Wall clock time and date at job start Sat Apr 11 2020 06:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00172 * 2 1 4 4 H 1.09001 * 109.46692 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47291 * 240.00400 * 3 2 1 6 6 C 1.52994 * 109.47164 * 64.99757 * 5 3 2 7 7 C 1.52995 * 109.46719 * 120.00120 * 3 2 1 8 8 C 1.50709 * 109.46799 * 185.00199 * 7 3 2 9 9 O 1.21271 * 119.99774 * 359.97438 * 8 7 3 10 10 N 1.34776 * 119.99773 * 180.02562 * 8 7 3 11 11 C 1.46500 * 119.99541 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46740 * 179.97438 * 11 10 8 13 13 C 1.53501 * 114.20620 * 184.99715 * 12 11 10 14 14 N 1.47065 * 87.98741 * 220.15007 * 13 12 11 15 15 C 1.34775 * 136.05752 * 207.08848 * 14 13 12 16 16 O 1.21276 * 119.99984 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00022 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47116 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00013 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 179.72368 * 19 18 17 22 22 N 1.31626 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47145 * 60.00107 * 23 21 19 25 25 H 1.48496 * 109.47291 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47229 * 300.00299 * 23 21 19 27 27 C 1.47067 * 87.88377 * 27.34414 * 14 13 12 28 28 H 1.08000 * 120.00149 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00038 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99744 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47034 * 184.99960 * 5 3 2 32 32 H 1.09004 * 109.47044 * 304.99768 * 5 3 2 33 33 H 1.09000 * 109.47640 * 299.99960 * 6 5 3 34 34 H 1.09004 * 109.47131 * 60.00065 * 6 5 3 35 35 H 1.09002 * 109.46965 * 180.02562 * 6 5 3 36 36 H 1.09000 * 109.47536 * 65.00427 * 7 3 2 37 37 H 1.09003 * 109.47742 * 304.99789 * 7 3 2 38 38 H 0.97004 * 120.00382 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.47448 * 60.00063 * 11 10 8 40 40 H 1.08992 * 109.47028 * 299.99605 * 11 10 8 41 41 H 1.09001 * 113.28594 * 318.06464 * 12 11 10 42 42 H 1.09001 * 113.46643 * 105.36708 * 13 12 11 43 43 H 1.09004 * 113.51834 * 334.94152 * 13 12 11 44 44 H 1.09001 * 109.47434 * 59.99478 * 17 15 14 45 45 H 1.08999 * 109.47072 * 299.99957 * 17 15 14 46 46 H 0.97004 * 120.00604 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.47005 * 87.43764 * 27 14 13 48 48 H 1.09003 * 113.46723 * 217.87945 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3862 -1.2493 6 6 2.0564 1.4308 -2.4953 7 6 2.9431 1.3860 1.2492 8 6 3.6020 2.7399 1.3127 9 8 3.3894 3.5591 0.4442 10 7 4.4284 3.0399 2.3343 11 6 5.0684 4.3562 2.3963 12 6 5.9482 4.4371 3.6455 13 6 6.5783 5.8165 3.8833 14 7 7.8118 5.1257 4.2884 15 6 8.8558 5.3977 5.0962 16 8 8.9004 6.4511 5.6956 17 6 9.9682 4.3934 5.2538 18 16 11.2130 5.0458 6.3943 19 6 12.3597 3.7080 6.3936 20 1 12.1656 2.8307 5.7946 21 6 13.5157 3.7844 7.1580 22 7 13.7551 4.8560 7.8839 23 14 14.7311 2.3659 7.1578 24 1 15.2285 2.1404 5.7769 25 1 15.8733 2.6926 8.0487 26 1 14.0574 1.1367 7.6481 27 6 7.4079 4.0104 3.4191 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.5540 2.2878 -1.2056 32 1 3.5906 0.5105 -1.2952 33 1 1.4455 0.5291 -2.5390 34 1 1.4089 2.3065 -2.4493 35 1 2.6831 1.4881 -3.3853 36 1 3.7085 0.6112 1.2056 37 1 2.3279 1.2394 2.1370 38 1 4.5988 2.3845 3.0289 39 1 4.3028 5.1308 2.4408 40 1 5.6832 4.5035 1.5084 41 1 5.4832 3.9999 4.5291 42 1 6.1077 6.3750 4.6925 43 1 6.6898 6.4064 2.9735 44 1 10.4279 4.2051 4.2836 45 1 9.5636 3.4624 5.6508 46 1 14.5628 4.9093 8.4185 47 1 7.7379 4.1233 2.3864 48 1 7.6442 3.0300 3.8329 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001746019480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:03 Heat of formation + Delta-G solvation = -56.327825 kcal Electronic energy + Delta-G solvation = -25791.182398 eV Core-core repulsion = 21972.697358 eV Total energy + Delta-G solvation = -3818.485040 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.58135 -40.74636 -39.08330 -37.64963 -35.61660 -34.60005 -32.61922 -32.48873 -31.42264 -29.99426 -27.73777 -27.10211 -26.80636 -24.98206 -22.72255 -22.11109 -21.23566 -20.45344 -20.33368 -19.53296 -18.11827 -17.85792 -17.37600 -16.95671 -16.87486 -16.55826 -16.49013 -15.85341 -15.76670 -15.59422 -15.39738 -14.79107 -14.63750 -14.62596 -14.21899 -14.04382 -13.77262 -13.61343 -13.46219 -13.43768 -13.20935 -12.98604 -12.87096 -12.74807 -12.63645 -12.38758 -12.04968 -11.98894 -11.76851 -11.66636 -11.59689 -11.51210 -11.13934 -10.96697 -10.64537 -10.31390 -10.16041 -9.97839 -9.79942 -8.70370 -8.35562 -6.15165 1.19322 1.42233 1.43805 1.45544 1.52109 1.54976 1.75469 1.96327 2.26242 2.28940 2.98547 3.17028 3.24258 3.61743 3.79201 3.81690 3.86517 4.05656 4.15092 4.16156 4.24162 4.30996 4.42120 4.44109 4.46210 4.46244 4.56788 4.59137 4.63389 4.68399 4.77465 4.81260 4.86265 4.91853 5.01200 5.09150 5.14401 5.21800 5.24723 5.39980 5.43166 5.48887 5.56982 5.82156 5.98445 6.18218 6.57928 6.65311 7.05174 7.07150 7.37059 8.73489 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.001624 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.829005 B =17233.613525 C =18252.825547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C -0.045 4.045 4 H 0.060 0.940 5 C -0.121 4.121 6 C -0.147 4.147 7 C -0.130 4.130 8 C 0.509 3.491 9 O -0.579 6.579 10 N -0.720 5.720 11 C 0.139 3.861 12 C -0.107 4.107 13 C 0.105 3.895 14 N -0.654 5.654 15 C 0.559 3.441 16 O -0.570 6.570 17 C -0.117 4.117 18 S -0.153 6.153 19 C -0.548 4.548 20 H 0.084 0.916 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.260 1.260 27 C 0.101 3.899 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.052 0.948 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.417 0.583 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.127 0.873 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.272 0.728 47 H 0.103 0.897 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.027 -13.710 -17.546 35.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.164 4.164 3 C -0.064 4.064 4 H 0.079 0.921 5 C -0.158 4.158 6 C -0.205 4.205 7 C -0.169 4.169 8 C 0.297 3.703 9 O -0.458 6.458 10 N -0.373 5.373 11 C 0.014 3.986 12 C -0.126 4.126 13 C -0.018 4.018 14 N -0.391 5.391 15 C 0.348 3.652 16 O -0.449 6.449 17 C -0.268 4.268 18 S 0.074 5.926 19 C -0.696 4.696 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.185 1.185 27 C -0.020 4.020 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.254 0.746 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.145 0.855 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.127 0.873 46 H 0.081 0.919 47 H 0.121 0.879 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -26.805 -11.427 -17.010 33.740 hybrid contribution 0.990 -1.480 -0.121 1.785 sum -25.815 -12.906 -17.130 33.562 Atomic orbital electron populations 1.23988 0.96151 1.02160 1.00939 1.22939 0.95897 0.97851 0.99731 1.20097 0.96641 0.95661 0.93967 0.92113 1.21617 0.98092 1.02144 0.93938 1.21718 0.99738 1.01405 0.97592 1.21733 1.00770 0.93869 1.00552 1.21157 0.78384 0.90134 0.80606 1.90689 1.63447 1.51902 1.39810 1.45939 1.47202 1.17009 1.27127 1.21092 0.95628 0.85453 0.96403 1.23082 0.93772 0.96183 0.99608 1.23138 0.81488 0.96459 1.00697 1.49575 1.21191 1.24243 1.44050 1.19652 0.81014 0.86435 0.78100 1.90692 1.77849 1.27723 1.48627 1.23252 0.97450 1.01485 1.04636 1.85618 1.20504 1.28608 1.57833 1.23160 1.08326 1.04511 1.33556 0.89813 1.26146 0.99409 0.99752 0.93768 1.70178 1.27140 1.29674 1.27749 0.84990 0.76733 0.77419 0.78769 1.18652 1.20397 1.18471 1.23514 0.91676 0.91565 0.95289 0.89196 0.87417 0.85971 0.92072 0.91432 0.92236 0.93893 0.92936 0.86406 0.86849 0.74575 0.91038 0.91055 0.85524 0.90750 0.88276 0.87751 0.87340 0.91944 0.87943 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.67 14.32 67.78 0.97 -0.70 16 2 C -0.15 -1.21 7.75 25.65 0.20 -1.01 16 3 C -0.04 -0.49 1.80 -11.54 -0.02 -0.51 16 4 H 0.06 0.92 7.60 -2.39 -0.02 0.91 16 5 C -0.12 -1.59 5.18 30.59 0.16 -1.43 16 6 C -0.15 -1.93 9.73 71.98 0.70 -1.23 16 7 C -0.13 -0.93 5.16 29.85 0.15 -0.77 16 8 C 0.51 6.50 7.51 87.66 0.66 7.16 16 9 O -0.58 -12.53 13.99 -3.00 -0.04 -12.57 16 10 N -0.72 -5.78 5.56 -463.06 -2.57 -8.35 16 11 C 0.14 1.39 5.59 86.38 0.48 1.87 16 12 C -0.11 -1.12 4.11 -10.37 -0.04 -1.16 16 13 C 0.10 1.91 8.19 83.18 0.68 2.59 16 14 N -0.65 -16.83 3.69 -857.77 -3.16 -19.99 16 15 C 0.56 21.49 8.10 87.66 0.71 22.20 16 16 O -0.57 -27.70 16.64 -3.02 -0.05 -27.75 16 17 C -0.12 -4.73 5.98 71.24 0.43 -4.30 16 18 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 19 C -0.55 -31.21 9.50 67.95 0.65 -30.56 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.80 5.49 84.86 0.47 1.27 16 22 N -0.91 -55.93 13.22 21.65 0.29 -55.64 16 23 Si 1.00 43.09 29.55 68.60 2.03 45.12 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 27 C 0.10 1.44 8.00 83.26 0.67 2.11 16 28 H 0.09 0.86 7.83 -2.91 -0.02 0.83 16 29 H 0.11 0.67 8.06 -2.91 -0.02 0.65 16 30 H 0.12 0.69 8.06 -2.91 -0.02 0.67 16 31 H 0.06 1.11 5.88 -2.39 -0.01 1.10 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.68 7.38 -2.39 -0.02 0.66 16 34 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.42 0.98 8.47 -92.71 -0.79 0.20 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.83 7.81 -2.39 -0.02 0.81 16 41 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.10 1.56 8.11 -2.39 -0.02 1.54 16 44 H 0.10 3.85 8.14 -2.40 -0.02 3.83 16 45 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 46 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 47 H 0.10 1.22 7.88 -2.39 -0.02 1.20 16 48 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -84.09 413.70 2.33 -81.76 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.15 Total: 11.65 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 6.85 Total: -4.48 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -5.45 Total: -83.99 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -0.09 Total: -40.32 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -84.09 2.33 -81.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746019480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.433 kcal (2) G-P(sol) polarization free energy of solvation -84.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds