Wall clock time and date at job start Sat Apr 11 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47104 * 2 1 4 4 H 1.09003 * 109.47194 * 305.00054 * 3 2 1 5 5 C 1.53002 * 109.47251 * 185.00235 * 3 2 1 6 6 N 1.46500 * 109.47230 * 185.00188 * 5 3 2 7 7 C 1.34777 * 119.99851 * 180.02562 * 6 5 3 8 8 O 1.21285 * 120.00179 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99847 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.47129 * 179.97438 * 9 7 6 11 11 C 1.76197 * 100.00161 * 179.97438 * 10 9 7 12 12 H 1.08005 * 120.00077 * 0.02562 * 11 10 9 13 13 C 1.38802 * 120.00230 * 179.97438 * 11 10 9 14 14 N 1.31630 * 119.99825 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99622 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47124 * 90.00062 * 15 13 11 17 17 H 1.48507 * 109.46553 * 209.99948 * 15 13 11 18 18 H 1.48498 * 109.47304 * 329.99728 * 15 13 11 19 19 N 1.46497 * 109.47122 * 64.99897 * 3 2 1 20 20 C 1.34772 * 120.00194 * 274.99483 * 19 3 2 21 21 O 1.21280 * 119.99776 * 0.02562 * 20 19 3 22 22 C 1.50701 * 120.00173 * 179.97438 * 20 19 3 23 23 H 1.09002 * 115.52611 * 34.42436 * 22 20 19 24 24 C 1.52997 * 117.45900 * 179.97438 * 22 20 19 25 25 H 1.08995 * 119.30249 * 355.33302 * 24 22 20 26 26 C 1.54269 * 118.19570 * 201.19292 * 24 22 20 27 27 C 1.54892 * 104.19510 * 272.21098 * 26 24 22 28 28 C 1.54891 * 102.74987 * 37.94433 * 27 26 24 29 29 C 1.52999 * 117.44135 * 248.95702 * 22 20 19 30 30 H 1.08999 * 119.30506 * 3.69879 * 29 22 20 31 31 H 1.08998 * 109.47256 * 300.00069 * 1 2 3 32 32 H 1.09002 * 109.47210 * 60.00315 * 1 2 3 33 33 H 1.09004 * 109.47190 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46773 * 239.99849 * 2 1 3 35 35 H 1.08997 * 109.46875 * 120.00039 * 2 1 3 36 36 H 1.09002 * 109.47193 * 304.99988 * 5 3 2 37 37 H 1.09002 * 109.47301 * 64.99425 * 5 3 2 38 38 H 0.96996 * 120.00062 * 359.97438 * 6 5 3 39 39 H 1.08998 * 109.46833 * 299.99396 * 9 7 6 40 40 H 1.08994 * 109.47330 * 59.99657 * 9 7 6 41 41 H 0.97002 * 119.99289 * 179.97438 * 14 13 11 42 42 H 0.96998 * 119.99533 * 95.00558 * 19 3 2 43 43 H 1.09001 * 110.49025 * 30.89068 * 26 24 22 44 44 H 1.08998 * 110.48695 * 153.53399 * 26 24 22 45 45 H 1.09008 * 110.75290 * 156.25847 * 27 26 24 46 46 H 1.08999 * 110.75784 * 279.62187 * 27 26 24 47 47 H 1.08996 * 110.48523 * 80.73557 * 28 27 26 48 48 H 1.09002 * 110.48471 * 203.24801 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1634 2.1483 -0.2585 9 6 5.8981 4.4749 0.0358 10 16 7.7019 4.4771 -0.1129 11 6 8.0213 6.2011 0.0614 12 1 7.2025 6.8897 0.2096 13 6 9.3252 6.6741 0.0094 14 7 9.5637 7.9620 0.1401 15 14 10.7413 5.4830 -0.2461 16 1 11.0026 5.3292 -1.6999 17 1 11.9581 6.0101 0.4225 18 1 10.3891 4.1631 0.3359 19 7 1.6524 2.0974 1.2518 20 6 0.4351 2.6644 1.3669 21 8 -0.3395 2.6320 0.4343 22 6 0.0362 3.3377 2.6548 23 1 0.8404 3.8437 3.1890 24 6 -1.3587 3.9627 2.7215 25 1 -1.9825 3.9717 1.8278 26 6 -1.6182 5.0548 3.7798 27 6 -2.0519 4.2665 5.0406 28 6 -1.1386 3.0164 4.9931 29 6 -1.0547 2.6674 3.4924 30 1 -1.4605 1.7083 3.1707 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8932 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 3.9954 0.8311 0.6658 37 1 3.8498 1.0376 -1.0961 38 1 3.4410 3.5483 0.1309 39 1 5.4672 5.0878 -0.7559 40 1 5.6133 4.8818 1.0060 41 1 10.4750 8.2925 0.1041 42 1 2.2719 2.1231 1.9977 43 1 -0.7067 5.6189 3.9774 44 1 -2.4167 5.7208 3.4528 45 1 -1.8642 4.8481 5.9433 46 1 -3.1018 3.9808 4.9753 47 1 -0.1497 3.2513 5.3866 48 1 -1.5862 2.1956 5.5535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001746114272.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:29 Heat of formation + Delta-G solvation = -88.439471 kcal Electronic energy + Delta-G solvation = -26862.738549 eV Core-core repulsion = 23042.861043 eV Total energy + Delta-G solvation = -3819.877505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.64300 -40.70337 -39.65276 -37.50270 -35.02230 -34.66821 -33.59336 -32.44892 -31.51961 -29.17312 -29.06859 -27.84432 -25.48889 -24.29683 -22.24359 -21.72516 -21.51501 -21.09476 -20.63870 -19.91233 -18.58473 -17.92165 -17.67610 -17.22215 -17.00429 -16.57029 -16.44420 -16.02235 -15.81598 -15.59804 -14.96266 -14.81750 -14.72326 -14.62521 -14.29947 -14.06155 -13.99697 -13.72989 -13.51663 -13.34581 -13.09108 -12.98127 -12.71219 -12.57729 -12.39031 -12.28174 -12.17323 -11.99015 -11.85920 -11.82465 -11.70520 -11.17162 -11.09602 -11.05196 -10.95547 -10.59956 -10.54045 -10.20634 -10.09173 -8.99457 -8.51568 -6.22326 0.98537 1.32022 1.43228 1.46818 1.54035 1.55699 2.00466 2.21376 2.25996 2.70436 2.72992 2.86793 3.46740 3.54424 3.70500 3.77324 3.81772 3.99232 4.05869 4.10767 4.21234 4.21781 4.26876 4.36899 4.46516 4.48369 4.51811 4.52938 4.65173 4.69507 4.78558 4.82452 4.90811 4.98472 5.05291 5.12747 5.16093 5.21043 5.22006 5.28729 5.32119 5.41357 5.48400 5.50901 5.70623 6.11546 6.37640 6.49972 6.93574 7.13632 7.22270 8.60878 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012395 B = 0.002310 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.426721 B =12117.498741 C =13847.347638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.145 3.855 4 H 0.084 0.916 5 C 0.117 3.883 6 N -0.713 5.713 7 C 0.539 3.461 8 O -0.558 6.558 9 C -0.113 4.113 10 S -0.172 6.172 11 C -0.529 4.529 12 H 0.061 0.939 13 C 0.044 3.956 14 N -0.918 5.918 15 Si 0.915 3.085 16 H -0.263 1.263 17 H -0.260 1.260 18 H -0.235 1.235 19 N -0.712 5.712 20 C 0.546 3.454 21 O -0.566 6.566 22 C -0.168 4.168 23 H 0.137 0.863 24 C -0.140 4.140 25 H 0.102 0.898 26 C -0.098 4.098 27 C -0.121 4.121 28 C -0.094 4.094 29 C -0.128 4.128 30 H 0.106 0.894 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.412 0.588 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.277 0.723 42 H 0.413 0.587 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.567 -14.015 9.202 30.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.040 3.960 4 H 0.102 0.898 5 C -0.007 4.007 6 N -0.367 5.367 7 C 0.324 3.676 8 O -0.436 6.436 9 C -0.264 4.264 10 S 0.055 5.945 11 C -0.677 4.677 12 H 0.079 0.921 13 C -0.161 4.161 14 N -0.556 5.556 15 Si 0.737 3.263 16 H -0.188 1.188 17 H -0.184 1.184 18 H -0.158 1.158 19 N -0.365 5.365 20 C 0.334 3.666 21 O -0.445 6.445 22 C -0.189 4.189 23 H 0.155 0.845 24 C -0.159 4.159 25 H 0.120 0.880 26 C -0.135 4.135 27 C -0.158 4.158 28 C -0.131 4.131 29 C -0.146 4.146 30 H 0.125 0.875 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.249 0.751 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.086 0.914 42 H 0.250 0.750 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.723 -15.416 8.259 30.284 hybrid contribution -0.098 1.631 0.085 1.636 sum -24.822 -13.785 8.345 29.594 Atomic orbital electron populations 1.21706 0.95418 1.00841 1.01550 1.21866 0.96265 0.94506 1.03998 1.21191 0.92219 0.94983 0.87620 0.89823 1.21720 0.92225 0.83008 1.03755 1.45710 1.06061 1.10577 1.74317 1.19872 0.82749 0.89495 0.75487 1.90704 1.56809 1.46750 1.49323 1.23277 0.98291 0.97566 1.07304 1.84675 1.03836 1.09993 1.96014 1.22467 0.96725 0.91538 1.56947 0.92052 1.25589 1.00832 0.96602 0.93093 1.70022 1.22460 1.14193 1.48896 0.85855 0.79439 0.80986 0.80016 1.18803 1.18392 1.15836 1.45938 1.16572 1.57137 1.16814 1.19830 0.81283 0.77174 0.88351 1.90712 1.52221 1.60070 1.41490 1.22430 0.95160 1.04961 0.96358 0.84546 1.23222 0.95913 0.96067 1.00658 0.88022 1.22045 1.01917 0.96155 0.93387 1.22705 0.99802 0.95694 0.97647 1.22047 1.00825 0.98389 0.91878 1.23266 0.99739 0.97155 0.94486 0.87544 0.93773 0.93827 0.92420 0.89520 0.90258 0.90087 0.89992 0.75133 0.87283 0.86680 0.91377 0.75002 0.90836 0.90645 0.89964 0.91032 0.90377 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.51 71.98 0.61 -1.65 16 2 C -0.13 -1.67 5.61 30.59 0.17 -1.50 16 3 C 0.14 2.12 2.41 44.99 0.11 2.23 16 4 H 0.08 1.52 7.58 -2.39 -0.02 1.51 16 5 C 0.12 2.01 5.23 86.38 0.45 2.46 16 6 N -0.71 -15.07 5.39 -463.05 -2.49 -17.56 16 7 C 0.54 17.17 7.85 87.66 0.69 17.85 16 8 O -0.56 -22.28 15.86 -3.04 -0.05 -22.33 16 9 C -0.11 -4.10 6.16 71.24 0.44 -3.66 16 10 S -0.17 -8.47 18.55 -56.49 -1.05 -9.52 16 11 C -0.53 -30.43 10.04 67.96 0.68 -29.75 16 12 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 13 C 0.04 2.57 5.50 84.86 0.47 3.04 16 14 N -0.92 -55.59 13.97 21.65 0.30 -55.29 16 15 Si 0.92 44.49 27.74 68.60 1.90 46.39 16 16 H -0.26 -12.53 7.11 99.48 0.71 -11.83 16 17 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.23 -11.29 6.74 99.48 0.67 -10.62 16 19 N -0.71 -9.47 4.47 -442.55 -1.98 -11.45 16 20 C 0.55 9.49 6.18 87.66 0.54 10.03 16 21 O -0.57 -13.85 13.46 -3.03 -0.04 -13.89 16 22 C -0.17 -2.31 5.74 -11.54 -0.07 -2.37 16 23 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 24 C -0.14 -2.07 6.39 -10.10 -0.06 -2.13 16 25 H 0.10 1.92 7.79 -2.39 -0.02 1.90 16 26 C -0.10 -1.09 6.63 31.67 0.21 -0.88 16 27 C -0.12 -1.04 6.91 31.89 0.22 -0.82 16 28 C -0.09 -0.82 6.63 31.69 0.21 -0.61 16 29 C -0.13 -1.58 6.64 -10.09 -0.07 -1.65 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 0.83 5.64 -2.39 -0.01 0.81 16 32 H 0.04 0.86 7.85 -2.39 -0.02 0.84 16 33 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.41 7.10 8.14 -92.71 -0.75 6.34 16 39 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 40 H 0.12 3.76 8.14 -2.40 -0.02 3.74 16 41 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.41 4.10 8.60 -92.71 -0.80 3.31 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 46 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -74.46 400.87 0.58 -73.89 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -0.62 Total: 19.17 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.60 Total: -9.41 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -4.17 Total: -84.31 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.09 Total: -36.22 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.90 Total: 46.39 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.05 Total: -9.52 kcal Total: -74.46 0.58 -73.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746114272.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.553 kcal (2) G-P(sol) polarization free energy of solvation -74.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds