Wall clock time and date at job start Sat Apr 11 2020 06:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51585 * 135.78061 * 2 1 4 4 C 1.53836 * 86.75475 * 154.85170 * 3 2 1 5 5 C 1.53002 * 113.65321 * 270.21989 * 4 3 2 6 6 C 1.50701 * 113.65876 * 139.27266 * 4 3 2 7 7 O 1.21275 * 119.99632 * 359.97438 * 6 4 3 8 8 N 1.34769 * 119.99690 * 179.97438 * 6 4 3 9 9 C 1.46505 * 119.99686 * 179.97438 * 8 6 4 10 10 H 1.09002 * 109.47068 * 324.99893 * 9 8 6 11 11 C 1.53002 * 109.47411 * 84.99974 * 9 8 6 12 12 C 1.53003 * 109.46754 * 294.99930 * 11 9 8 13 13 C 1.52997 * 109.47212 * 204.99833 * 9 8 6 14 14 N 1.46500 * 109.47170 * 54.99826 * 13 9 8 15 15 C 1.34777 * 120.00168 * 180.02562 * 14 13 9 16 16 O 1.21278 * 119.99916 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99931 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47028 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00098 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99909 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00376 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99430 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00194 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47393 * 89.99772 * 23 21 19 25 25 H 1.48502 * 109.47024 * 210.00078 * 23 21 19 26 26 H 1.48505 * 109.47262 * 329.99610 * 23 21 19 27 27 C 1.51581 * 135.78211 * 180.02562 * 2 1 3 28 28 H 1.08003 * 120.00105 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.99610 * 180.02562 * 1 2 3 30 30 H 1.09001 * 113.66338 * 40.37843 * 3 2 1 31 31 H 1.08996 * 113.74836 * 269.32745 * 3 2 1 32 32 H 1.09002 * 109.47548 * 298.33090 * 5 4 3 33 33 H 1.08995 * 109.47462 * 58.34037 * 5 4 3 34 34 H 1.09005 * 109.47183 * 178.33661 * 5 4 3 35 35 H 0.97000 * 120.00680 * 359.97438 * 8 6 4 36 36 H 1.09000 * 109.47059 * 54.99891 * 11 9 8 37 37 H 1.08996 * 109.47073 * 174.99983 * 11 9 8 38 38 H 1.09000 * 109.47306 * 299.99810 * 12 11 9 39 39 H 1.09000 * 109.46927 * 59.99869 * 12 11 9 40 40 H 1.09001 * 109.47198 * 179.97438 * 12 11 9 41 41 H 1.08998 * 109.47192 * 174.99746 * 13 9 8 42 42 H 1.09000 * 109.47325 * 294.99862 * 13 9 8 43 43 H 0.97004 * 120.00188 * 0.02562 * 14 13 9 44 44 H 1.09002 * 109.47475 * 299.99556 * 17 15 14 45 45 H 1.09001 * 109.47706 * 59.99630 * 17 15 14 46 46 H 0.97003 * 119.99249 * 179.97438 * 22 21 19 47 47 H 1.08995 * 113.66638 * 90.68653 * 27 2 1 48 48 H 1.08995 * 113.66661 * 319.61433 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0572 0.0000 4 6 3.3036 0.0000 0.6527 5 6 3.2462 0.0015 2.1816 6 6 4.7130 0.0001 0.1192 7 8 5.0341 0.7878 -0.7452 8 7 5.6165 -0.8752 0.6027 9 6 6.9866 -0.8755 0.0837 10 1 6.9724 -0.6344 -0.9793 11 6 7.8160 0.1695 0.8327 12 6 7.2692 1.5663 0.5311 13 6 7.6077 -2.2592 0.2845 14 7 6.7494 -3.2740 -0.3317 15 6 7.0987 -4.5746 -0.2786 16 8 8.1239 -4.9048 0.2789 17 6 6.2160 -5.6183 -0.9129 18 16 6.9508 -7.2553 -0.6752 19 6 5.7476 -8.2520 -1.4896 20 1 4.8808 -7.7918 -1.9406 21 6 5.9136 -9.6287 -1.5517 22 7 6.9702 -10.1896 -1.0025 23 14 4.6383 -10.6853 -2.4158 24 1 5.0011 -10.8265 -3.8488 25 1 4.5954 -12.0273 -1.7815 26 1 3.3045 -10.0421 -2.3039 27 6 2.3964 -1.0571 -0.0005 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 2.1795 1.9073 0.6468 31 1 2.7192 1.3549 -0.9976 32 1 3.5891 0.9656 2.5573 33 1 2.2204 -0.1712 2.5069 34 1 3.8884 -0.7890 2.5701 35 1 5.3598 -1.5050 1.2943 36 1 7.7573 -0.0202 1.9044 37 1 8.8551 0.1084 0.5093 38 1 7.3280 1.7559 -0.5407 39 1 6.2301 1.6273 0.8545 40 1 7.8598 2.3107 1.0650 41 1 8.5932 -2.2860 -0.1804 42 1 7.7034 -2.4632 1.3510 43 1 5.9296 -3.0098 -0.7779 44 1 5.2301 -5.5914 -0.4487 45 1 6.1210 -5.4145 -1.9795 46 1 7.0860 -11.1517 -1.0456 47 1 2.7183 -1.3532 -0.9988 48 1 2.1797 -1.9075 0.6460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001746114975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:37 Heat of formation + Delta-G solvation = -44.401642 kcal Electronic energy + Delta-G solvation = -27304.256656 eV Core-core repulsion = 23486.288774 eV Total energy + Delta-G solvation = -3817.967882 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.15378 -39.43112 -38.50887 -36.50382 -33.85673 -32.99008 -32.45202 -31.51538 -30.08579 -28.21651 -27.80987 -26.29890 -25.51503 -24.14435 -23.35248 -21.17054 -20.34841 -20.03726 -18.12717 -17.93540 -17.22039 -16.94962 -16.33242 -15.95106 -15.72524 -15.23590 -15.04419 -14.90875 -14.82555 -14.60143 -14.00641 -13.91462 -13.73841 -13.41504 -13.39520 -13.02861 -12.88219 -12.63472 -12.56556 -12.37734 -12.25141 -11.91367 -11.81061 -11.68364 -11.37789 -11.29586 -11.08548 -11.08226 -11.04765 -10.78165 -10.59325 -9.93824 -9.84546 -9.51446 -9.45117 -9.31064 -9.09747 -8.98472 -8.26995 -6.53024 -6.24182 -3.94942 1.85544 2.31637 2.80696 2.99595 3.04729 3.20734 3.26280 3.29991 3.66104 3.91805 4.05356 4.13944 4.18066 4.33270 4.48698 4.57674 4.72510 4.81843 4.95275 5.09109 5.11092 5.13001 5.20565 5.26079 5.31913 5.33761 5.36766 5.47502 5.49654 5.51632 5.56087 5.60866 5.73149 5.74591 5.75194 5.80190 5.84383 5.87211 6.07429 6.09665 6.14489 6.21478 6.50820 6.54472 7.18318 7.57060 7.61460 7.93153 8.32733 8.53776 9.21294 10.83248 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010922 B = 0.002623 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.008521 B =10671.693800 C =12787.364025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.149 4.149 3 C -0.080 4.080 4 C -0.106 4.106 5 C -0.127 4.127 6 C 0.532 3.468 7 O -0.531 6.531 8 N -0.723 5.723 9 C 0.133 3.867 10 H 0.096 0.904 11 C -0.131 4.131 12 C -0.143 4.143 13 C 0.113 3.887 14 N -0.739 5.739 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.089 4.089 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.403 0.597 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.097 0.903 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.652 25.067 5.236 27.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.117 4.117 4 C -0.109 4.109 5 C -0.184 4.184 6 C 0.319 3.681 7 O -0.407 6.407 8 N -0.375 5.375 9 C 0.029 3.971 10 H 0.114 0.886 11 C -0.170 4.170 12 C -0.200 4.200 13 C -0.012 4.012 14 N -0.394 5.394 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.127 4.127 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.238 0.762 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.232 0.768 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.561 24.908 5.588 26.357 hybrid contribution -2.468 -0.534 -1.039 2.730 sum -9.029 24.374 4.549 26.388 Atomic orbital electron populations 1.22905 0.93413 1.02287 1.02018 1.22748 0.93851 0.97916 1.00416 1.22234 0.92019 0.95394 1.02087 1.21979 0.91191 1.00499 0.97266 1.21583 1.03173 1.02618 0.91056 1.20233 0.86214 0.79937 0.81745 1.90708 1.79905 1.38757 1.31319 1.46125 1.10714 1.38110 1.42565 1.21352 0.81297 0.94328 1.00169 0.88607 1.21882 0.99546 0.95054 1.00546 1.21783 1.00928 0.95226 1.02091 1.21591 0.94822 0.85394 0.99356 1.45987 1.26941 1.06307 1.60207 1.20321 0.86277 0.82310 0.79272 1.90711 1.25140 1.80641 1.42477 1.23529 1.02315 1.01400 1.03175 1.85397 1.32271 0.91077 1.74529 1.22864 1.09781 0.94044 1.41726 0.90940 1.24994 0.96209 0.96989 0.95379 1.70019 1.26850 1.11479 1.41926 0.86167 0.80764 0.79165 0.79405 1.20253 1.20738 1.19687 1.22312 0.92963 0.95884 1.01504 0.87595 0.87498 0.90492 0.87604 0.91648 0.91091 0.91756 0.76200 0.91468 0.90609 0.92129 0.92542 0.93504 0.89997 0.90940 0.76768 0.89273 0.89253 0.92162 0.88460 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 14.71 29.01 0.43 -0.72 16 2 C -0.15 -1.13 6.60 -100.29 -0.66 -1.79 16 3 C -0.08 -0.63 6.98 -27.01 -0.19 -0.81 16 4 C -0.11 -0.77 1.27 -154.86 -0.20 -0.97 16 5 C -0.13 -0.74 8.98 37.16 0.33 -0.40 16 6 C 0.53 4.76 5.50 -10.99 -0.06 4.70 16 7 O -0.53 -6.35 13.03 5.56 0.07 -6.28 16 8 N -0.72 -5.48 4.36 -53.80 -0.23 -5.72 16 9 C 0.13 1.12 2.42 -67.93 -0.16 0.96 16 10 H 0.10 0.94 7.58 -51.93 -0.39 0.55 16 11 C -0.13 -1.01 5.61 -26.73 -0.15 -1.16 16 12 C -0.14 -1.26 8.51 37.16 0.32 -0.94 16 13 C 0.11 1.16 5.23 -4.04 -0.02 1.14 16 14 N -0.74 -9.04 5.39 -60.30 -0.32 -9.37 16 15 C 0.53 9.42 7.85 -10.99 -0.09 9.33 16 16 O -0.52 -11.23 15.86 5.56 0.09 -11.14 16 17 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 20 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.95 13.22 55.49 0.73 -25.21 16 23 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 27 C -0.09 -0.66 7.18 -27.00 -0.19 -0.85 16 28 H 0.11 0.61 8.06 -52.48 -0.42 0.18 16 29 H 0.11 0.65 8.06 -52.49 -0.42 0.23 16 30 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 31 H 0.11 0.97 7.42 -51.93 -0.39 0.58 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.40 7.70 -51.93 -0.40 0.00 16 34 H 0.06 0.32 7.04 -51.93 -0.37 -0.04 16 35 H 0.40 2.61 7.50 -40.82 -0.31 2.31 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.61 7.85 -51.93 -0.41 0.20 16 39 H 0.06 0.55 5.64 -51.93 -0.29 0.26 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.40 4.07 8.14 -40.82 -0.33 3.74 16 44 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 45 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 46 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 48 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -34.42 405.83 -8.93 -43.35 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.92 Total: 2.97 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -0.23 Total: -7.11 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.17 Total: -40.30 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.16 Total: -17.42 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.42 -8.93 -43.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746114975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.052 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds