Wall clock time and date at job start Sat Apr 11 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46943 * 2 1 4 4 H 1.09007 * 109.46615 * 304.99762 * 3 2 1 5 5 C 1.52990 * 109.47084 * 185.00008 * 3 2 1 6 6 N 1.46501 * 109.47385 * 185.00075 * 5 3 2 7 7 C 1.34779 * 120.00479 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99532 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00009 * 179.97438 * 7 6 5 10 10 H 1.08999 * 109.63976 * 60.00185 * 9 7 6 11 11 C 1.53017 * 109.64150 * 299.57441 * 9 7 6 12 12 C 1.50068 * 110.14950 * 190.88073 * 11 9 7 13 13 C 1.29447 * 124.06986 * 17.12996 * 12 11 9 14 14 C 1.50060 * 124.07906 * 359.56147 * 13 12 11 15 15 C 1.52951 * 110.30559 * 16.93790 * 14 13 12 16 16 N 1.46499 * 109.47277 * 64.99678 * 3 2 1 17 17 C 1.34784 * 119.99971 * 275.00026 * 16 3 2 18 18 O 1.21274 * 119.99897 * 359.72827 * 17 16 3 19 19 C 1.50695 * 119.99635 * 179.97438 * 17 16 3 20 20 S 1.81006 * 109.46975 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00155 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99670 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00050 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99873 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99940 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47281 * 90.00021 * 25 23 21 27 27 H 1.48502 * 109.47350 * 210.00185 * 25 23 21 28 28 H 1.48503 * 109.47108 * 330.00144 * 25 23 21 29 29 H 1.08998 * 109.46840 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47264 * 300.00242 * 1 2 3 31 31 H 1.08997 * 109.46807 * 60.00628 * 1 2 3 32 32 H 1.09000 * 109.47264 * 239.99758 * 2 1 3 33 33 H 1.08997 * 109.46807 * 119.99372 * 2 1 3 34 34 H 1.08999 * 109.47135 * 304.99852 * 5 3 2 35 35 H 1.09000 * 109.47629 * 64.99939 * 5 3 2 36 36 H 0.97000 * 119.99953 * 359.97438 * 6 5 3 37 37 H 1.08997 * 109.36153 * 311.08723 * 11 9 7 38 38 H 1.09001 * 109.35964 * 70.81117 * 11 9 7 39 39 H 1.08000 * 117.96770 * 197.10912 * 12 11 9 40 40 H 1.08004 * 117.95840 * 179.52734 * 13 12 11 41 41 H 1.08997 * 109.36555 * 137.31404 * 14 13 12 42 42 H 1.09004 * 109.35641 * 257.03208 * 14 13 12 43 43 H 1.08990 * 109.80332 * 191.12338 * 15 14 13 44 44 H 1.08998 * 109.43527 * 70.51550 * 15 14 13 45 45 H 0.96999 * 119.99984 * 94.99874 * 16 3 2 46 46 H 1.09005 * 109.47403 * 300.00056 * 19 17 16 47 47 H 1.09002 * 109.47422 * 60.00295 * 19 17 16 48 48 H 0.97005 * 119.99693 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1257 6 7 4.0630 2.8169 -0.0059 7 6 5.3856 3.0632 -0.0868 8 8 6.1634 2.1485 -0.2583 9 6 5.8980 4.4751 0.0358 10 1 5.6147 4.8847 1.0054 11 6 5.3036 5.3367 -1.0803 12 6 6.0000 6.6650 -1.1344 13 6 7.1453 6.9064 -0.5816 14 6 7.9323 5.8946 0.1986 15 6 7.4259 4.4827 -0.1006 16 7 1.6524 2.0975 1.2518 17 6 0.4350 2.6645 1.3668 18 8 -0.3376 2.6366 0.4325 19 6 0.0361 3.3377 2.6547 20 16 -1.6429 3.9953 2.4968 21 6 -1.8451 4.7052 4.0968 22 1 -1.0449 4.6445 4.8195 23 6 -3.0328 5.3423 4.4282 24 7 -3.1837 5.8731 5.6233 25 14 -4.4166 5.4478 3.1778 26 1 -5.3019 4.2638 3.3181 27 1 -5.2035 6.6849 3.4135 28 1 -3.8445 5.4786 1.8078 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.9954 0.8312 0.6659 35 1 3.8499 1.0378 -1.0960 36 1 3.4410 3.5485 0.1309 37 1 5.4257 4.8257 -2.0352 38 1 4.2424 5.4950 -0.8883 39 1 5.5157 7.4694 -1.6681 40 1 7.5605 7.8976 -0.6891 41 1 8.9851 5.9672 -0.0740 42 1 7.8206 6.0939 1.2645 43 1 7.8605 3.7769 0.6070 44 1 7.7043 4.2055 -1.1173 45 1 2.2719 2.1232 1.9977 46 1 0.0671 2.6130 3.4683 47 1 0.7275 4.1531 2.8678 48 1 -4.0139 6.3181 5.8550 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001746109112.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:12 Heat of formation + Delta-G solvation = -105.462594 kcal Electronic energy + Delta-G solvation = -27166.115013 eV Core-core repulsion = 23345.499329 eV Total energy + Delta-G solvation = -3820.615683 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.43456 -40.78966 -38.69517 -37.51635 -35.01852 -34.65993 -33.62199 -32.37659 -31.71237 -30.74926 -29.19361 -27.83263 -25.37953 -24.27509 -23.26270 -22.58661 -21.59812 -21.13198 -19.87779 -18.87428 -18.45857 -17.97327 -17.39140 -17.17859 -17.05584 -16.66808 -16.29275 -16.14975 -15.76977 -15.17819 -15.03134 -14.84988 -14.71398 -14.59565 -14.34231 -14.29988 -14.11526 -13.77924 -13.55689 -13.32560 -13.21950 -13.15632 -13.03248 -12.90104 -12.67908 -12.46360 -12.13290 -11.97869 -11.85532 -11.77281 -11.72071 -11.32664 -11.16201 -10.89025 -10.75210 -10.50612 -10.15202 -10.06320 -9.88327 -8.96184 -8.50625 -6.20229 1.01274 1.32127 1.40834 1.47477 1.56857 1.59700 1.62870 2.09141 2.24653 2.30189 2.73785 2.88020 3.54708 3.56140 3.71041 3.84643 3.90358 4.00845 4.13190 4.21842 4.27510 4.28193 4.40468 4.40717 4.47474 4.50476 4.55807 4.62375 4.66714 4.71460 4.84151 4.89650 4.93885 5.03339 5.05643 5.07126 5.18501 5.25513 5.32075 5.38686 5.48278 5.53906 5.71611 5.76135 6.05655 6.12827 6.45062 6.48660 6.94949 7.17966 7.24485 8.61881 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.002708 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.509968 B =10337.721226 C =12271.467689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.143 3.857 4 H 0.085 0.915 5 C 0.120 3.880 6 N -0.721 5.721 7 C 0.521 3.479 8 O -0.577 6.577 9 C -0.105 4.105 10 H 0.112 0.888 11 C -0.079 4.079 12 C -0.165 4.165 13 C -0.159 4.159 14 C -0.092 4.092 15 C -0.097 4.097 16 N -0.710 5.710 17 C 0.541 3.459 18 O -0.544 6.544 19 C -0.114 4.114 20 S -0.169 6.169 21 C -0.528 4.528 22 H 0.061 0.939 23 C 0.044 3.956 24 N -0.919 5.919 25 Si 0.914 3.086 26 H -0.264 1.264 27 H -0.262 1.262 28 H -0.234 1.234 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.410 0.590 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.413 0.587 46 H 0.107 0.893 47 H 0.113 0.887 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.357 -4.978 -13.700 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.038 3.962 4 H 0.103 0.897 5 C -0.004 4.004 6 N -0.373 5.373 7 C 0.308 3.692 8 O -0.456 6.456 9 C -0.127 4.127 10 H 0.130 0.870 11 C -0.117 4.117 12 C -0.183 4.183 13 C -0.177 4.177 14 C -0.129 4.129 15 C -0.135 4.135 16 N -0.365 5.365 17 C 0.326 3.674 18 O -0.421 6.421 19 C -0.265 4.265 20 S 0.057 5.943 21 C -0.676 4.676 22 H 0.079 0.921 23 C -0.161 4.161 24 N -0.557 5.557 25 Si 0.736 3.264 26 H -0.189 1.189 27 H -0.186 1.186 28 H -0.157 1.157 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.247 0.753 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.250 0.750 46 H 0.125 0.875 47 H 0.131 0.869 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.525 -5.594 -15.252 26.176 hybrid contribution -0.093 0.691 1.660 1.800 sum 20.432 -4.903 -13.592 25.025 Atomic orbital electron populations 1.21740 0.96226 1.00688 1.01458 1.21867 0.95560 0.94924 1.04049 1.21271 0.93165 0.94598 0.87186 0.89722 1.21624 0.91332 0.83717 1.03761 1.46009 1.07465 1.10199 1.73640 1.20931 0.81925 0.91481 0.74827 1.90688 1.56813 1.47677 1.50456 1.21430 0.97768 0.91126 1.02328 0.87005 1.20400 1.00164 0.93474 0.97619 1.22088 0.96975 0.97728 1.01552 1.22259 0.96197 1.00169 0.99025 1.20503 0.99864 0.92160 1.00343 1.21362 0.92676 0.97236 1.02219 1.45826 1.15693 1.57674 1.17316 1.19740 0.81971 0.77650 0.88021 1.90721 1.51788 1.58915 1.40680 1.23295 0.99871 1.03880 0.99488 1.84663 1.17437 1.72480 1.19675 1.22488 1.04802 1.41550 0.98738 0.92122 1.25575 1.00218 0.93397 0.96914 1.70024 1.27875 1.36733 1.21087 0.85867 0.79999 0.79062 0.81434 1.18902 1.18603 1.15736 0.92550 0.94647 0.93680 0.88864 0.90398 0.90155 0.89489 0.75335 0.90873 0.89516 0.86801 0.86755 0.89701 0.89968 0.91481 0.92400 0.74988 0.87513 0.86858 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.52 71.98 0.61 -2.73 16 2 C -0.13 -2.00 5.61 30.60 0.17 -1.83 16 3 C 0.14 2.32 2.41 44.99 0.11 2.42 16 4 H 0.08 1.67 7.57 -2.38 -0.02 1.66 16 5 C 0.12 1.65 5.23 86.38 0.45 2.10 16 6 N -0.72 -10.36 5.30 -463.07 -2.45 -12.81 16 7 C 0.52 9.45 7.13 87.66 0.63 10.07 16 8 O -0.58 -14.71 15.90 -3.03 -0.05 -14.76 16 9 C -0.11 -1.52 2.57 -11.40 -0.03 -1.55 16 10 H 0.11 1.39 8.13 -2.39 -0.02 1.37 16 11 C -0.08 -1.04 5.28 29.66 0.16 -0.89 16 12 C -0.17 -2.18 9.81 27.03 0.27 -1.91 16 13 C -0.16 -1.99 9.81 27.03 0.27 -1.72 16 14 C -0.09 -1.09 6.11 29.63 0.18 -0.91 16 15 C -0.10 -1.48 4.70 30.71 0.14 -1.33 16 16 N -0.71 -13.25 4.47 -442.54 -1.98 -15.23 16 17 C 0.54 15.69 6.41 87.65 0.56 16.25 16 18 O -0.54 -19.75 13.02 -3.01 -0.04 -19.79 16 19 C -0.11 -3.90 6.16 71.23 0.44 -3.46 16 20 S -0.17 -8.06 18.55 -56.49 -1.05 -9.11 16 21 C -0.53 -29.84 10.04 67.95 0.68 -29.16 16 22 H 0.06 3.63 8.03 -2.91 -0.02 3.61 16 23 C 0.04 2.54 5.50 84.86 0.47 3.01 16 24 N -0.92 -55.27 13.97 21.65 0.30 -54.97 16 25 Si 0.91 44.03 27.74 68.60 1.90 45.93 16 26 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 28 H -0.23 -11.10 6.74 99.48 0.67 -10.43 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 30 H 0.03 1.02 5.65 -2.39 -0.01 1.00 16 31 H 0.04 1.18 7.85 -2.39 -0.02 1.16 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.41 5.20 7.84 -92.71 -0.73 4.48 16 37 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 38 H 0.09 1.00 7.92 -2.39 -0.02 0.98 16 39 H 0.11 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.11 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 1.13 7.90 -2.39 -0.02 1.11 16 44 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 45 H 0.41 5.79 8.60 -92.71 -0.80 4.99 16 46 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 47 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 48 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -73.25 398.61 1.14 -72.12 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -0.60 Total: 20.26 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 5.10 Total: -11.64 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -4.13 Total: -83.01 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.09 Total: -34.55 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.93 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.05 Total: -9.11 kcal Total: -73.25 1.14 -72.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746109112.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.347 kcal (2) G-P(sol) polarization free energy of solvation -73.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds