1 2.3279 1.2394 2.1370 38 1 4.5988 2.3845 3.0289 39 1 4.3028 5.1308 2.4408 40 1 5.6832 4.5035 1.5084 41 1 5.4832 3.9999 4.5291 42 1 6.1077 6.3750 4.6925 43 1 6.6898 6.4064 2.9735 44 1 10.4279 4.2051 4.2836 45 1 9.5636 3.4624 5.6508 46 1 14.5628 4.9093 8.4185 47 1 7.7379 4.1233 2.3864 48 1 7.6442 3.0300 3.8329 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001746019480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:04 Heat of formation + Delta-G solvation = -31.551493 kcal Electronic energy + Delta-G solvation = -25790.108015 eV Core-core repulsion = 21972.697358 eV Total energy + Delta-G solvation = -3817.410658 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.70478 -40.02083 -37.79810 -37.11177 -34.95296 -32.45958 -32.17499 -31.52638 -30.56279 -28.89410 -26.33626 -26.06934 -25.44573 -24.38452 -22.21416 -21.38274 -20.57378 -20.02112 -19.10850 -17.76750 -17.36958 -16.77041 -16.63661 -16.06598 -15.55129 -15.48289 -15.14168 -15.07361 -14.83098 -14.63326 -14.22931 -13.93308 -13.78874 -13.62949 -13.18126 -13.11515 -12.96105 -12.81928 -12.53272 -12.30091 -12.22989 -11.97599 -11.66651 -11.58353 -11.52373 -11.12337 -11.07817 -11.06283 -10.98519 -10.89802 -10.79671 -10.07108 -9.86270 -9.76303 -9.49332 -9.39979 -9.08873 -8.67376 -8.28105 -6.54139 -6.24239 -3.95681 1.83543 2.29017 2.66964 2.79501 3.01304 3.21187 3.21878 3.26756 3.51977 3.90787 4.17362 4.22865 4.30648 4.43074 4.56388 4.57785 4.71885 4.77561 4.83407 4.93601 4.94974 5.02203 5.10770 5.10867 5.21550 5.24289 5.31807 5.31937 5.40601 5.43448 5.45790 5.54909 5.55611 5.60328 5.76414 5.79508 5.87077 5.96167 5.96710 6.00152 6.07809 6.09518 6.22389 6.36482 7.08885 7.56233 7.79231 7.86110 8.32003 8.48542 9.20674 10.83127 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.001624 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.829005 B =17233.613525 C =18252.825547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.147 4.147 3 C -0.046 4.046 4 H 0.082 0.918 5 C -0.122 4.122 6 C -0.148 4.148 7 C -0.136 4.136 8 C 0.512 3.488 9 O -0.536 6.536 10 N -0.731 5.731 11 C 0.132 3.868 12 C -0.141 4.141 13 C 0.116 3.884 14 N -0.654 5.654 15 C 0.562 3.438 16 O -0.513 6.513 17 C -0.144 4.144 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 C 0.106 3.894 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.403 0.597 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.086 0.914 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.150 -10.369 -16.486 32.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.165 4.165 3 C -0.065 4.065 4 H 0.100 0.900 5 C -0.160 4.160 6 C -0.206 4.206 7 C -0.175 4.175 8 C 0.299 3.701 9 O -0.412 6.412 10 N -0.383 5.383 11 C 0.008 3.992 12 C -0.161 4.161 13 C -0.008 4.008 14 N -0.393 5.393 15 C 0.352 3.648 16 O -0.386 6.386 17 C -0.295 4.295 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.018 4.018 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.237 0.763 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.130 0.870 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.104 0.896 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.878 -8.033 -15.922 31.428 hybrid contribution 0.891 -2.544 -0.332 2.716 sum -24.986 -10.578 -16.253 31.629 Atomic orbital electron populations 1.23878 0.95967 1.01858 1.01104 1.22928 0.95927 0.97999 0.99615 1.20162 0.96881 0.95763 0.93658 0.89989 1.21661 0.98056 1.02850 0.93387 1.21728 0.99795 1.01576 0.97455 1.21716 1.00349 0.94929 1.00554 1.20705 0.78633 0.89648 0.81092 1.90695 1.61949 1.50464 1.38126 1.46053 1.48009 1.17106 1.27181 1.21248 0.95925 0.84966 0.97086 1.23336 0.94808 0.99069 0.98872 1.22792 0.83106 0.94512 1.00427 1.49608 1.22300 1.21944 1.45427 1.19950 0.80088 0.87515 0.77240 1.90721 1.76313 1.25791 1.45791 1.23468 0.98952 1.00899 1.06154 1.85417 1.17120 1.26190 1.54569 1.22812 1.08006 1.04432 1.33266 0.90968 1.24989 0.97270 0.96712 0.94535 1.70004 1.26343 1.27148 1.26721 0.86218 0.79737 0.81271 0.78237 1.19927 1.20761 1.19926 1.23119 0.91020 0.92313 0.95316 0.88594 0.88512 0.87357 0.89808 0.92543 0.92965 0.92818 0.93005 0.88603 0.88706 0.76313 0.90667 0.90706 0.87010 0.90072 0.89726 0.89324 0.89319 0.92076 0.89633 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.97 14.32 29.01 0.42 -0.55 16 2 C -0.15 -0.76 7.75 -36.03 -0.28 -1.04 16 3 C -0.05 -0.28 1.80 -91.77 -0.17 -0.45 16 4 H 0.08 0.63 7.60 -51.93 -0.39 0.23 16 5 C -0.12 -0.86 5.18 -26.73 -0.14 -1.00 16 6 C -0.15 -1.01 9.73 37.15 0.36 -0.64 16 7 C -0.14 -0.66 5.16 -27.88 -0.14 -0.81 16 8 C 0.51 3.78 7.51 -10.98 -0.08 3.69 16 9 O -0.54 -5.96 13.99 5.57 0.08 -5.88 16 10 N -0.73 -4.04 5.56 -60.29 -0.33 -4.37 16 11 C 0.13 0.84 5.59 -4.04 -0.02 0.81 16 12 C -0.14 -0.96 4.11 -89.96 -0.37 -1.33 16 13 C 0.12 1.15 8.19 -8.51 -0.07 1.08 16 14 N -0.65 -8.97 3.69 -185.05 -0.68 -9.65 16 15 C 0.56 10.85 8.10 -10.99 -0.09 10.77 16 16 O -0.51 -12.04 16.64 5.56 0.09 -11.95 16 17 C -0.14 -2.95 5.98 36.00 0.22 -2.74 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 23 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.11 0.94 8.00 -8.37 -0.07 0.87 16 28 H 0.10 0.49 7.83 -52.49 -0.41 0.08 16 29 H 0.10 0.40 8.06 -52.48 -0.42 -0.02 16 30 H 0.11 0.47 8.06 -52.49 -0.42 0.05 16 31 H 0.08 0.77 5.88 -51.93 -0.31 0.46 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.33 7.38 -51.93 -0.38 -0.06 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.40 1.28 8.47 -40.82 -0.35 0.93 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.53 7.81 -51.93 -0.41 0.12 16 41 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 44 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.09 0.67 7.88 -51.93 -0.41 0.26 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 413.70 15.07 6.23 6.23 Total: -1.00 -36.63 413.70 -9.47 -46.10 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -8.12 Total: -3.26 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.24 Total: -4.27 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: -0.28 Total: -39.34 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.17 Total: -17.83 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.63 -9.47 -46.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746019480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.547 kcal (2) G-P(sol) polarization free energy of solvation -36.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds