Wall clock time and date at job start Sat Apr 11 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51586 * 135.77749 * 2 1 4 4 C 1.53847 * 86.75015 * 154.87097 * 3 2 1 5 5 C 1.52998 * 113.66147 * 270.21860 * 4 3 2 6 6 C 1.50703 * 113.65309 * 139.27100 * 4 3 2 7 7 O 1.21288 * 120.00048 * 359.97438 * 6 4 3 8 8 N 1.34778 * 120.00070 * 179.97438 * 6 4 3 9 9 C 1.46496 * 120.00031 * 179.97438 * 8 6 4 10 10 H 1.09004 * 109.47055 * 35.00639 * 9 8 6 11 11 C 1.52999 * 109.47330 * 274.99914 * 9 8 6 12 12 C 1.53005 * 109.46795 * 65.00271 * 11 9 8 13 13 C 1.53006 * 109.47070 * 154.99902 * 9 8 6 14 14 N 1.46504 * 109.46883 * 305.00371 * 13 9 8 15 15 C 1.34775 * 119.99531 * 179.97438 * 14 13 9 16 16 O 1.21279 * 120.00300 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99773 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47016 * 180.02562 * 17 15 14 19 19 C 1.76204 * 100.00065 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99828 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99910 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00067 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99868 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46942 * 90.00308 * 23 21 19 25 25 H 1.48495 * 109.47152 * 210.00400 * 23 21 19 26 26 H 1.48503 * 109.46930 * 330.00273 * 23 21 19 27 27 C 1.51576 * 135.78624 * 180.02562 * 2 1 3 28 28 H 1.07996 * 120.00544 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99787 * 180.02562 * 1 2 3 30 30 H 1.08994 * 113.66523 * 40.41410 * 3 2 1 31 31 H 1.08997 * 113.66751 * 269.33695 * 3 2 1 32 32 H 1.08997 * 109.47173 * 298.34535 * 5 4 3 33 33 H 1.09003 * 109.46663 * 58.33426 * 5 4 3 34 34 H 1.08997 * 109.46881 * 178.33793 * 5 4 3 35 35 H 0.97002 * 119.99581 * 359.97438 * 8 6 4 36 36 H 1.08999 * 109.46840 * 185.00213 * 11 9 8 37 37 H 1.09001 * 109.47277 * 305.00134 * 11 9 8 38 38 H 1.09001 * 109.47320 * 59.99889 * 12 11 9 39 39 H 1.08998 * 109.46664 * 180.02562 * 12 11 9 40 40 H 1.08995 * 109.46897 * 299.99628 * 12 11 9 41 41 H 1.09001 * 109.47002 * 64.99868 * 13 9 8 42 42 H 1.08993 * 109.46955 * 185.00306 * 13 9 8 43 43 H 0.96992 * 119.99966 * 359.97438 * 14 13 9 44 44 H 1.08998 * 109.47224 * 299.99707 * 17 15 14 45 45 H 1.08993 * 109.47046 * 60.00641 * 17 15 14 46 46 H 0.97001 * 119.99673 * 179.97438 * 22 21 19 47 47 H 1.08993 * 113.66945 * 90.65961 * 27 2 1 48 48 H 1.09002 * 113.66056 * 319.58950 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3963 1.0572 0.0000 4 6 3.3037 -0.0002 0.6523 5 6 3.2468 0.0007 2.1812 6 6 4.7130 0.0001 0.1183 7 8 5.0338 0.7881 -0.7460 8 7 5.6168 -0.8753 0.6013 9 6 6.9866 -0.8754 0.0819 10 1 7.2857 0.1459 -0.1542 11 6 7.0518 -1.7317 -1.1844 12 6 6.2031 -1.0855 -2.2812 13 6 7.9321 -1.4527 1.1372 14 7 7.7818 -0.7056 2.3885 15 6 8.5198 -1.0399 3.4656 16 8 9.3085 -1.9587 3.3989 17 6 8.3656 -0.2711 4.7526 18 16 9.4841 -0.9541 6.0010 19 6 9.1052 0.1003 7.3609 20 1 8.3671 0.8808 7.2498 21 6 9.7555 -0.0722 8.5750 22 7 10.6555 -1.0231 8.7103 23 14 9.3543 1.0461 10.0165 24 1 8.2465 0.4543 10.8088 25 1 10.5550 1.1936 10.8777 26 1 8.9425 2.3796 9.5089 27 6 2.3964 -1.0570 -0.0005 28 1 -0.5401 0.9352 0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 2.1797 1.9071 0.6472 31 1 2.7179 1.3541 -0.9982 32 1 3.5896 0.9648 2.5570 33 1 2.2209 -0.1720 2.5066 34 1 3.8891 -0.7898 2.5691 35 1 5.3602 -1.5053 1.2929 36 1 8.0860 -1.8046 -1.5207 37 1 6.6687 -2.7291 -0.9687 38 1 6.5862 -0.0881 -2.4969 39 1 6.2492 -1.6957 -3.1832 40 1 5.1689 -1.0126 -1.9448 41 1 7.6886 -2.5012 1.3086 42 1 8.9609 -1.3711 0.7867 43 1 7.1513 0.0294 2.4417 44 1 8.6099 0.7772 4.5811 45 1 7.3367 -0.3519 5.1030 46 1 11.1102 -1.1434 9.5586 47 1 2.7180 -1.3534 -0.9988 48 1 2.1798 -1.9072 0.6464 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001746114974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:32 Heat of formation + Delta-G solvation = -67.241491 kcal Electronic energy + Delta-G solvation = -27261.604573 eV Core-core repulsion = 23442.646281 eV Total energy + Delta-G solvation = -3818.958292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.84845 -40.65127 -39.30530 -37.39523 -34.99176 -34.57461 -33.69715 -32.07419 -31.41656 -29.06344 -28.55828 -27.63886 -26.88511 -24.90599 -24.14670 -21.99637 -21.52708 -20.77118 -19.83070 -18.69335 -18.06886 -17.78787 -17.62228 -17.02306 -16.86950 -16.54524 -16.47900 -15.81877 -15.74084 -15.43106 -15.29049 -14.81370 -14.59689 -14.46659 -14.41541 -14.17438 -14.04384 -13.50855 -13.36398 -13.15976 -13.15103 -13.04125 -12.88571 -12.83883 -12.63466 -12.47354 -12.35524 -12.19458 -11.83120 -11.76085 -11.71820 -11.14787 -11.13702 -10.98451 -10.66827 -10.26885 -10.17157 -10.05919 -10.00132 -8.65421 -8.34206 -6.11721 1.27217 1.30665 1.42714 1.47232 1.57314 1.60139 1.62142 2.11756 2.26947 2.31448 3.00092 3.32306 3.34611 3.48364 3.53981 3.58289 3.89973 3.93091 3.98362 4.03827 4.11789 4.29370 4.38921 4.44833 4.51785 4.53933 4.65809 4.67843 4.77711 4.79550 4.81207 4.88530 4.93440 4.95821 5.01684 5.07764 5.15451 5.21287 5.28811 5.36280 5.42689 5.44166 5.51787 5.56110 5.99762 6.20423 6.43499 6.52552 7.07486 7.20871 7.24634 8.74832 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.002420 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.903876 B =11568.470743 C =13317.193391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.163 4.163 3 C -0.086 4.086 4 C -0.101 4.101 5 C -0.128 4.128 6 C 0.533 3.467 7 O -0.563 6.563 8 N -0.714 5.714 9 C 0.145 3.855 10 H 0.084 0.916 11 C -0.128 4.128 12 C -0.137 4.137 13 C 0.116 3.884 14 N -0.713 5.713 15 C 0.537 3.463 16 O -0.561 6.561 17 C -0.131 4.131 18 S -0.148 6.148 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.259 1.259 27 C -0.081 4.081 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.411 0.589 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.412 0.588 44 H 0.105 0.895 45 H 0.112 0.888 46 H 0.271 0.729 47 H 0.090 0.910 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.472 1.183 -20.655 29.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C -0.124 4.124 4 C -0.104 4.104 5 C -0.185 4.185 6 C 0.321 3.679 7 O -0.442 6.442 8 N -0.366 5.366 9 C 0.040 3.960 10 H 0.103 0.897 11 C -0.167 4.167 12 C -0.195 4.195 13 C -0.008 4.008 14 N -0.367 5.367 15 C 0.323 3.677 16 O -0.439 6.439 17 C -0.282 4.282 18 S 0.079 5.921 19 C -0.693 4.693 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.183 1.183 27 C -0.119 4.119 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.248 0.752 44 H 0.123 0.877 45 H 0.130 0.870 46 H 0.080 0.920 47 H 0.108 0.892 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.786 0.131 -21.299 28.401 hybrid contribution -1.010 1.614 1.256 2.281 sum -19.797 1.745 -20.043 28.226 Atomic orbital electron populations 1.23119 0.93178 1.03192 1.00494 1.22769 0.94130 0.97621 1.01760 1.22210 0.92841 0.96038 1.01281 1.21972 0.89924 1.00521 0.97977 1.21618 1.03859 1.03135 0.89903 1.20526 0.87009 0.79365 0.81038 1.90706 1.80408 1.40599 1.32457 1.46047 1.10304 1.37958 1.42340 1.21177 0.80930 1.01051 0.92843 0.89743 1.21866 1.01901 0.99237 0.93657 1.21708 0.99745 0.99995 0.98036 1.21703 1.00095 0.96483 0.82512 1.45708 1.43156 1.37160 1.10655 1.19985 0.79744 0.83163 0.84831 1.90705 1.37501 1.31345 1.84372 1.23375 1.05422 1.03484 0.95944 1.85554 1.53164 1.47135 1.06235 1.23195 1.28049 1.19971 0.98124 0.89988 1.26105 0.94132 0.97348 1.01542 1.70178 1.25411 1.32479 1.26646 0.84976 0.77989 0.78341 0.76822 1.19216 1.20416 1.18311 1.22234 0.92461 0.96002 1.01156 0.86937 0.86368 0.90310 0.89345 0.91774 0.90505 0.90708 0.75192 0.89729 0.90304 0.93763 0.92482 0.93586 0.90362 0.90326 0.75166 0.87689 0.87006 0.92014 0.89177 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 14.71 67.78 1.00 -0.70 16 2 C -0.16 -2.06 6.60 -15.98 -0.11 -2.17 16 3 C -0.09 -1.30 6.98 30.42 0.21 -1.09 16 4 C -0.10 -1.34 1.27 -52.42 -0.07 -1.40 16 5 C -0.13 -1.41 8.98 71.98 0.65 -0.77 16 6 C 0.53 8.95 5.50 87.66 0.48 9.44 16 7 O -0.56 -13.34 13.04 -3.05 -0.04 -13.38 16 8 N -0.71 -9.54 4.36 -442.52 -1.93 -11.47 16 9 C 0.15 2.20 2.41 44.99 0.11 2.31 16 10 H 0.08 1.56 7.58 -2.39 -0.02 1.55 16 11 C -0.13 -1.73 5.61 30.60 0.17 -1.56 16 12 C -0.14 -2.26 8.52 71.98 0.61 -1.65 16 13 C 0.12 2.16 5.23 86.38 0.45 2.62 16 14 N -0.71 -16.04 5.39 -463.05 -2.49 -18.53 16 15 C 0.54 18.41 7.85 87.66 0.69 19.10 16 16 O -0.56 -24.47 15.86 -3.03 -0.05 -24.52 16 17 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 18 S -0.15 -8.02 20.57 -56.49 -1.16 -9.18 16 19 C -0.55 -30.62 9.50 67.95 0.65 -29.98 16 20 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 21 C 0.01 0.76 5.49 84.86 0.47 1.23 16 22 N -0.91 -55.32 13.22 21.65 0.29 -55.04 16 23 Si 1.00 43.05 29.55 68.60 2.03 45.08 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 27 C -0.08 -0.92 7.18 30.40 0.22 -0.71 16 28 H 0.11 1.01 8.06 -2.91 -0.02 0.99 16 29 H 0.12 0.93 8.06 -2.91 -0.02 0.91 16 30 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 31 H 0.09 1.63 7.42 -2.39 -0.02 1.61 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.78 7.70 -2.39 -0.02 0.76 16 34 H 0.07 0.68 7.04 -2.39 -0.02 0.66 16 35 H 0.41 4.28 7.50 -92.71 -0.70 3.59 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.04 0.87 7.85 -2.39 -0.02 0.85 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.05 0.84 5.65 -2.39 -0.01 0.83 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.41 7.38 8.14 -92.71 -0.75 6.62 16 44 H 0.10 3.66 8.14 -2.40 -0.02 3.64 16 45 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 46 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 47 H 0.09 1.11 8.09 -2.39 -0.02 1.09 16 48 H 0.10 0.82 8.10 -2.39 -0.02 0.81 16 Total: -1.00 -76.24 405.83 2.12 -74.12 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -0.49 Total: 22.77 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 5.97 Total: -9.85 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -4.14 Total: -85.03 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -0.09 Total: -37.90 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.18 kcal Total: -76.24 2.12 -74.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746114974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.879 kcal (2) G-P(sol) polarization free energy of solvation -76.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds